mRNA_H-elongata_contig140067.2790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140067.2790.1
Unique NamemRNA_H-elongata_contig140067.2790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.180e-25
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF--FNETG 408
            PIFT A F SN A+ GGAV   GS    ++ D+S     +F+ C FI NRA ATGGAI+SA G  A  ++TF+GN A  GG LRL+G   ++   F +NIS+  GG A+S IGS L +E  TF  N +DCD G +  +N +G
Sbjct:  613 PIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASG 754          
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.930e-24
Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF 393
            P F N TF SN A+ GGAV + GS  S    D+      +FE C F+GNRA ATGGAI+SA G      TTF  N A  GGALRL+G   +N   F EN S+ +GG A+S IG+    E  +F  N +DC  GTF
Sbjct:  967 PAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTF 1101          
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.270e-18
Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 PIFTNATFRSNLAETGGAVFITGSST---SLDDDDMSASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTFFNETGVSLS 420
            P F++  F SN A+ GGAV   GS       +D  +  +F  C F  NRA ATGGA++SA+G      T FRGN+A  GGALRL+G   +    F ENIS+   G A+S +G    I   +F  N ++C   TF N T  S +
Sbjct: 2290 PTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNYTFTSAA 2432          
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.460e-18
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 PIFTNATFRSNLAETGGAVFITGSST---SLDDDDMSASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTFFNET 405
            P F++  F SN A+ GGAV   GS       +D  +  +F  C F  NRA ATGGA++SA+G      T FRGN+A  GGALRL+G   +    F EN+S+   G A+S +G    I   TF  N ++C   TF N T
Sbjct:  377 PTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT 514          
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.630e-17
Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    7 FTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF--FNET 405
            F   +F SN A+ GGAV   GS  S   +D+      +F+ C F+GNRA ATGGAI++A G      TTF  N A  GGALRL+G   +    F EN S   GG A+S IG     E   F  N +DC  G F  +NE+
Sbjct:  778 FPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNES 916          
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.850e-8
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS---ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSG 249
            P F N +  SN A+ GGA+ + GS TS + +D +    +F+ C F+ NRA ATGG +++ATG   + ++ F  N A   GALRL+G
Sbjct:  118 PTFVNVSLISNWAQVGGAISLIGSGTSFNPEDYTPAPTTFDQCRFLSNRAIATGGTVDTATGQDRVVNSVFEDNTAGTDGALRLAG 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G301_ECTSI1.180e-2547.18Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI4.930e-2447.41Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FHG7_ECTSI2.270e-1840.56LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHH1_ECTSI5.460e-1841.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIY0_ECTSI6.630e-1742.45Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K3R8_9PHAE1.850e-841.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140067contigH-elongata_contig140067:129..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7G301
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.9692485-CDS-H-elongata_contig140067:128..5511622929832.9692485-CDS-H-elongata_contig140067:128..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140067 129..551 +
1691679176.0446327-CDS-H-elongata_contig140067:128..5511691679176.0446327-CDS-H-elongata_contig140067:128..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140067 129..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140067.2790.1prot_H-elongata_contig140067.2790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140067 129..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140067.2790.1

>prot_H-elongata_contig140067.2790.1 ID=prot_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMSASFEGCVFIGNRAEAT
GGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELD
GGQAISFIGSELRIETGTFRKNAYDCDDGTFFNETGVSLS*
back to top

mRNA from alignment at H-elongata_contig140067:129..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140067.2790.1 ID=mRNA_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig140067:129..551+ (Himanthalia elongata Himel1 dioecious)
CCTATTTTCACCAACGCTACCTTTCGGTCCAACTTGGCCGAAACGGGTGG CGCTGTATTCATCACTGGGAGTAGTACATCGCTTGACGACGACGATATGT CAGCCAGTTTTGAGGGATGTGTGTTTATCGGTAACAGGGCAGAGGCGACC GGCGGGGCAATCGAGAGTGCAACTGGCACTGCGGCCATCACGAGCACAAC CTTTAGAGGCAACGAGGCCCGAAATGGGGGTGCTCTGAGACTTTCTGGCG CGACAATGATGAATGAGAGTATATTTGAAGAAAATATTTCGGAGCTCGAC GGCGGGCAGGCGATATCGTTCATTGGATCCGAGTTGAGAATAGAGACTGG CACATTCCGTAAAAACGCCTACGATTGCGATGACGGGACGTTTTTCAACG AAACCGGGGTAAGCTTGAGCTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig140067:129..551+

>mRNA_H-elongata_contig140067.2790.1 ID=mRNA_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig140067:129..551+ (Himanthalia elongata Himel1 dioecious)
CCTATTTTCACCAACGCTACCTTTCGGTCCAACTTGGCCGAAACGGGTGG
CGCTGTATTCATCACTGGGAGTAGTACATCGCTTGACGACGACGATATGT
CAGCCAGTTTTGAGGGATGTGTGTTTATCGGTAACAGGGCAGAGGCGACC
GGCGGGGCAATCGAGAGTGCAACTGGCACTGCGGCCATCACGAGCACAAC
CTTTAGAGGCAACGAGGCCCGAAATGGGGGTGCTCTGAGACTTTCTGGCG
CGACAATGATGAATGAGAGTATATTTGAAGAAAATATTTCGGAGCTCGAC
GGCGGGCAGGCGATATCGTTCATTGGATCCGAGTTGAGAATAGAGACTGG
CACATTCCGTAAAAACGCCTACGATTGCGATGACGGGACGTTTTTCAACG
AAACCGGGGTAAGCTTGAGCTAACCTATTTTCACCAACGCTACCTTTCGG
TCCAACTTGGCCGAAACGGGTGGCGCTGTATTCATCACTGGGAGTAGTAC
ATCGCTTGACGACGACGATATGTCAGCCAGTTTTGAGGGATGTGTGTTTA
TCGGTAACAGGGCAGAGGCGACCGGCGGGGCAATCGAGAGTGCAACTGGC
ACTGCGGCCATCACGAGCACAACCTTTAGAGGCAACGAGGCCCGAAATGG
GGGTGCTCTGAGACTTTCTGGCGCGACAATGATGAATGAGAGTATATTTG
AAGAAAATATTTCGGAGCTCGACGGCGGGCAGGCGATATCGTTCATTGGA
TCCGAGTTGAGAATAGAGACTGGCACATTCCGTAAAAACGCCTACGATTG
CGATGACGGGACGTTTTTCAACGAAACCGGGGTAAGCTTGAGCTAA
back to top