mRNA_H-elongata_contig140067.2790.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.180e-25 Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 1
Query: 1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF--FNETG 408
PIFT A F SN A+ GGAV GS ++ D+S +F+ C FI NRA ATGGAI+SA G A ++TF+GN A GG LRL+G ++ F +NIS+ GG A+S IGS L +E TF N +DCD G + +N +G
Sbjct: 613 PIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASG 754
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 106 bits (265), Expect = 4.930e-24 Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF 393
P F N TF SN A+ GGAV + GS S D+ +FE C F+GNRA ATGGAI+SA G TTF N A GGALRL+G +N F EN S+ +GG A+S IG+ E +F N +DC GTF
Sbjct: 967 PAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTF 1101
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 2.270e-18 Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 1 PIFTNATFRSNLAETGGAVFITGSST---SLDDDDMSASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTFFNETGVSLS 420
P F++ F SN A+ GGAV GS +D + +F C F NRA ATGGA++SA+G T FRGN+A GGALRL+G + F ENIS+ G A+S +G I +F N ++C TF N T S +
Sbjct: 2290 PTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNYTFTSAA 2432
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 5.460e-18 Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 1 PIFTNATFRSNLAETGGAVFITGSST---SLDDDDMSASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTFFNET 405
P F++ F SN A+ GGAV GS +D + +F C F NRA ATGGA++SA+G T FRGN+A GGALRL+G + F EN+S+ G A+S +G I TF N ++C TF N T
Sbjct: 377 PTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT 514
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 6.630e-17 Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 1
Query: 7 FTNATFRSNLAETGGAVFITGSSTSLDDDDMS----ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSGATMMNESIFEENISELDGGQAISFIGSELRIETGTFRKNAYDCDDGTF--FNET 405
F +F SN A+ GGAV GS S +D+ +F+ C F+GNRA ATGGAI++A G TTF N A GGALRL+G + F EN S GG A+S IG E F N +DC G F +NE+
Sbjct: 778 FPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNES 916
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.850e-8 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 1 PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMS---ASFEGCVFIGNRAEATGGAIESATGTAAITSTTFRGNEARNGGALRLSG 249
P F N + SN A+ GGA+ + GS TS + +D + +F+ C F+ NRA ATGG +++ATG + ++ F N A GALRL+G
Sbjct: 118 PTFVNVSLISNWAQVGGAISLIGSGTSFNPEDYTPAPTTFDQCRFLSNRAIATGGTVDTATGQDRVVNSVFEDNTAGTDGALRLAG 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140067.2790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140067.2790.1 >prot_H-elongata_contig140067.2790.1 ID=prot_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp PIFTNATFRSNLAETGGAVFITGSSTSLDDDDMSASFEGCVFIGNRAEATback to top mRNA from alignment at H-elongata_contig140067:129..551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140067.2790.1 ID=mRNA_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig140067:129..551+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140067:129..551+ >mRNA_H-elongata_contig140067.2790.1 ID=mRNA_H-elongata_contig140067.2790.1|Name=mRNA_H-elongata_contig140067.2790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig140067:129..551+ (Himanthalia elongata Himel1 dioecious)back to top |