mRNA_H-elongata_contig140063.2789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140063.2789.1
Unique NamemRNA_H-elongata_contig140063.2789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: D7FT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT96_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.470e-49
Identity = 87/102 (85.29%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            G+HLDLL+LTVHKLLVAGS+RLS+LYHCFLTVLCNVSPY K +SL+ASVKLL+LF+LFTS GNLYASE NQTYVSLLLEMFSNI+QYQY GNAHL+YAIVRR
Sbjct:  499 GSHLDLLILTVHKLLVAGSDRLSTLYHCFLTVLCNVSPYAKGLSLIASVKLLSLFELFTSPGNLYASEANQTYVSLLLEMFSNIIQYQYVGNAHLVYAIVRR 600
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S3YDM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDM8_HETAK)

HSP 1 Score: 146 bits (369), Expect = 1.910e-40
Identity = 66/103 (64.08%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:   28 KGTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            +GTH D L++T+ K++V G+++LSSLYHCFLT++CN+SPYCK +SLVASVKL+NLF+ F+S    ++SETN  +V+LLLE+F+NI+QYQYAGN HL+YAIVRR
Sbjct:  228 QGTHADFLIVTLQKIIVTGTDKLSSLYHCFLTIVCNISPYCKTLSLVASVKLVNLFETFSSPRFFFSSETNHLFVALLLEIFNNIIQYQYAGNPHLVYAIVRR 330
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S2DH80_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH80_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.260e-40
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    7 LPLILPK-KGTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            LP+ LP   GTH DLLV+ +HK++V G+++LS LY+CFLT++CNVSPYCK +SLV+SVKL+NLF+LFTS   LYA+E N  YV+LLLE+F+N+VQYQYAGN HL+YAIVRR
Sbjct:  462 LPIELPLFSGTHTDLLVVVLHKMVVNGTDKLSPLYNCFLTIICNVSPYCKTLSLVSSVKLVNLFELFTSHRFLYAAEGNHVYVALLLEVFNNVVQYQYAGNPHLVYAIVRR 572
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S2SIN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIN5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.180e-39
Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            GTH DL+V+ +HKL+V G ++LS LY+CFLT++CN+SPYCK +S VASVKL++LF+LFTS   LYA+E N  YV+LLLE+F+NIVQYQY GN HL+YAIVRR
Sbjct:   11 GTHCDLIVIALHKLVVNGLDKLSPLYNCFLTIICNLSPYCKCLSAVASVKLVSLFELFTSPRFLYAAEGNHLYVALLLEIFNNIVQYQYTGNPHLIYAIVRR 112
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: F0Y4A0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4A0_AURAN)

HSP 1 Score: 143 bits (361), Expect = 1.860e-37
Identity = 68/102 (66.67%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            G+H+DLLV+ +HK++V G +RL+ LY+CFLTVLCN+SPY K + LVA+VKL+NLF+LFTS   LYA+E N  YVSLLLE+F+N++QYQY GNAHL+YAIVRR
Sbjct: 1163 GSHVDLLVVVLHKMVVNGGDRLAPLYNCFLTVLCNLSPYAKCIDLVAAVKLVNLFELFTSPKFLYAAEANHVYVSLLLELFNNVIQYQYGGNAHLVYAIVRR 1264
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S2UYH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYH4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.870e-37
Identity = 69/111 (62.16%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    7 LPLILPK-KGTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            LP+ LP  KG   D L++ +HK++V GSE+LSSLYHCF+T++CN+SPY K++SLVASVK++NLF+LFTS   LY +E+N  + SLLLE+F+N+VQYQY GN HL+YAIVRR
Sbjct:  486 LPMELPIFKGNFADFLIVVLHKMIVTGSEKLSSLYHCFMTIVCNISPYTKSLSLVASVKMVNLFELFTSPRILYGAESNYLFASLLLEIFNNLVQYQYGGNQHLVYAIVRR 596
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A8J2SMX9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMX9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.930e-37
Identity = 69/111 (62.16%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    7 LPLILPK-KGTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            LP  LP+ +GTH DL+V+ +H+++V+G +RL  LY+CFLTVLCNVSPY +++SLVA+VKL++LF+LFTS   LYA+E NQ +V+LLLE+F+N++QYQY GN+HL+YAIVRR
Sbjct:  418 LPTDLPRFEGTHADLVVVVLHRMVVSGGDRLQPLYNCFLTVLCNVSPYARSLSLVAAVKLVSLFELFTSPRILYAAEGNQGHVALLLEIFNNLIQYQYGGNSHLIYAIVRR 528
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S2SIR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.050e-37
Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            GTH DL+V+ +HKL+V G ++LS LY+CFLT++CN+SPYCK +S VASVKL++LF+LFTS   LYA+E N  YV+LLLE+F+NIVQYQY GN HL+YAIVRR
Sbjct:  504 GTHCDLIVIALHKLVVNGLDKLSPLYNCFLTIICNLSPYCKCLSAVASVKLVSLFELFTSPRFLYAAEGNHLYVALLLEIFNNIVQYQYTGNPHLIYAIVRR 605
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A482RWD8_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD8_9ARCH)

HSP 1 Score: 131 bits (330), Expect = 4.880e-36
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            G H DLLV+ +HK++V+G+E LS+LY CFLT++CN+SPYCK +S VA+VKL+NLF LF S   LYA+E N  YV LLLE F+NIVQYQY GN +L++ I+R+
Sbjct:   75 GNHADLLVVVLHKMIVSGTESLSALYSCFLTIICNISPYCKALSSVAAVKLVNLFCLFVSPKFLYAAEGNHVYVGLLLETFNNIVQYQYEGNGNLIFGIIRK 176
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BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Match: A0A7S3JVS4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVS4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.210e-35
Identity = 61/102 (59.80%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:   31 GTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYCKNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYAGNAHLMYAIVRR 336
            GTH DL+++T+HK++V G ++LS LY+CFLT++CN+SPY K +SLV  VK++NLF+LFTS    Y S  N  YV+LLLE+F+N++QYQY GN HL+YAIVRR
Sbjct:  461 GTHADLIIITLHKMIVNGGDKLSPLYNCFLTIICNISPYAKTLSLVTCVKVVNLFELFTSPRFFYQSANNHVYVALLLEIFNNVIQYQYGGNPHLIYAIVRR 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140063.2789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT96_ECTSI1.470e-4985.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YDM8_HETAK1.910e-4064.08Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2DH80_9STRA4.260e-4066.67Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2SIN5_9STRA7.180e-3966.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y4A0_AURAN1.860e-3766.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2UYH4_9STRA1.870e-3762.16Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2SMX9_9STRA5.930e-3762.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SIR3_9STRA8.050e-3766.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482RWD8_9ARCH4.880e-3660.78Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3JVS4_9STRA3.210e-3559.80Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140063contigH-elongata_contig140063:368..1577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue9.7e-42
Seed eggNOG ortholog2880.D7FT96
Preferred nameHID1
GOsGO:0000138,GO:0000139,GO:0002119,GO:0002164,GO:0002791,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006810,GO:0006886,GO:0006950,GO:0007275,GO:0007588,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0019898,GO:0030421,GO:0031001,GO:0031090,GO:0031312,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032879,GO:0033036,GO:0034613,GO:0035690,GO:0040011,GO:0040024,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043005,GO:0043051,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046677,GO:0046907,GO:0048519,GO:0048521,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060259,GO:0065007,GO:0070727,GO:0070887,GO:0071241,GO:0071244,GO:0071702,GO:0071705,GO:0072347,GO:0090087,GO:0090498,GO:0097458,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901700,GO:1901701,GO:1903745,GO:1903998,GO:1903999,GO:2000252
EggNOG free text desc.response to brefeldin A
EggNOG OGsKOG2226@1,KOG2226@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.8853745-CDS-H-elongata_contig140063:367..5821622929832.8853745-CDS-H-elongata_contig140063:367..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140063 368..582 +
1691679176.0242357-CDS-H-elongata_contig140063:367..5821691679176.0242357-CDS-H-elongata_contig140063:367..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140063 368..582 +
1622929832.9010415-CDS-H-elongata_contig140063:1456..15771622929832.9010415-CDS-H-elongata_contig140063:1456..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140063 1457..1577 +
1691679176.0353024-CDS-H-elongata_contig140063:1456..15771691679176.0353024-CDS-H-elongata_contig140063:1456..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140063 1457..1577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140063.2789.1prot_H-elongata_contig140063.2789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140063 368..1577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140063.2789.1

>prot_H-elongata_contig140063.2789.1 ID=prot_H-elongata_contig140063.2789.1|Name=mRNA_H-elongata_contig140063.2789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
LPLPLILPKKGTHLDLLVLTVHKLLVAGSERLSSLYHCFLTVLCNVSPYC
KNMSLVASVKLLNLFQLFTSRGNLYASETNQTYVSLLLEMFSNIVQYQYA
GNAHLMYAIVRR
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mRNA from alignment at H-elongata_contig140063:368..1577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140063.2789.1 ID=mRNA_H-elongata_contig140063.2789.1|Name=mRNA_H-elongata_contig140063.2789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig140063:368..1577+ (Himanthalia elongata Himel1 dioecious)
CTCCCCCTCCCTCTCATTTTACCGAAAAAAGGTACCCATCTGGACCTGCT
GGTCCTGACGGTGCATAAGCTGCTGGTGGCGGGGTCGGAGAGGTTGTCGA
GCCTGTACCACTGCTTCCTGACGGTGCTATGCAACGTGTCCCCTTACTGT
AAGAACATGAGCCTCGTCGCCTCCGTCAAGCTTCTCAATCTGTTCCAGCT
CTTCACCAGCCGCGGGTAATTGGGGGCGAGGCGCCTTTCTCCAAGTAATC
TGGTGTAAATTTAGATGACCACGTGTTGAAGAAAAAGGGGTTCTTTGCCG
TAGTGCTGTAGTTACACCAACCGGCAAATAGTTTCGCGTCTTTCCGGTTT
CTTCTGCATGCTAAAATCGAGTTAATTATATTTTGAGGGGGTGTGGGGGT
GTACGGACTGTAAATTATAGCTAAGGTGCGTGTTGGAGGAGTTCGGCGAC
TCGACTCGGGTGATCGCGGTTCAGCAAGGTGAAGCATTGCTAGAGTGTTC
GAACTGGTGTTGTATTTGTGCAGGCGTTAGTCTACTCCGGCAGGCGTTAT
GGCAGAAGTATTTTCACGTGGCATCTACGTCACGTCGCGTCCTTACGTCG
TCATACACGATCGATCTAGAATAGGGAGGGTGGGGGGGGGAGGAGCAAAA
GCCAGTCGCAAACCCTTGCCCGACCTGATCTCGACCCTTGAACCTTGACC
CTCCTTGGCCGCGTGAATCCTCCCGATCGCTTCGTTTCCCCTCTCCAAAT
CCCGTCCTCCTTTACCTCTTGTTGCATATACTGTTGTGTGATGTTTGTAT
TCGTGCTGCACATTCATTGGGGGGGGGGTCGTCATCTCCTCGACCCCTCC
CCCCTCCCCTTGATCCCTGATCGTGATACAGAGTGTTCGCAACGTTGATG
TACATTTAGATAACGTACTGTATTAGATATACAGATGTATGAATCCACGA
GCACTTCCTCCGCACCCAATCTCATCCCTATCTCCTTCCCGTCTTTTTGC
GTAACGCCTTTTCTGGGACGAACTCTTCCGGCGCTGATTGTTGTGACACT
GGTGGCTGGCTGGCTGACTGACTGGCTGTTGTCTCTCAGGAACCTATACG
CCTCCGAGACGAATCAGACATATGTGTCCCTCTTGCTGGAGATGTTTTCG
AATATCGTCCAGTACCAGTACGCGGGCAACGCGCACCTCATGTACGCGAT
CGTGCGCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig140063:368..1577+

>mRNA_H-elongata_contig140063.2789.1 ID=mRNA_H-elongata_contig140063.2789.1|Name=mRNA_H-elongata_contig140063.2789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig140063:368..1577+ (Himanthalia elongata Himel1 dioecious)
CTCCCCCTCCCTCTCATTTTACCGAAAAAAGGTACCCATCTGGACCTGCT
GGTCCTGACGGTGCATAAGCTGCTGGTGGCGGGGTCGGAGAGGTTGTCGA
GCCTGTACCACTGCTTCCTGACGGTGCTATGCAACGTGTCCCCTTACTGT
AAGAACATGAGCCTCGTCGCCTCCGTCAAGCTTCTCAATCTGTTCCAGCT
CTTCACCAGCCGCGGCTCCCCCTCCCTCTCATTTTACCGAAAAAAGGTAC
CCATCTGGACCTGCTGGTCCTGACGGTGCATAAGCTGCTGGTGGCGGGGT
CGGAGAGGTTGTCGAGCCTGTACCACTGCTTCCTGACGGTGCTATGCAAC
GTGTCCCCTTACTGTAAGAACATGAGCCTCGTCGCCTCCGTCAAGCTTCT
CAATCTGTTCCAGCTCTTCACCAGCCGCGGGAACCTATACGCCTCCGAGA
CGAATCAGACATATGTGTCCCTCTTGCTGGAGATGTTTTCGAATATCGTC
CAGTACCAGTACGCGGGCAACGCGCACCTCATGTACGCGATCGTGCGCCG
CGAACCTATACGCCTCCGAGACGAATCAGACATATGTGTCCCTCTTGCTG
GAGATGTTTTCGAATATCGTCCAGTACCAGTACGCGGGCAACGCGCACCT
CATGTACGCGATCGTGCGCCGC
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