mRNA_H-elongata_contig139968.2784.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9VUK9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUK9_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 6.630e-10 Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK--KTGLSLVTPNPTRFATNLISAMRTFKVR 270
M C+ H +DLL+EDI K +WAA+II+ +V+K+ K H +T R+ K L L+ P TRF T + R + R
Sbjct: 38 MPCAVHCIDLLLEDIGKLDWAAEIIEEGKDVVKYFKAHQWTLGELRQISKVKLELLLPGDTRFGTEFLMVSRAVEKR 114
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9V4L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4L6_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 6.450e-9 Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK-KTGLSLVTPNPTRFATNLISAMRTFKVR 270
+ C+AH +DLL+EDI K WAA +++ V+KF++ H + AL R + L+ P TRF T+ + R + R
Sbjct: 17 LPCAAHCLDLLLEDIGKLPWAAQLVEHGRSVVKFIRGHEWCLALVRSIGSKKELLFPGETRFGTHYLMLSRLVEKR 92
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: UPI001AD930D2 (uncharacterized protein LOC121049819 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD930D2) HSP 1 Score: 60.1 bits (144), Expect = 7.780e-9 Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 31 CRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRKKTGLSLVTPNPTRFATNLIS 246
C L ++C+AH +DL+ EDI KQE + ++K V ++ NH + A R T L+ P TRFATN I+
Sbjct: 153 CPLFWIRCAAHCIDLIFEDIGKQETVSTVVKWAQSVTNYIYNHGWVLAEMRSITKGDLIRPGKTRFATNHIA 224
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9YWY1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YWY1_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 2.030e-8 Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK--KTGLS--LVTPNPTRFATNLISAMRTFKVR 270
+ CSAH +DLL+EDI K WAA +++ ++K+V++H +++AL R+ +TG L++P TRF T + R + R
Sbjct: 133 LPCSAHCLDLLLEDIGKLTWAAKMVETGRFIVKYVRSHEWSNALVRQYARTGSKKELLSPGDTRFGTEYLMLSRLVEKR 211
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388L851_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L851_CHABU) HSP 1 Score: 59.7 bits (143), Expect = 2.130e-8 Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALF------RKKTGLSLVTPNPTRFA 231
+ ++ + C+AH + LL++DI+K W + I+KR ++KF+KNHH T ALF KKT LV P RFA
Sbjct: 260 IAKIPRVPCAAHTLSLLLKDISKLSWVSKIVKRAKMMVKFIKNHHRTVALFSACSFEEKKT---LVMPTEVRFA 330
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388K5Z3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5Z3_CHABU) HSP 1 Score: 57.8 bits (138), Expect = 1.020e-7 Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK---KTGLSLVTPNPTRFA 231
+ R+ + C+AH + LL++ IAK W A I+KR ++KF++NHH T ALF + +L+ P RFA
Sbjct: 380 IARIPWVPCAAHTLSLLLKGIAKLSWVATIVKRVKMMVKFIRNHHCTVALFSACSLEEMKTLIMPTKVRFA 450
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388LPK1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LPK1_CHABU) HSP 1 Score: 56.6 bits (135), Expect = 2.500e-7 Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 1
Query: 43 GMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNH-HFTSALFRKKTGLSLVTPNPTRFATNLI 243
M C+AH++DL++E K W I+K++ EV+KF NH L G L P TRFATN I
Sbjct: 243 SMPCTAHSIDLMLEQFGKIGWVDVILKKSAEVVKFFMNHTRVRDLLLVNSQGAILARPGATRFATNFI 310
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388KTL1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KTL1_CHABU) HSP 1 Score: 56.6 bits (135), Expect = 2.520e-7 Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 52 CSAHAVDLLMEDIAKQ-EWAADIIKRNLEVIKFVKNHHFTSALFRKKTG-LSLVTPNPTRFATNLI 243
C+AHA+DL +ED+ K W A+I+KR + KFV NH LF K+G + + P TRFATN+I
Sbjct: 250 CTAHALDLALEDMDKHIPWFAEIVKRGNVLGKFVMNHDKVRTLFLTKSGGVQIKRPGVTRFATNII 315
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388M3U7_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M3U7_CHABU) HSP 1 Score: 56.6 bits (135), Expect = 2.610e-7 Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 1
Query: 46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRKKTGLSLVTPNPTRFATNLISAMR 255
++C AH +DL++EDI W A I + V KF K H KKT L L+ P TRF TN+I R
Sbjct: 555 IRCVAHVMDLILEDIGSIGWVASRIAQARLVTKFFKRHSHAREALEKKTKLKLLLPAETRFGTNVIMIRR 624
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388KII2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KII2_CHABU) HSP 1 Score: 56.6 bits (135), Expect = 2.620e-7 Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK---KTGLSLVTPNPTRF 228
+ R+ + C+AH + LL++ IAK W A I+KR ++KF++NHH T ALF + +L+ P RF
Sbjct: 744 IARIPXVXCAAHTLSLLLKGIAKLPWVATIVKRVKMMVKFIRNHHRTMALFSACSLEETKTLIMPTXVRF 813 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139968.2784.1 >prot_H-elongata_contig139968.2784.1 ID=prot_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp VLVYPPPLLLCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVback to top mRNA from alignment at H-elongata_contig139968:894..1163- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139968.2784.1 ID=mRNA_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig139968:894..1163- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139968:894..1163- >mRNA_H-elongata_contig139968.2784.1 ID=mRNA_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig139968:894..1163- (Himanthalia elongata Himel1 dioecious)back to top |