mRNA_H-elongata_contig139964.2783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139964.2783.1
Unique NamemRNA_H-elongata_contig139964.2783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.320e-11
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   61 GYYFKPGAYVQVNCPAISAVEWHPFSLFPLSG 156
            GY ++PGAYVQVNCPAIS  EWHPFSLFP+ G
Sbjct:    5 GYKYQPGAYVQVNCPAISVSEWHPFSLFPVPG 36
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   61 GYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGS 159
            GY +KPGAYVQVNCPAIS  EWHPFSLFP+ GS
Sbjct:  466 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGS 498
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.130e-10
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   61 GYYFKPGAYVQVNCPAISAVEWHPFSLFPLSG 156
            GY +KPGAYVQVNCPAIS  EWHPFSLFP+ G
Sbjct:  478 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPG 509
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   61 GYYFKPGAYVQVNCPAISAVEWHPFSLFPLSG 156
            GY FK G+Y+QVNCPAISA EWHPFS+FP+ G
Sbjct:  221 GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPG 252
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   61 GYYFKPGAYVQVNCPAISAVEWHPFSLFPLSG 156
            GY F  G+Y+QVNCPAISA EWHPFS+FP+ G
Sbjct:  454 GYQFNVGSYIQVNCPAISAKEWHPFSMFPVPG 485
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: A0A1U7TK62_CARSF (NADPH oxidase 3 n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A1U7TK62_CARSF)

HSP 1 Score: 50.4 bits (119), Expect = 8.890e-6
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   25 PPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSL 141
            P  ++ L +K RG+   PG Y+ V CPAIS++EWHPF+L
Sbjct:  301 PSGVLELHMKKRGFKMAPGQYILVQCPAISSLEWHPFTL 339
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: NOX3_HUMAN (NADPH oxidase 3 n=41 Tax=Simiiformes TaxID=314293 RepID=NOX3_HUMAN)

HSP 1 Score: 50.4 bits (119), Expect = 8.900e-6
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   25 PPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSL 141
            P  ++ L +K RG+   PG Y+ V CPAIS++EWHPF+L
Sbjct:  302 PSGVLELHMKKRGFKMAPGQYILVQCPAISSLEWHPFTL 340
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: UPI00063F03C9 (NADPH oxidase 3 n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063F03C9)

HSP 1 Score: 50.4 bits (119), Expect = 8.920e-6
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   25 PPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSL 141
            P  ++ L +K RG+   PG Y+ V CPAIS++EWHPF+L
Sbjct:  420 PSGVLELHMKKRGFKMAPGQYILVQCPAISSLEWHPFTL 458
[Close]
BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: UPI00035A0489 (cytochrome b-245 heavy chain n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A0489)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   19 TSPPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSE 162
            T P  +  L ++ +G+   PG Y+ + CPA+S +EWHPF+L    G E
Sbjct:  294 THPSQVFELQMQKKGFRAAPGQYILIQCPAVSKLEWHPFTLTSAPGDE 341
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BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Match: A0A834QZF7_MARMO (FAD-binding FR-type domain-containing protein n=2 Tax=Marmota monax TaxID=9995 RepID=A0A834QZF7_MARMO)

HSP 1 Score: 49.3 bits (116), Expect = 2.270e-5
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 PPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSL 141
            P  ++ L +K RG+   PG Y+ + CP+IS +EWHPF+L
Sbjct:  198 PSAVLELHMKKRGFKMAPGQYILIQCPSISPLEWHPFTL 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139964.2783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D0_ECTSI4.320e-1178.13Putative respiratory burst oxidase homolog protein... [more]
D7G8C8_ECTSI6.110e-1181.82Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JHI2_9PHAE2.130e-1081.25FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C4_ECTSI2.600e-975.00Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE1.240e-871.88FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
A0A1U7TK62_CARSF8.890e-651.28NADPH oxidase 3 n=1 Tax=Carlito syrichta TaxID=186... [more]
NOX3_HUMAN8.900e-651.28NADPH oxidase 3 n=41 Tax=Simiiformes TaxID=314293 ... [more]
UPI00063F03C98.920e-651.28NADPH oxidase 3 n=1 Tax=Propithecus coquereli TaxI... [more]
UPI00035A04891.670e-539.58cytochrome b-245 heavy chain n=1 Tax=Aplysia calif... [more]
A0A834QZF7_MARMO2.270e-546.15FAD-binding FR-type domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139964contigH-elongata_contig139964:387..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue4e-09
Seed eggNOG ortholog2880.D7G8C8
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.1698139-CDS-H-elongata_contig139964:386..5481622929832.1698139-CDS-H-elongata_contig139964:386..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139964 387..548 -
1691679175.7660224-CDS-H-elongata_contig139964:386..5481691679175.7660224-CDS-H-elongata_contig139964:386..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139964 387..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139964.2783.1prot_H-elongata_contig139964.2783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139964 387..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139964.2783.1

>prot_H-elongata_contig139964.2783.1 ID=prot_H-elongata_contig139964.2783.1|Name=mRNA_H-elongata_contig139964.2783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RNRLHPTSPPLLMMLSIKSRGYYFKPGAYVQVNCPAISAVEWHPFSLFPL
SGSE
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mRNA from alignment at H-elongata_contig139964:387..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139964.2783.1 ID=mRNA_H-elongata_contig139964.2783.1|Name=mRNA_H-elongata_contig139964.2783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig139964:387..548- (Himanthalia elongata Himel1 dioecious)
CGCAACCGTCTCCACCCTACCTCTCCTCCCCTTTTGATGATGCTCTCGAT
CAAATCTAGGGGATACTATTTCAAGCCGGGCGCGTACGTCCAAGTCAATT
GCCCCGCGATCAGCGCGGTAGAGTGGCATCCATTCTCCCTTTTCCCCTTG
TCCGGTTCGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig139964:387..548-

>mRNA_H-elongata_contig139964.2783.1 ID=mRNA_H-elongata_contig139964.2783.1|Name=mRNA_H-elongata_contig139964.2783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig139964:387..548- (Himanthalia elongata Himel1 dioecious)
CGCAACCGTCTCCACCCTACCTCTCCTCCCCTTTTGATGATGCTCTCGAT
CAAATCTAGGGGATACTATTTCAAGCCGGGCGCGTACGTCCAAGTCAATT
GCCCCGCGATCAGCGCGGTAGAGTGGCATCCATTCTCCCTTTTCCCCTTG
TCCGGTTCGGAACGCAACCGTCTCCACCCTACCTCTCCTCCCCTTTTGAT
GATGCTCTCGATCAAATCTAGGGGATACTATTTCAAGCCGGGCGCGTACG
TCCAAGTCAATTGCCCCGCGATCAGCGCGGTAGAGTGGCATCCATTCTCC
CTTTTCCCCTTGTCCGGTTCGGAA
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