mRNA_H-elongata_contig139952.2782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139952.2782.1
Unique NamemRNA_H-elongata_contig139952.2782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139952.2782.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-15
Identity = 52/153 (33.99%), Postives = 74/153 (48.37%), Query Frame = 1 
Query:   46 WEAARRGILSPIKLALDCGGTFDARSD-------SGDEGLEKALLPIAGIRDEPLDWAAEPNAAARALLLKAQTDPVNIRQFLRRKAAELAEPCRHATPLPRWDPRHPNLHTTCGVQQADLIASVNMEQAFERQKERAAAGDDVPYVLAHTLR 483
            W     G+      A   G    A S        S D+  ++ L  +  + DEP   A +    ++ALL  A  +   +R  L  +A   A+ C   TP P WD   P+  TTCG QQA +IA V+++   +RQKER + GD+V YVLA T+R
Sbjct:   22 WLVVSEGVTDVADAAEGQGAAAAAASTPSLDGNGSQDDEFDEELATL--LADEP-PRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVR 171
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BLAST of mRNA_H-elongata_contig139952.2782.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 9.930e-14
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:  127 SGDEGLEKALLPIAGIRDEPLDWAAEPNAAARALLLKAQTDPVNIRQFLRRKAAELAEPCRHATPLPRWDPRHPNLHTTCGVQQADLIASVNMEQAFERQKERAAAGDDVPYVLAHTLRS 486
            S DE L+  L  +  + DEP   AA+ +  A ALL  A  +P  +R  LR +A   A+ C   TPL +W             QQA +IA V+++   +RQK R + GD+VPYVLA T+RS
Sbjct:   23 SQDEELDDELATL--VADEP-PRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRS 139
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BLAST of mRNA_H-elongata_contig139952.2782.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-12
Identity = 53/133 (39.85%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:   88 ALDCGGTFDARSDSGDEGLEKALLPIAGIRDEPLDWAAEPNAAARALLLKAQTDPVNIRQFLRRKAAELAEPCRHATPLPRWDPRHPNLHTTCGVQQADLIASVNMEQAFERQKERAAAGDDVPYVLAHTLRS 486
            +LD  G+ D   D  DE L   L       DEP   AA     A+ALL   Q +P  +R  L+ +A   A+ C   TP P WD   P+  TTCG QQA +IA V+++       ER + GD+V YVLA T+RS
Sbjct:   49 SLDGDGSQD---DEFDEELATLLA------DEP-PRAANQTPLAKALL---QANPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ-------ERDSQGDNVSYVLARTVRS 161
[Close]
BLAST of mRNA_H-elongata_contig139952.2782.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-6
Identity = 40/128 (31.25%), Postives = 58/128 (45.31%), Query Frame = 1 
Query:   46 WEAARRGILSPIKLALDCGGTFDARSD-------SGDEGLEKALLPIAGIRDEPLDWAAEPNAAARALLLKAQTDPVNIRQFLRRKAAELAEPCRHATPLPRWDPRHPNLHTTCGVQQADLIASVNME 408
            W     G+      A   G    A S        S D+  ++ L  +  + DEP   AA+    A+ALL  A  +P  +R  L+ +A   A+ C   TP P W    P+  TTCG QQA +IA V+++
Sbjct:   22 WLVVSEGVADVADAAEGQGAAAAAASTPSLDGNGSQDDEFDEELATL--LADEP-PRAAKQTPLAKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQ 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139952.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.000e-1533.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI9.930e-1439.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE3.550e-1239.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E2_9PHAE1.310e-631.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139952contigH-elongata_contig139952:442..1349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.095904-CDS-H-elongata_contig139952:441..8491622929832.095904-CDS-H-elongata_contig139952:441..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139952 442..849 +
1691679175.7465115-CDS-H-elongata_contig139952:441..8491691679175.7465115-CDS-H-elongata_contig139952:441..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139952 442..849 +
1622929832.116267-CDS-H-elongata_contig139952:1271..13491622929832.116267-CDS-H-elongata_contig139952:1271..1349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139952 1272..1349 +
1691679175.75654-CDS-H-elongata_contig139952:1271..13491691679175.75654-CDS-H-elongata_contig139952:1271..1349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139952 1272..1349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139952.2782.1prot_H-elongata_contig139952.2782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139952 442..1349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139952.2782.1

>prot_H-elongata_contig139952.2782.1 ID=prot_H-elongata_contig139952.2782.1|Name=mRNA_H-elongata_contig139952.2782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MSPSATRSQRGRVLSWEAARRGILSPIKLALDCGGTFDARSDSGDEGLEK
ALLPIAGIRDEPLDWAAEPNAAARALLLKAQTDPVNIRQFLRRKAAELAE
PCRHATPLPRWDPRHPNLHTTCGVQQADLIASVNMEQAFERQKERAAAGD
DVPYVLAHTLRS
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mRNA from alignment at H-elongata_contig139952:442..1349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139952.2782.1 ID=mRNA_H-elongata_contig139952.2782.1|Name=mRNA_H-elongata_contig139952.2782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig139952:442..1349+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCTTCGGCAACAAGGAGTCAGAGGGGTCGGGTGCTGAGTTGGGA
GGCGGCTCGGAGGGGGATACTGAGCCCCATAAAGTTGGCGCTGGATTGCG
GTGGAACCTTCGATGCCAGGTCTGACAGTGGCGATGAGGGGCTCGAAAAA
GCGTTGTTGCCGATAGCCGGCATTCGGGACGAGCCGCTCGACTGGGCGGC
AGAACCCAATGCTGCCGCCCGTGCCCTGCTCTTGAAAGCCCAGACTGACC
CAGTAAACATCCGCCAGTTCCTCCGAAGGAAAGCGGCTGAGCTCGCTGAA
CCGTGCAGACACGCGACCCCGCTGCCTCGTTGGGACCCGAGGCATCCCAA
TCTACACACCACCTGCGGCGTTCAGCAGGCGGATCTAATAGCGAGCGTAA
ATATGGAAGTGAGATGCATCTTTGTTTGTGAGGTGGATACAAGTACTTTT
ATTTTGTAGTGTGTCACTGCTGTATCCGCTCTTGTACATACTTTGTACTT
TATTTGTTTATTATGGTAGTACAGCAGTAGTAGTGCCCTCCCTTTGACGC
CTCTCATGACGAAAACGTGGGGTGTTTCCTTCTTCGTCGCTGCACTACGG
ACAACTATCTCGCTCTCAACTTTTCAGTCGAAGTGTATTCGCTCAAATAT
GGGTTCCTGGTTGATACCGCTATAATACCATATGTTGCTGCTTTATACTA
GTTAGTATATATATATATACGATGTGTTGTATCACGCAGGAGGTGTCTTG
GCCCCGTCTATTGCTTGGTGTGGCGACCTTTGATATTTGCACCCTTCCTA
CCCCTACCGATGCGTTCCATTAATTTCCAGCAAGCATTCGAACGGCAAAA
AGAGCGCGCAGCTGCCGGCGATGACGTGCCATATGTCCTAGCTCACACCC
TGAGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig139952:442..1349+

>mRNA_H-elongata_contig139952.2782.1 ID=mRNA_H-elongata_contig139952.2782.1|Name=mRNA_H-elongata_contig139952.2782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig139952:442..1349+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCTTCGGCAACAAGGAGTCAGAGGGGTCGGGTGCTGAGTTGGGA
GGCGGCTCGGAGGGGGATACTGAGCCCCATAAAGTTGGCGCTGGATTGCG
GTGGAACCTTCGATGCCAGGTCTGACAGTGGCGATGAGGGGCTCGAAAAA
GCGTTGTTGCCGATAGCCGGCATTCGGGACGAGCCGCTCGACTGGGCGGC
AGAACCCAATGCTGCCGCCCGTGCCCTGCTCTTGAAAGCCCAGACTGACC
CAGTAAACATCCGCCAGTTCCTCCGAAGGAAAGCGGCTGAGCTCGCTGAA
CCGTGCAGACACGCGACCCCGCTGCCTCGTTGGGACCCGAGGCATCCCAA
TCTACACACCACCTGCGGCGTTCAGCAGGCGGATCTAATAGCGAGCGTAA
ATATGGAAATGTCTCCTTCGGCAACAAGGAGTCAGAGGGGTCGGGTGCTG
AGTTGGGAGGCGGCTCGGAGGGGGATACTGAGCCCCATAAAGTTGGCGCT
GGATTGCGGTGGAACCTTCGATGCCAGGTCTGACAGTGGCGATGAGGGGC
TCGAAAAAGCGTTGTTGCCGATAGCCGGCATTCGGGACGAGCCGCTCGAC
TGGGCGGCAGAACCCAATGCTGCCGCCCGTGCCCTGCTCTTGAAAGCCCA
GACTGACCCAGTAAACATCCGCCAGTTCCTCCGAAGGAAAGCGGCTGAGC
TCGCTGAACCGTGCAGACACGCGACCCCGCTGCCTCGTTGGGACCCGAGG
CATCCCAATCTACACACCACCTGCGGCGTTCAGCAGGCGGATCTAATAGC
GAGCGTAAATATGGAACAAGCATTCGAACGGCAAAAAGAGCGCGCAGCTG
CCGGCGATGACGTGCCATATGTCCTAGCTCACACCCTGAGGAGCCAAGCA
TTCGAACGGCAAAAAGAGCGCGCAGCTGCCGGCGATGACGTGCCATATGT
CCTAGCTCACACCCTGAGGAGC
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