mRNA_H-elongata_contig139929.2780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139929.2780.1
Unique NamemRNA_H-elongata_contig139929.2780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: D7FPX6_ECTSI (Protein-serine/threonine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX6_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 1.390e-89
Identity = 136/152 (89.47%), Postives = 143/152 (94.08%), Query Frame = 1 
Query:    1 DRRIADVPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            D   + VPSHLHYIMLE+IKNSMRATVDFHGLD MD+NPIRVVIADGE NEDVVIKVADEGGGIRRS M RIWSYLFTTADPAVQ+GFI++GE +SDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP
Sbjct:  334 DLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEGNEDVVIKVADEGGGIRRSYMTRIWSYLFTTADPAVQEGFINLGEVESDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 485
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A836CE82_9STRA (Protein-serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE82_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.260e-87
Identity = 129/152 (84.87%), Postives = 142/152 (93.42%), Query Frame = 1 
Query:    1 DRRIADVPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            D   + VPSHLHYIM+E+IKNSMRATV++HGLD +D  PIR+VIADGE+NEDVVIKVADEGGGIRRS MNRIWSYLFTTADPAVQKGFI++GE +SDHAKESPLAGLGYGLPISRSYARYFGGDLS++SMEGYGTDAFVH SRLGHHSEPLP
Sbjct:  237 DLTFSYVPSHLHYIMMELIKNSMRATVEYHGLDEIDMYPIRIVIADGEENEDVVIKVADEGGGIRRSYMNRIWSYLFTTADPAVQKGFIELGEVESDHAKESPLAGLGYGLPISRSYARYFGGDLSVMSMEGYGTDAFVHCSRLGHHSEPLP 388
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7S2XX23_9STRA (Protein-serine/threonine kinase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX23_9STRA)

HSP 1 Score: 231 bits (590), Expect = 7.040e-76
Identity = 112/146 (76.71%), Postives = 127/146 (86.99%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            VP+HLHYI++E++KNSMRAT+DFHG    +  PIR++IADGE NEDVVIKV+DEGGGI+RS MNRIWSYLFTTADP +Q GFI + E   D  K SPLAGLGYGLPISRSYARYFGGDLSI+SMEGYGTDAFVHLSRLG+H EPLP
Sbjct:    8 VPTHLHYILMELLKNSMRATMDFHGA-ADEVPPIRIIIADGESNEDVVIKVSDEGGGIQRSLMNRIWSYLFTTADPDIQAGFISMDEDNCDFNKASPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVHLSRLGNHDEPLP 152
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7S3YIQ1_HETAK (Protein-serine/threonine kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIQ1_HETAK)

HSP 1 Score: 232 bits (591), Expect = 2.480e-72
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGET-QSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            VP HLHY+++EI+KNSMRATV++HG+D  D  PIRVVIADGE NEDVVIK++DEGGGI RS M +IWSYLFTTADPA+QKGF+ + E  +SDH   SPLAGLGYGLPISRSYARYFGGDLS++SMEGYGTDAF+HLSRLG H EPLP
Sbjct:  285 VPQHLHYVLMEILKNSMRATVEYHGIDA-DMPPIRVVIADGETNEDVVIKISDEGGGIPRSIMTKIWSYLFTTADPAIQKGFVRMDERGESDHDTGSPLAGLGYGLPISRSYARYFGGDLSVMSMEGYGTDAFIHLSRLGDHDEPLP 430
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7S2LDN2_9STRA (Protein-serine/threonine kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDN2_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.590e-71
Identity = 108/146 (73.97%), Postives = 130/146 (89.04%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            VP+HLHYIMLE++KNSMRATVD+HG+D  D  P++V+IADG++NEDVVIKV+DEGGGI RSNM RIWSYLFTTADPA+Q+G +   + Q DH+ +SPLAGLGYGLPISRSYARYFGGD+S++SMEGYGTDAFVHL+RLG+  E LP
Sbjct:  111 VPTHLHYIMLELLKNSMRATVDWHGVDS-DYPPVKVIIADGKENEDVVIKVSDEGGGIPRSNMPRIWSYLFTTADPAIQEGMVAFND-QVDHSIDSPLAGLGYGLPISRSYARYFGGDMSVISMEGYGTDAFVHLTRLGNRRELLP 254
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: W7TC29_9STRA (Protein-serine/threonine kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC29_9STRA)

HSP 1 Score: 229 bits (585), Expect = 3.000e-71
Identity = 111/152 (73.03%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:    1 DRRIADVPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            D   A V  H+HYI+LE++KNSMRAT +FHG D M   PIR+VIADGE NEDVVIKV+DEGGGI RS+++RIWSYLFTTADP +Q+GF+D+    SD    SPLAGLGYGLPISR+YARYFGGDLSI+SMEGYGTDAFVHLSRLG+H EPLP
Sbjct:  297 DLTFAYVSEHVHYILLELLKNSMRATAEFHGTDDMP--PIRIVIADGEDNEDVVIKVSDEGGGIPRSHISRIWSYLFTTADPEIQRGFVDLSHPASDFDTASPLAGLGYGLPISRAYARYFGGDLSIMSMEGYGTDAFVHLSRLGNHDEPLP 446
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7S4RJ49_9STRA (Protein-serine/threonine kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RJ49_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.800e-70
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            VP+HLHYI LE++KNSMRATVD+HG+D  D  PI+VVIADG +NEDVVIKV+DEGGGI RSNMN+IWSYLFTTADPAVQ+G +   E   DHA +SPLAGLGYGLPISRSYARYFGGDLSI+SMEGYGTDAFV+L+RLG+  EPLP
Sbjct:  265 VPTHLHYITLELLKNSMRATVDWHGVDA-DYPPIKVVIADGRENEDVVIKVSDEGGGIPRSNMNKIWSYLFTTADPAVQEGMVAFQE-HDDHAVDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVYLTRLGNTREPLP 408
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: K0SW91_THAOC (Protein-serine/threonine kinase n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0SW91_THAOC)

HSP 1 Score: 218 bits (556), Expect = 2.200e-70
Identity = 108/146 (73.97%), Postives = 124/146 (84.93%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            VP+HLHYIMLE++KNSMRATV+ HG+D  D  PI+VVIADG  NEDV+IKV+DEGGGI RSNM RIWSYLFTTADP +Q+G +   E   DH+ +SPLAGLGYGLPISRSYARYFGGDLSI+SMEGYGTD FV+L+RLG   EPLP
Sbjct:   30 VPTHLHYIMLELLKNSMRATVEHHGVDA-DYPPIKVVIADGSDNEDVIIKVSDEGGGIPRSNMKRIWSYLFTTADPEIQEGMVAFNENV-DHSIDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDCFVYLTRLGDTKEPLP 173
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7R9U3H0_9STRA (Protein-serine/threonine kinase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H0_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.810e-70
Identity = 108/153 (70.59%), Postives = 129/153 (84.31%), Query Frame = 1 
Query:    1 DRRIADVPSHLHYIMLEIIKNSMRATVDFHG-LDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 456
            DR  A VP+HLHYI+LE++KNSMRAT +FH   D + D  +R+++ADG+ NEDVV+KV DEGGGI RS+M RIWSYLFTTADPAVQKGF+++G  + DH   SPLAGLGYGLPISRSYARYFGGD+ I+SMEGYGTDAFVHL+RLG+  EPLP
Sbjct:  289 DRSFAYVPTHLHYILLELLKNSMRATCEFHAHKDRLPD--VRIIVADGDANEDVVLKVCDEGGGIARSHMRRIWSYLFTTADPAVQKGFVEIGGAEGDHDTHSPLAGLGYGLPISRSYARYFGGDMQIMSMEGYGTDAFVHLNRLGNADEPLP 439
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BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Match: A0A7S2URZ2_9STRA (Protein-serine/threonine kinase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URZ2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 6.470e-70
Identity = 113/145 (77.93%), Postives = 130/145 (89.66%), Query Frame = 1 
Query:   19 VPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKNEDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPL 453
            VP+HLHYIMLE++KNSMRATVD+HG+D  D  PI+VVIADG++NEDVVIKV+DEGGGI RSNMNRIWSYLFTTADPA+Q+G +   E   DH+ +SPLAGLGYGLPISRSYARYFGGDLSI+SMEGYGTDAFVHL+RLG+  EPL
Sbjct:  371 VPTHLHYIMLELLKNSMRATVDWHGVDA-DYPPIKVVIADGKENEDVVIKVSDEGGGIPRSNMNRIWSYLFTTADPAIQEGMVAFNENV-DHSIDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVHLTRLGNTREPL 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139929.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPX6_ECTSI1.390e-8989.47Protein-serine/threonine kinase n=2 Tax=Ectocarpus... [more]
A0A836CE82_9STRA1.260e-8784.87Protein-serine/threonine kinase n=1 Tax=Tribonema ... [more]
A0A7S2XX23_9STRA7.040e-7676.71Protein-serine/threonine kinase n=1 Tax=Fibrocapsa... [more]
A0A7S3YIQ1_HETAK2.480e-7276.19Protein-serine/threonine kinase n=1 Tax=Heterosigm... [more]
A0A7S2LDN2_9STRA1.590e-7173.97Protein-serine/threonine kinase n=1 Tax=Leptocylin... [more]
W7TC29_9STRA3.000e-7173.03Protein-serine/threonine kinase n=2 Tax=Monodopsid... [more]
A0A7S4RJ49_9STRA1.800e-7077.40Protein-serine/threonine kinase n=1 Tax=Ditylum br... [more]
K0SW91_THAOC2.200e-7073.97Protein-serine/threonine kinase n=2 Tax=Thalassios... [more]
A0A7R9U3H0_9STRA2.810e-7070.59Protein-serine/threonine kinase n=1 Tax=Pinguiococ... [more]
A0A7S2URZ2_9STRA6.470e-7077.93Protein-serine/threonine kinase n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139929contigH-elongata_contig139929:170..1039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.7e-55
Seed eggNOG ortholog2850.Phatr50961
Preferred namePDK2
KEGG koko:K00898,ko:K12077
KEGG Pathwayko04066,ko04360,ko05230,map04066,map04360,map05230
GOsGO:0000166,GO:0000302,GO:0001101,GO:0001666,GO:0001678,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004740,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0005967,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006109,GO:0006111,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006464,GO:0006468,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006885,GO:0006915,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008286,GO:0008631,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009927,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010510,GO:0010565,GO:0010646,GO:0010675,GO:0010906,GO:0010941,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018130,GO:0018193,GO:0018209,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0023051,GO:0023052,GO:0030522,GO:0030554,GO:0030808,GO:0031323,GO:0031326,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033500,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034103,GO:0034248,GO:0034284,GO:0034599,GO:0034614,GO:0034641,GO:0034654,GO:0035357,GO:0035383,GO:0035384,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036473,GO:0042221,GO:0042304,GO:0042592,GO:0042593,GO:0042594,GO:0042762,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045124,GO:0045254,GO:0046320,GO:0046390,GO:0046483,GO:0046777,GO:0046850,GO:0046890,GO:0046982,GO:0046983,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050812,GO:0050848,GO:0050896,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051239,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055086,GO:0060089,GO:0060548,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070542,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071396,GO:0071398,GO:0071417,GO:0071453,GO:0071456,GO:0071495,GO:0071496,GO:0071616,GO:0071704,GO:0071944,GO:0072331,GO:0072332,GO:0072521,GO:0072522,GO:0072593,GO:0080090,GO:0090407,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0097411,GO:0098771,GO:0098798,GO:0140096,GO:1900371,GO:1900542,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1990204,GO:2000209,GO:2000377,GO:2000811
EggNOG free text desc.Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
EggNOG OGs2XBFV@2836,COG0642@1,KOG0787@2759
EC2.7.11.2
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size459
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139929.2780.1prot_H-elongata_contig139929.2780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139929 170..1039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.9248483-CDS-H-elongata_contig139929:169..3221622929831.9248483-CDS-H-elongata_contig139929:169..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 170..322 +
1691679175.6617768-CDS-H-elongata_contig139929:169..3221691679175.6617768-CDS-H-elongata_contig139929:169..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 170..322 +
1622929831.945995-CDS-H-elongata_contig139929:527..6971622929831.945995-CDS-H-elongata_contig139929:527..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 528..697 +
1691679175.6785784-CDS-H-elongata_contig139929:527..6971691679175.6785784-CDS-H-elongata_contig139929:527..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 528..697 +
1622929831.9626567-CDS-H-elongata_contig139929:903..10391622929831.9626567-CDS-H-elongata_contig139929:903..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 904..1039 +
1691679175.695747-CDS-H-elongata_contig139929:903..10391691679175.695747-CDS-H-elongata_contig139929:903..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139929 904..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139929.2780.1

>prot_H-elongata_contig139929.2780.1 ID=prot_H-elongata_contig139929.2780.1|Name=mRNA_H-elongata_contig139929.2780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
DRRIADVPSHLHYIMLEIIKNSMRATVDFHGLDGMDDNPIRVVIADGEKN
EDVVIKVADEGGGIRRSNMNRIWSYLFTTADPAVQKGFIDVGETQSDHAK
ESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEP
LP*
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mRNA from alignment at H-elongata_contig139929:170..1039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139929.2780.1 ID=mRNA_H-elongata_contig139929.2780.1|Name=mRNA_H-elongata_contig139929.2780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig139929:170..1039+ (Himanthalia elongata Himel1 dioecious)
GACCGACGTATCGCAGATGTGCCGTCTCACTTACATTACATCATGCTGGA
GATAATCAAGAACTCGATGCGAGCGACGGTCGATTTCCACGGCCTTGACG
GGATGGACGACAATCCCATCCGCGTGGTCATCGCAGACGGCGAAAAAAAC
GAGGTATTCCTGGTGGAGCTCGGACAAGCGCTGCTGCGCGCCGTTTTGAC
GATACGATTTAAATCATTTTGTTGACTTGATACGATATGTGCACGGGACG
AGGATAAATTTAGAGCTGGACAACGGCCGCGACCGCTTTCCCCGCCATTG
AATGATCTGAGGCGGGATATAGTCGAACCACTTCCTCCGACGTCGTCTCG
AGAAACAGGATGTCGTCATCAAGGTCGCGGACGAGGGAGGGGGGATCCGC
CGCTCGAACATGAACCGCATCTGGAGCTATCTCTTCACCACGGCCGATCC
TGCCGTGCAAAAAGGTTTCATCGACGTCGGGGAAACGCAGAGCGATCACG
CCAAGGAATCTCCGCTGGCCGGCCTTGGGTGAGTTGCAAGTTGCATTCCT
ACCGCCGCGGCTCCATTTTCCCCCTTCTCCAAGTAGGCAAGGTACACCTA
CCTCACTTTCCCCGTTGCCCTGTCACTAAAATACATTTTTTCCGGGAGGT
CTTTTTTCATTTGTCTGCATGATCTACAAGTAATACATTATTTTATTTCA
ATTTTTACTTTCTAATAATGTGCCAAAACCTCAGCTACGGCTTGCCCATC
AGCCGGAGCTACGCGCGGTACTTCGGCGGGGACCTCAGCATCGTCTCCAT
GGAAGGCTACGGGACAGACGCCTTTGTACACCTGAGCCGCTTAGGTCATC
ACTCCGAGCCGCTACCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig139929:170..1039+

>mRNA_H-elongata_contig139929.2780.1 ID=mRNA_H-elongata_contig139929.2780.1|Name=mRNA_H-elongata_contig139929.2780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig139929:170..1039+ (Himanthalia elongata Himel1 dioecious)
GACCGACGTATCGCAGATGTGCCGTCTCACTTACATTACATCATGCTGGA
GATAATCAAGAACTCGATGCGAGCGACGGTCGATTTCCACGGCCTTGACG
GGATGGACGACAATCCCATCCGCGTGGTCATCGCAGACGGCGAAAAAAAC
GAGGACCGACGTATCGCAGATGTGCCGTCTCACTTACATTACATCATGCT
GGAGATAATCAAGAACTCGATGCGAGCGACGGTCGATTTCCACGGCCTTG
ACGGGATGGACGACAATCCCATCCGCGTGGTCATCGCAGACGGCGAAAAA
AACGAGGATGTCGTCATCAAGGTCGCGGACGAGGGAGGGGGGATCCGCCG
CTCGAACATGAACCGCATCTGGAGCTATCTCTTCACCACGGCCGATCCTG
CCGTGCAAAAAGGTTTCATCGACGTCGGGGAAACGCAGAGCGATCACGCC
AAGGAATCTCCGCTGGCCGGCCTTGGGATGTCGTCATCAAGGTCGCGGAC
GAGGGAGGGGGGATCCGCCGCTCGAACATGAACCGCATCTGGAGCTATCT
CTTCACCACGGCCGATCCTGCCGTGCAAAAAGGTTTCATCGACGTCGGGG
AAACGCAGAGCGATCACGCCAAGGAATCTCCGCTGGCCGGCCTTGGCTAC
GGCTTGCCCATCAGCCGGAGCTACGCGCGGTACTTCGGCGGGGACCTCAG
CATCGTCTCCATGGAAGGCTACGGGACAGACGCCTTTGTACACCTGAGCC
GCTTAGGTCATCACTCCGAGCCGCTACCCTAGCTACGGCTTGCCCATCAG
CCGGAGCTACGCGCGGTACTTCGGCGGGGACCTCAGCATCGTCTCCATGG
AAGGCTACGGGACAGACGCCTTTGTACACCTGAGCCGCTTAGGTCATCAC
TCCGAGCCGCTACCCTAG
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