mRNA_H-elongata_contig139909.2779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139909.2779.1
Unique NamemRNA_H-elongata_contig139909.2779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139909.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139909contigH-elongata_contig139909:800..1540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139909.2779.1prot_H-elongata_contig139909.2779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139909 885..1268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.843207-UTR-H-elongata_contig139909:799..8841622929831.843207-UTR-H-elongata_contig139909:799..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139909 800..884 +
1691679175.6268673-UTR-H-elongata_contig139909:799..8841691679175.6268673-UTR-H-elongata_contig139909:799..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139909 800..884 +
1622929831.8752565-UTR-H-elongata_contig139909:1268..15401622929831.8752565-UTR-H-elongata_contig139909:1268..1540Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139909 1269..1540 +
1691679175.6459346-UTR-H-elongata_contig139909:1268..15401691679175.6459346-UTR-H-elongata_contig139909:1268..1540Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139909 1269..1540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.8603525-CDS-H-elongata_contig139909:884..12681622929831.8603525-CDS-H-elongata_contig139909:884..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139909 885..1268 +
1691679175.636523-CDS-H-elongata_contig139909:884..12681691679175.636523-CDS-H-elongata_contig139909:884..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139909 885..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139909.2779.1

>prot_H-elongata_contig139909.2779.1 ID=prot_H-elongata_contig139909.2779.1|Name=mRNA_H-elongata_contig139909.2779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MVPSRTVPHCTTPYPKCHAGPHDCLPLLRHTKHVEPQRYPITVLSLCVAV
PIIPYRSAGYFITPYGTDPTMLCHTMPYARLQSCLTGFYGTISYHTVQLV
PYHAVPYRTTPHCAGVQYLNLLLRTIP*
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mRNA from alignment at H-elongata_contig139909:800..1540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139909.2779.1 ID=mRNA_H-elongata_contig139909.2779.1|Name=mRNA_H-elongata_contig139909.2779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at H-elongata_contig139909:800..1540+ (Himanthalia elongata Himel1 dioecious)
CTGCAGCTGCACAATGACGTCGTAGATGGAGTAAAGTCCGTTCCCCTCTT
GCCGCCATCCAGGTACCGTTTCCTCACCGTACTGTATGGTACCAAGCCGT
ACCGTTCCGCACTGTACCACACCGTACCCTAAATGCCACGCTGGGCCGCA
CGATTGCTTACCTTTGTTGCGCCACACAAAACATGTCGAACCACAACGTT
ACCCAATCACCGTCTTGAGTTTGTGCGTTGCCGTGCCGATAATTCCGTAC
CGTAGCGCAGGATACTTTATCACGCCCTACGGTACCGACCCTACCATGTT
GTGCCATACCATGCCGTACGCCCGTCTCCAGTCGTGCCTTACTGGGTTTT
ACGGGACTATTTCATACCATACCGTACAGTTAGTACCATACCACGCGGTA
CCGTATCGAACCACACCGCACTGTGCCGGTGTACAGTACTTGAACCTATT
GCTCCGTACGATACCATAACGAATTGGGTGTTTCGGGCGCGGTATTGTCA
GCAAGCAACGAACAACCCGGTGCTCTGGGTGCTCTATATTTTCGGTGTTG
GATTTGGTTTACACGTTTATTGGTTTATTTCAAGTCAGGTGCGCCGTTAC
AAGTTTCGGGCCTTTAACCACCGGTACACTAGATATAGCTCCTCTAGGAC
CCTGGGAAACAAGCCATGAATCGAATTCCAAGCTTAACCGTGAATCCTCT
TTTGTATGCTGCCGTTCGATCGTTTCGCCGTCTGCTCATGT
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Coding sequence (CDS) from alignment at H-elongata_contig139909:800..1540+

>mRNA_H-elongata_contig139909.2779.1 ID=mRNA_H-elongata_contig139909.2779.1|Name=mRNA_H-elongata_contig139909.2779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig139909:800..1540+ (Himanthalia elongata Himel1 dioecious)
ATGGTACCAAGCCGTACCGTTCCGCACTGTACCACACCGTACCCTAAATG
CCACGCTGGGCCGCACGATTGCTTACCTTTGTTGCGCCACACAAAACATG
TCGAACCACAACGTTACCCAATCACCGTCTTGAGTTTGTGCGTTGCCGTG
CCGATAATTCCGTACCGTAGCGCAGGATACTTTATCACGCCCTACGGTAC
CGACCCTACCATGTTGTGCCATACCATGCCGTACGCCCGTCTCCAGTCGT
GCCTTACTGGGTTTTACGGGACTATTTCATACCATACCGTACAGTTAGTA
CCATACCACGCGGTACCGTATCGAACCACACCGCACTGTGCCGGTGTACA
GTACTTGAACCTATTGCTCCGTACGATACCATAAATGGTACCAAGCCGTA
CCGTTCCGCACTGTACCACACCGTACCCTAAATGCCACGCTGGGCCGCAC
GATTGCTTACCTTTGTTGCGCCACACAAAACATGTCGAACCACAACGTTA
CCCAATCACCGTCTTGAGTTTGTGCGTTGCCGTGCCGATAATTCCGTACC
GTAGCGCAGGATACTTTATCACGCCCTACGGTACCGACCCTACCATGTTG
TGCCATACCATGCCGTACGCCCGTCTCCAGTCGTGCCTTACTGGGTTTTA
CGGGACTATTTCATACCATACCGTACAGTTAGTACCATACCACGCGGTAC
CGTATCGAACCACACCGCACTGTGCCGGTGTACAGTACTTGAACCTATTG
CTCCGTACGATACCATAA
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