mRNA_H-elongata_contig139895.2778.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI) HSP 1 Score: 166 bits (419), Expect = 2.410e-46 Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
+TGAYTGYQLLWVLLLAHI+GL+LQSLAAR+GVVTGTHLADVCRT+Y RP ALLLWVM E AIIGSDIQEV+GSAIGLQILFGIPLWVGCLLT
Sbjct: 118 QTGAYTGYQLLWVLLLAHILGLVLQSLAARIGVVTGTHLADVCRTHYDRPAALLLWVMMEVAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 210
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA) HSP 1 Score: 139 bits (351), Expect = 9.860e-37 Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
+TGAYTGYQL+WVLLLAH+ GLLLQS+A+RLGVVTG HLA + R Y RP +LLLW+M E AIIGSDIQEV+GSAI LQIL G+PLW GC++T
Sbjct: 66 QTGAYTGYQLIWVLLLAHMFGLLLQSMASRLGVVTGNHLAGIARLNYKRPASLLLWLMAELAIIGSDIQEVLGSAIALQILTGVPLWAGCVIT 158
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A1V9YM96_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YM96_9STRA) HSP 1 Score: 133 bits (335), Expect = 9.560e-35 Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
+ GAY GY+L+WVL A ++G LQ+LAARLGVVTG HLA+VC T YPR + +LWVMTE AI+GSDIQEV+GSAI LQILF +PLW+GCL+TG
Sbjct: 81 QAGAYGGYELIWVLFGATVLGFFLQTLAARLGVVTGKHLAEVCHTMYPRWASFILWVMTEIAIVGSDIQEVLGSAIALQILFSLPLWLGCLITG 174
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7S2X831_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X831_9EUKA) HSP 1 Score: 125 bits (313), Expect = 9.720e-35 Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCL 273
+ GAYTGYQLLWVL ++ +GL Q LAARLGVVTG +LA +CR YPR +L LWVMTE AIIGSDIQE++GSA+ QILFG PLW+GCL
Sbjct: 63 QAGAYTGYQLLWVLFMSTAVGLYFQILAARLGVVTGRNLAQMCRLAYPRWASLGLWVMTELAIIGSDIQEIIGSAVAFQILFGFPLWLGCL 153
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A1V9ZYU6_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU6_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.100e-34 Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
+ GAY+ YQL+WVLL A +MG LQ+L+ARLGVVTG HLA+VCR YPR + +LW+MTE AI+GSDIQEV+GSAI LQILFG+PLW GCL+TG
Sbjct: 569 QAGAYSRYQLIWVLLGATVMGFFLQTLSARLGVVTGKHLAEVCREMYPRWASYILWIMTEIAIVGSDIQEVLGSAIALQILFGLPLWAGCLVTG 662
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7J6RAF5_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RAF5_PEROL) HSP 1 Score: 125 bits (313), Expect = 3.460e-34 Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
++GA+TGYQ+LWVLLLAHI+GL+LQ L+ RL VTG HLA+ CR YPR A +LW+MTE AIIGSDIQEV+G+AI ++LF IPLW G ++T
Sbjct: 89 QSGAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEIAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A5D6XI84_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI84_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.200e-33 Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
+ GAY GYQL+WVL A +MG LQ LAARLGVVTG +LA++C YPR +L+LW+MTE AI+GSDIQEV+GSAI Q+LFG PLWVGCL+TG
Sbjct: 104 QAGAYGGYQLIWVLFAATVMGFFLQVLAARLGVVTGKNLAEMCTARYPRWASLVLWIMTEIAIVGSDIQEVLGSAIAFQLLFGFPLWVGCLVTG 197
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7J6UGL9_PEROL (Uncharacterized protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UGL9_PEROL) HSP 1 Score: 125 bits (313), Expect = 2.800e-33 Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
++GA+TGYQ+LWVLLLAHI+GL+LQ L+ RL VTG HLA+ CR YPR A +LW+MTE AIIGSDIQEV+G+AI ++LF IPLW G ++T
Sbjct: 89 QSGAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEVAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A418EA93_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EA93_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.750e-33 Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
+ GAY GYQL+WVLL A IMG LQ L+ARLGVVTG +LA++C YPR + +LW M E AI+GSDIQEV+GSAI LQILF +PLW+GCL+T
Sbjct: 99 QAGAYGGYQLIWVLLGATIMGFFLQVLSARLGVVTGKNLAEMCHLMYPRWTSRVLWFMAEVAIVGSDIQEVLGSAIALQILFKLPLWIGCLIT 191
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL) HSP 1 Score: 128 bits (322), Expect = 7.340e-33 Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
+ GAY GYQL+WVL + +MG LQ LAARLGVVTG +LA+VC + YPR +L+LWVMTE AIIGSDIQEV+GSAI QILF PLW+GCL+TG
Sbjct: 97 QAGAYGGYQLIWVLFASTVMGFYLQILAARLGVVTGKNLAEVCTSEYPRWASLVLWVMTEIAIIGSDIQEVLGSAIAFQILFNFPLWLGCLITG 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139895.2778.1 >prot_H-elongata_contig139895.2778.1 ID=prot_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPback to top mRNA from alignment at H-elongata_contig139895:298..579- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139895.2778.1 ID=mRNA_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig139895:298..579- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139895:298..579- >mRNA_H-elongata_contig139895.2778.1 ID=mRNA_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig139895:298..579- (Himanthalia elongata Himel1 dioecious)back to top |