mRNA_H-elongata_contig139863.2777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139863.2777.1
Unique NamemRNA_H-elongata_contig139863.2777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: D7FKS5_ECTSI (WD repeat, SAM and U-box domain containing 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.070e-26
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query:   16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
            VRG ALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPK G P
Sbjct:    8 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQP 59          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A835Z8M7_9STRA (WD repeat, SAM and U-box domain-containing 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.530e-23
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query:   16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
            V+G  LRDEF+CPITRELMRDPVIAADGHTYDREAIEMWLR HDTSPK G P
Sbjct:    8 VKGHRLRDEFACPITRELMRDPVIAADGHTYDREAIEMWLRTHDTSPKAGQP 59          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S1XUU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUU4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-19
Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVG 165
            VRG  LRDEF CPITRELM+DPVIAADGHTYDR AIE WL NH  SPK G
Sbjct:   44 VRGGQLRDEFVCPITRELMKDPVIAADGHTYDRSAIEQWLLNHRRSPKTG 93          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   10 KQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
            K++ G  LRD F+CPIT ELMRDPV+  DGHTYDREAIEMWLR + TSPK G P
Sbjct: 1035 KEMHGFTLRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEP 1088          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A6S8S2A9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S2A9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.010e-17
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   31 LRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVG 165
            LRDEF+CPITR+LMR PVIA+DGHTYDR+AIE WL  HDTSPK G
Sbjct:   38 LRDEFTCPITRQLMRQPVIASDGHTYDRQAIETWLLTHDTSPKSG 82          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: F0Y484_AURAN (U-box domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y484_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 4.220e-17
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   37 DEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGL 168
            D + CPITRELM DPV A+DGHTY+R+AI+ WL +HDTSPK GL
Sbjct:    2 DAYVCPITRELMHDPVFASDGHTYERDAIQQWLISHDTSPKTGL 45          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S3MFD7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFD7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.780e-17
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    7 RKQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
            + +++G+ +RDEF CPIT ELMRDPV+A+DGHTY++ AIE WL+NH  SP+ G P
Sbjct:   31 KNRLKGMKIRDEFICPITYELMRDPVVASDGHTYEKAAIEKWLKNHKISPRSGEP 85          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A482RTF3_9ARCH (FHA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF3_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 8.460e-17
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   10 KQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
            K +RG+ +RDEF CPIT ELMR+PV+A+DGHTY++ AI+ WL+ + TSP+ G P
Sbjct:   16 KVMRGMKIRDEFLCPITYELMREPVVASDGHTYEKNAIDKWLKTNHTSPRSGEP 69          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S1ZGI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZGI0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.530e-16
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   19 RGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLR---------NHDTSPKVGLPATSE 183
            +G  +RDEF+CPITREL+ DPVIAADGHTYDR+AIE WL          NH T PK   P T E
Sbjct:   28 KGYKIRDEFTCPITRELISDPVIAADGHTYDRKAIEQWLHSSRSSSHHPNHYTKPKTTSPKTGE 91          
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7R9YX93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YX93_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.240e-16
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   37 DEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLPATS 180
            D F CPITRE+M DPVI ADGHTY+R AI+MWLR    SPK   P TS
Sbjct:   41 DAFLCPITREIMTDPVICADGHTYERHAIDMWLRTSSRSPKTNQPLTS 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS5_ECTSI7.070e-2694.23WD repeat, SAM and U-box domain containing 1 n=1 T... [more]
A0A835Z8M7_9STRA1.530e-2386.54WD repeat, SAM and U-box domain-containing 1 n=1 T... [more]
A0A7S1XUU4_9STRA1.910e-1980.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7FNJ7_ECTSI3.300e-1970.37Armadillo/beta-catenin repeat family protein / U-b... [more]
A0A6S8S2A9_9STRA1.010e-1780.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y484_AURAN4.220e-1770.45U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3MFD7_9STRA4.780e-1760.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482RTF3_9ARCH8.460e-1759.26FHA domain-containing protein (Fragment) n=1 Tax=a... [more]
A0A7S1ZGI0_9STRA2.530e-1659.38Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9YX93_9STRA8.240e-1666.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139863contigH-elongata_contig139863:49..231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7FKS5
Preferred nameKIAA1107
KEGG koko:K10480
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0167@1,KOG0167@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.7307646-CDS-H-elongata_contig139863:48..2311622929831.7307646-CDS-H-elongata_contig139863:48..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139863 49..231 +
1691679175.591796-CDS-H-elongata_contig139863:48..2311691679175.591796-CDS-H-elongata_contig139863:48..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139863 49..231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139863.2777.1prot_H-elongata_contig139863.2777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139863 49..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139863.2777.1

>prot_H-elongata_contig139863.2777.1 ID=prot_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
GSRKQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDT
SPKVGLPATSE
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mRNA from alignment at H-elongata_contig139863:49..231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139863.2777.1 ID=mRNA_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig139863:49..231+ (Himanthalia elongata Himel1 dioecious)
GGATCGCGGAAACAGGTTCGGGGCTTAGCCTTGAGGGATGAGTTTTCTTG CCCGATCACTCGGGAGCTCATGCGTGATCCGGTCATCGCGGCAGACGGTC ACACTTACGACAGAGAAGCCATCGAGATGTGGCTCCGAAATCATGACACG TCCCCGAAGGTAGGGTTGCCCGCGACTTCTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig139863:49..231+

>mRNA_H-elongata_contig139863.2777.1 ID=mRNA_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig139863:49..231+ (Himanthalia elongata Himel1 dioecious)
GGATCGCGGAAACAGGTTCGGGGCTTAGCCTTGAGGGATGAGTTTTCTTG
CCCGATCACTCGGGAGCTCATGCGTGATCCGGTCATCGCGGCAGACGGTC
ACACTTACGACAGAGAAGCCATCGAGATGTGGCTCCGAAATCATGACACG
TCCCCGAAGGTAGGGTTGCCCGCGACTTCTGAAGGATCGCGGAAACAGGT
TCGGGGCTTAGCCTTGAGGGATGAGTTTTCTTGCCCGATCACTCGGGAGC
TCATGCGTGATCCGGTCATCGCGGCAGACGGTCACACTTACGACAGAGAA
GCCATCGAGATGTGGCTCCGAAATCATGACACGTCCCCGAAGGTAGGGTT
GCCCGCGACTTCTGAA
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