mRNA_H-elongata_contig139863.2777.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: D7FKS5_ECTSI (WD repeat, SAM and U-box domain containing 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS5_ECTSI) HSP 1 Score: 107 bits (268), Expect = 7.070e-26 Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query: 16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
VRG ALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPK G P
Sbjct: 8 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQP 59
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A835Z8M7_9STRA (WD repeat, SAM and U-box domain-containing 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M7_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.530e-23 Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
V+G LRDEF+CPITRELMRDPVIAADGHTYDREAIEMWLR HDTSPK G P
Sbjct: 8 VKGHRLRDEFACPITRELMRDPVIAADGHTYDREAIEMWLRTHDTSPKAGQP 59
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S1XUU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUU4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.910e-19 Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 16 VRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVG 165
VRG LRDEF CPITRELM+DPVIAADGHTYDR AIE WL NH SPK G
Sbjct: 44 VRGGQLRDEFVCPITRELMKDPVIAADGHTYDRSAIEQWLLNHRRSPKTG 93
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 3.300e-19 Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 10 KQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
K++ G LRD F+CPIT ELMRDPV+ DGHTYDREAIEMWLR + TSPK G P
Sbjct: 1035 KEMHGFTLRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEP 1088
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A6S8S2A9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S2A9_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.010e-17 Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1
Query: 31 LRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVG 165
LRDEF+CPITR+LMR PVIA+DGHTYDR+AIE WL HDTSPK G
Sbjct: 38 LRDEFTCPITRQLMRQPVIASDGHTYDRQAIETWLLTHDTSPKSG 82
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: F0Y484_AURAN (U-box domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y484_AURAN) HSP 1 Score: 76.3 bits (186), Expect = 4.220e-17 Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 37 DEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGL 168
D + CPITRELM DPV A+DGHTY+R+AI+ WL +HDTSPK GL
Sbjct: 2 DAYVCPITRELMHDPVFASDGHTYERDAIQQWLISHDTSPKTGL 45
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S3MFD7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFD7_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.780e-17 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 7 RKQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
+ +++G+ +RDEF CPIT ELMRDPV+A+DGHTY++ AIE WL+NH SP+ G P
Sbjct: 31 KNRLKGMKIRDEFICPITYELMRDPVVASDGHTYEKAAIEKWLKNHKISPRSGEP 85
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A482RTF3_9ARCH (FHA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF3_9ARCH) HSP 1 Score: 79.3 bits (194), Expect = 8.460e-17 Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query: 10 KQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLP 171
K +RG+ +RDEF CPIT ELMR+PV+A+DGHTY++ AI+ WL+ + TSP+ G P
Sbjct: 16 KVMRGMKIRDEFLCPITYELMREPVVASDGHTYEKNAIDKWLKTNHTSPRSGEP 69
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7S1ZGI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZGI0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.530e-16 Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 19 RGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLR---------NHDTSPKVGLPATSE 183
+G +RDEF+CPITREL+ DPVIAADGHTYDR+AIE WL NH T PK P T E
Sbjct: 28 KGYKIRDEFTCPITRELISDPVIAADGHTYDRKAIEQWLHSSRSSSHHPNHYTKPKTTSPKTGE 91
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Match: A0A7R9YX93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YX93_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 8.240e-16 Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 37 DEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKVGLPATS 180
D F CPITRE+M DPVI ADGHTY+R AI+MWLR SPK P TS
Sbjct: 41 DAFLCPITREIMTDPVICADGHTYERHAIDMWLRTSSRSPKTNQPLTS 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139863.2777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139863.2777.1 >prot_H-elongata_contig139863.2777.1 ID=prot_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp GSRKQVRGLALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTback to top mRNA from alignment at H-elongata_contig139863:49..231+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139863.2777.1 ID=mRNA_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig139863:49..231+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139863:49..231+ >mRNA_H-elongata_contig139863.2777.1 ID=mRNA_H-elongata_contig139863.2777.1|Name=mRNA_H-elongata_contig139863.2777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig139863:49..231+ (Himanthalia elongata Himel1 dioecious)back to top |