mRNA_H-elongata_contig139848.2774.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139848.2774.1
Unique NamemRNA_H-elongata_contig139848.2774.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: D8LC06_ECTSI (Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC06_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.300e-40
Identity = 67/83 (80.72%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            +VV+F DYDGTLSPIVD+PDKAF+ EGMR VLA+ AS+FTTAIVTGRSK+KVY FVGLDD+FYAGSHGLEIQGPL++PVKCQ+
Sbjct:   49 QVVLFLDYDGTLSPIVDQPDKAFMKEGMRPVLAQAASVFTTAIVTGRSKDKVYNFVGLDDVFYAGSHGLEIQGPLDRPVKCQM 131          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7S2D2V7_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2V7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.270e-32
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIV EPD+AF+ + MR VL +VAS+FTTAIVTGRS+EKVY+FV LDD++YAGSHG +I GPL+ P+ CQV
Sbjct:  110 VVFLDYDGTLSPIVKEPDRAFMKDTMRPVLQKVASMFTTAIVTGRSREKVYQFVQLDDVYYAGSHGFDISGPLKHPISCQV 190          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A662WPT2_9STRA (Trehalose 6-phosphate phosphatase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPT2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.550e-28
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIVD PD+AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G   +P+ CQV
Sbjct:   24 VVFLDYDGTLSPIVDVPDRAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKSRPINCQV 104          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A2P4Y0S3_9STRA (Trehalose 6-phosphate phosphatase n=18 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y0S3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.760e-28
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G   +P+ CQV
Sbjct:   15 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 95          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A3M6VKR0_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKR0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.000e-27
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIVD PD AF+ + MR+ L +++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G   +P+ CQV
Sbjct:   24 VVFLDYDGTLSPIVDVPDHAFMTDAMRTALIKLSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 104          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7J0EEN3_9ERIC (Trehalose 6-phosphate phosphatase n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0EEN3_9ERIC)

HSP 1 Score: 108 bits (269), Expect = 5.440e-27
Identity = 47/74 (63.51%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGP 222
            ++VVF DYDGTLSPIVD+PD+AF+ + MRS + E+A  F TAI++GRS++KVY+FV LD++FYAGSHG++I+GP
Sbjct:    9 RIVVFLDYDGTLSPIVDDPDRAFMSDPMRSAVREIARQFPTAIISGRSRDKVYEFVKLDEVFYAGSHGMDIRGP 82          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7S2WT46_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT46_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.080e-27
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPL-EKPVKCQV 249
            VVF DYDGTLSPIV EPD A + +GMRSVL  V++ +TTAI+TGRS+EKVY+FV LDD++YAGSHG +I GP  +  + CQV
Sbjct:  126 VVFLDYDGTLSPIVKEPDNAHMKDGMRSVLRRVSAAYTTAIITGRSREKVYQFVQLDDVYYAGSHGFDISGPDGDGSITCQV 207          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: UPI0005401C2A (probable trehalose-phosphate phosphatase H isoform X3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0005401C2A)

HSP 1 Score: 107 bits (266), Expect = 6.340e-27
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLE 228
            K+VVF DYDGTLSPIV++PD AF+ + MR+V+ EV   F T+I++GRS+EKVY+FVGLD+I+YAGSHG++I  PL+
Sbjct:   57 KIVVFLDYDGTLSPIVNDPDVAFMTDKMRAVVHEVGCCFPTSIISGRSREKVYEFVGLDNIYYAGSHGMDIMAPLQ 132          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A3F2RS21_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RS21_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.130e-26
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G   +P+ CQV
Sbjct:   24 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 104          
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: H3GW55_PHYRM (Trehalose 6-phosphate phosphatase n=2 Tax=Phytophthora TaxID=4783 RepID=H3GW55_PHYRM)

HSP 1 Score: 110 bits (276), Expect = 1.410e-26
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
            VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G   +P+ CQV
Sbjct:   81 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC06_ECTSI1.300e-4080.72Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarp... [more]
A0A7S2D2V7_9STRA1.270e-3271.60Trehalose 6-phosphate phosphatase n=1 Tax=Dictyoch... [more]
A0A662WPT2_9STRA1.550e-2864.20Trehalose 6-phosphate phosphatase n=2 Tax=Nothophy... [more]
A0A2P4Y0S3_9STRA4.760e-2864.20Trehalose 6-phosphate phosphatase n=18 Tax=Phytoph... [more]
A0A3M6VKR0_9STRA5.000e-2762.96Trehalose 6-phosphate phosphatase n=1 Tax=Peronosp... [more]
A0A7J0EEN3_9ERIC5.440e-2763.51Trehalose 6-phosphate phosphatase n=1 Tax=Actinidi... [more]
A0A7S2WT46_9STRA6.080e-2764.63Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochr... [more]
UPI0005401C2A6.340e-2763.16probable trehalose-phosphate phosphatase H isoform... [more]
A0A3F2RS21_9STRA1.130e-2664.20Trehalose 6-phosphate phosphatase n=1 Tax=Phytopht... [more]
H3GW55_PHYRM1.410e-2664.20Trehalose 6-phosphate phosphatase n=2 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139848contigH-elongata_contig139848:50..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size249
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139848.2774.1prot_H-elongata_contig139848.2774.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139848 91..455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.3928313-UTR-H-elongata_contig139848:49..901622929831.3928313-UTR-H-elongata_contig139848:49..90Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139848 50..90 -
1691679175.428656-UTR-H-elongata_contig139848:49..901691679175.428656-UTR-H-elongata_contig139848:49..90Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139848 50..90 -
1622929831.4391456-UTR-H-elongata_contig139848:455..5041622929831.4391456-UTR-H-elongata_contig139848:455..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139848 456..504 -
1691679175.465679-UTR-H-elongata_contig139848:455..5041691679175.465679-UTR-H-elongata_contig139848:455..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139848 456..504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.408458-CDS-H-elongata_contig139848:90..1961622929831.408458-CDS-H-elongata_contig139848:90..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139848 91..196 -
1691679175.4453921-CDS-H-elongata_contig139848:90..1961691679175.4453921-CDS-H-elongata_contig139848:90..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139848 91..196 -
1622929831.4246275-CDS-H-elongata_contig139848:402..4551622929831.4246275-CDS-H-elongata_contig139848:402..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139848 403..455 -
1691679175.4563007-CDS-H-elongata_contig139848:402..4551691679175.4563007-CDS-H-elongata_contig139848:402..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139848 403..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139848.2774.1

>prot_H-elongata_contig139848.2774.1 ID=prot_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MSPIRLSSWRVCDLCLQRWPPFSRRRSSQAEARRKCTSLLDWMTFSMPGV
TD*
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mRNA from alignment at H-elongata_contig139848:50..504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139848.2774.1 ID=mRNA_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig139848:50..504- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGGTTTTCTCGGACTATGACGGGACGTTGTCTCCGATTGTAGA TGAGCCCGATAAGGCTTTCATCCTGGAGGGTATGCGATCTGTGCTTGCAG AGGTACGTACAATAACGCCCACTTCGTGCTTGGAGTTTCAAGAAAAATAT TTCGTCAACGACAAAAATATTATATATAGAGATAAAGAGATGCGTGAATT CTAGGTGGGATTGTGTTTCAAGAAGCCGGCTTAGTCTTTACATTCGAGCC ATATTTCTATTACTAATACTAATACTATTAATTACTATTACTATTACTCT ATTTCTAGGTGGCCTCCCTTTTCACGACGGCGATCGTCACAGGCCGAAGC AAGGAGAAAGTGTACAAGTTTGTTGGATTGGATGACATTTTCTATGCCGG GAGTCACGGACTAGAAATCCAGGGCCCGTTAGAGAAGCCGGTCAAGTGCC AGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig139848:50..504-

>mRNA_H-elongata_contig139848.2774.1 ID=mRNA_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig139848:50..504- (Himanthalia elongata Himel1 dioecious)
ATGAGCCCGATAAGGCTTTCATCCTGGAGGGTATGCGATCTGTGCTTGCA
GAGATGAGCCCGATAAGGCTTTCATCCTGGAGGGTATGCGATCTGTGCTT
GCAGAGGTGGCCTCCCTTTTCACGACGGCGATCGTCACAGGCCGAAGCAA
GGAGAAAGTGTACAAGTTTGTTGGATTGGATGACATTTTCTATGCCGGGA
GTCACGGACTAGGTGGCCTCCCTTTTCACGACGGCGATCGTCACAGGCCG
AAGCAAGGAGAAAGTGTACAAGTTTGTTGGATTGGATGACATTTTCTATG
CCGGGAGTCACGGACTAG
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