mRNA_H-elongata_contig139848.2774.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: D8LC06_ECTSI (Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC06_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.300e-40 Identity = 67/83 (80.72%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
+VV+F DYDGTLSPIVD+PDKAF+ EGMR VLA+ AS+FTTAIVTGRSK+KVY FVGLDD+FYAGSHGLEIQGPL++PVKCQ+
Sbjct: 49 QVVLFLDYDGTLSPIVDQPDKAFMKEGMRPVLAQAASVFTTAIVTGRSKDKVYNFVGLDDVFYAGSHGLEIQGPLDRPVKCQM 131
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7S2D2V7_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2V7_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.270e-32 Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIV EPD+AF+ + MR VL +VAS+FTTAIVTGRS+EKVY+FV LDD++YAGSHG +I GPL+ P+ CQV
Sbjct: 110 VVFLDYDGTLSPIVKEPDRAFMKDTMRPVLQKVASMFTTAIVTGRSREKVYQFVQLDDVYYAGSHGFDISGPLKHPISCQV 190
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A662WPT2_9STRA (Trehalose 6-phosphate phosphatase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPT2_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.550e-28 Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIVD PD+AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G +P+ CQV
Sbjct: 24 VVFLDYDGTLSPIVDVPDRAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKSRPINCQV 104
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A2P4Y0S3_9STRA (Trehalose 6-phosphate phosphatase n=18 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y0S3_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.760e-28 Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G +P+ CQV
Sbjct: 15 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 95
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A3M6VKR0_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKR0_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.000e-27 Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIVD PD AF+ + MR+ L +++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G +P+ CQV
Sbjct: 24 VVFLDYDGTLSPIVDVPDHAFMTDAMRTALIKLSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 104
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7J0EEN3_9ERIC (Trehalose 6-phosphate phosphatase n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0EEN3_9ERIC) HSP 1 Score: 108 bits (269), Expect = 5.440e-27 Identity = 47/74 (63.51%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGP 222
++VVF DYDGTLSPIVD+PD+AF+ + MRS + E+A F TAI++GRS++KVY+FV LD++FYAGSHG++I+GP
Sbjct: 9 RIVVFLDYDGTLSPIVDDPDRAFMSDPMRSAVREIARQFPTAIISGRSRDKVYEFVKLDEVFYAGSHGMDIRGP 82
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A7S2WT46_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT46_9STRA) HSP 1 Score: 110 bits (274), Expect = 6.080e-27 Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPL-EKPVKCQV 249
VVF DYDGTLSPIV EPD A + +GMRSVL V++ +TTAI+TGRS+EKVY+FV LDD++YAGSHG +I GP + + CQV
Sbjct: 126 VVFLDYDGTLSPIVKEPDNAHMKDGMRSVLRRVSAAYTTAIITGRSREKVYQFVQLDDVYYAGSHGFDISGPDGDGSITCQV 207
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: UPI0005401C2A (probable trehalose-phosphate phosphatase H isoform X3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0005401C2A) HSP 1 Score: 107 bits (266), Expect = 6.340e-27 Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 1 KVVVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLE 228
K+VVF DYDGTLSPIV++PD AF+ + MR+V+ EV F T+I++GRS+EKVY+FVGLD+I+YAGSHG++I PL+
Sbjct: 57 KIVVFLDYDGTLSPIVNDPDVAFMTDKMRAVVHEVGCCFPTSIISGRSREKVYEFVGLDNIYYAGSHGMDIMAPLQ 132
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: A0A3F2RS21_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RS21_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.130e-26 Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G +P+ CQV
Sbjct: 24 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 104
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Match: H3GW55_PHYRM (Trehalose 6-phosphate phosphatase n=2 Tax=Phytophthora TaxID=4783 RepID=H3GW55_PHYRM) HSP 1 Score: 110 bits (276), Expect = 1.410e-26 Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 7 VVFSDYDGTLSPIVDEPDKAFILEGMRSVLAEVASLFTTAIVTGRSKEKVYKFVGLDDIFYAGSHGLEIQGPLEKPVKCQV 249
VVF DYDGTLSPIVD PD AF+ + MR+ L+E++S F TAIVTGRS EKVY FV LD++ YAGSHG +I+G +P+ CQV
Sbjct: 81 VVFLDYDGTLSPIVDVPDHAFMTDAMRAALSELSSKFVTAIVTGRSTEKVYNFVQLDNLVYAGSHGFDIKGTKTRPINCQV 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139848.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139848.2774.1 >prot_H-elongata_contig139848.2774.1 ID=prot_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp MSPIRLSSWRVCDLCLQRWPPFSRRRSSQAEARRKCTSLLDWMTFSMPGVback to top mRNA from alignment at H-elongata_contig139848:50..504- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139848.2774.1 ID=mRNA_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig139848:50..504- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139848:50..504- >mRNA_H-elongata_contig139848.2774.1 ID=mRNA_H-elongata_contig139848.2774.1|Name=mRNA_H-elongata_contig139848.2774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig139848:50..504- (Himanthalia elongata Himel1 dioecious)back to top |