mRNA_H-elongata_contig139839.2772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139839.2772.1
Unique NamemRNA_H-elongata_contig139839.2772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.420e-26
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 TGKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWLSEK+RRSLSKDVEYRRRIELLQDFDFPTASQ+V  S D QYVIV GTYPPQ+K
Sbjct:   19 SGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIK 80
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BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.210e-23
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 TGKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL++KQ+R+LSKD  YRRRIELLQDF+FPTASQ ++ S DGQ+VIVTGTYPPQVK
Sbjct:   36 SGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVK 97
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BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A2R5GXA8_9STRA (Nucleolar protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXA8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.140e-20
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 GKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            GKTLPQW+S+K R+SL+KD EYRRRIEL+QDF FP  S RV+ S DG+Y++ TG+YPPQVK
Sbjct:   17 GKTLPQWISDKNRKSLAKDEEYRRRIELVQDFYFPATSGRVKVSPDGEYIVATGSYPPQVK 77
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A2D4BFA0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFA0_PYTIN)

HSP 1 Score: 93.2 bits (230), Expect = 1.590e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 TGKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL+EK +++LSKD +YRRR+ELLQDF FP+ SQRV+ S DG Y+I TG YPP VK
Sbjct: 2413 SGKTLPQWLAEKTKKALSKDEDYRRRVELLQDFHFPSGSQRVKMSPDGNYIIATGMYPPSVK 2474
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A485KJT6_9STRA (Aste57867_8214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJT6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.420e-20
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 GKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            GKTLPQWL++K R++LS+D +YRRR+ELLQDF FP +SQRV  S DG YVI TGTYPP +K
Sbjct:   21 GKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIATGTYPPSLK 81
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 5.430e-20
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 TGKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL+EK ++SLS+D +YRRR+ELLQDF FP+ SQRV+ S DG Y++ TG YPP VK
Sbjct:   19 SGKTLPQWLAEKTKKSLSRDEDYRRRVELLQDFHFPSGSQRVKMSLDGNYIVATGMYPPIVK 80
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.430e-20
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 TGKTLPQWLSEK--QRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL+EK   R++L+KD +YRRR+ELLQDF FP ASQRVR SADG +V+ TG YPP VK
Sbjct:   19 SGKTLPQWLNEKGGSRKALAKDEDYRRRVELLQDFHFPAASQRVRMSADGNFVVATGVYPPSVK 82
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: G4YXE2_PHYSP (NUC153 domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YXE2_PHYSP)

HSP 1 Score: 91.7 bits (226), Expect = 5.430e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 TGKTLPQWLSEK--QRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL+EK   R++L+KD +YRRR+ELLQDF FP  SQRVR SADG YV+ TG YPP VK
Sbjct:   19 SGKTLPQWLAEKGGSRKALAKDEDYRRRVELLQDFHFPAGSQRVRMSADGNYVVATGVYPPSVK 82
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 GKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            GKTLPQWL++K R++LS+D +YRRR+ELLQDF FP +SQRV  S DG YVI +GTYPP +K
Sbjct:   20 GKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIK 80
[Close]
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.580e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 TGKTLPQWLSEK--QRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQYVIVTGTYPPQVK 186
            +GKTLPQWL+EK   R++L+KD +YRRR+ELLQDF FP  SQRVR S+DG Y++ TG YPP VK
Sbjct:   19 SGKTLPQWLAEKGGSRKALAKDEDYRRRVELLQDFHFPAGSQRVRMSSDGSYIVATGMYPPSVK 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139839.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI4.420e-2685.48NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA1.210e-2377.42WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2R5GXA8_9STRA1.140e-2068.85Nucleolar protein 10 n=1 Tax=Hondaea fermentalgian... [more]
A0A2D4BFA0_PYTIN1.590e-2067.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485KJT6_9STRA5.420e-2068.85Aste57867_8214 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1FME9_PYTOL5.430e-2066.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VIN9_9STRA5.430e-2068.75NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
G4YXE2_PHYSP5.430e-2068.75NUC153 domain-containing protein n=21 Tax=Phytopht... [more]
A0A024TJ26_9STRA1.010e-1967.21NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A662WTJ8_9STRA2.580e-1965.63NUC153 domain-containing protein n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139839contigH-elongata_contig139839:847..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.1821382-CDS-H-elongata_contig139839:846..10561622929831.1821382-CDS-H-elongata_contig139839:846..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139839 847..1056 +
1691679175.3127604-CDS-H-elongata_contig139839:846..10561691679175.3127604-CDS-H-elongata_contig139839:846..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139839 847..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139839.2772.1prot_H-elongata_contig139839.2772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139839 847..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139839.2772.1

>prot_H-elongata_contig139839.2772.1 ID=prot_H-elongata_contig139839.2772.1|Name=mRNA_H-elongata_contig139839.2772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
TGKTLPQWLSEKQRRSLSKDVEYRRRIELLQDFDFPTASQRVRASADGQY
VIVTGTYPPQVKGEPLCCV*
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mRNA from alignment at H-elongata_contig139839:847..1056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139839.2772.1 ID=mRNA_H-elongata_contig139839.2772.1|Name=mRNA_H-elongata_contig139839.2772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig139839:847..1056+ (Himanthalia elongata Himel1 dioecious)
ACAGGCAAGACCCTACCCCAATGGCTCTCCGAGAAACAACGACGCTCGCT
GTCGAAGGACGTGGAGTACCGCAGGAGGATCGAGCTGCTACAGGACTTCG
ACTTCCCGACGGCGTCGCAGAGGGTGCGCGCTTCGGCGGACGGCCAGTAC
GTCATCGTCACCGGTACCTACCCCCCTCAGGTCAAGGGTGAGCCATTGTG
TTGTGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139839:847..1056+

>mRNA_H-elongata_contig139839.2772.1 ID=mRNA_H-elongata_contig139839.2772.1|Name=mRNA_H-elongata_contig139839.2772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig139839:847..1056+ (Himanthalia elongata Himel1 dioecious)
ACAGGCAAGACCCTACCCCAATGGCTCTCCGAGAAACAACGACGCTCGCT
GTCGAAGGACGTGGAGTACCGCAGGAGGATCGAGCTGCTACAGGACTTCG
ACTTCCCGACGGCGTCGCAGAGGGTGCGCGCTTCGGCGGACGGCCAGTAC
GTCATCGTCACCGGTACCTACCCCCCTCAGGTCAAGGGTGAGCCATTGTG
TTGTGTTTGAACAGGCAAGACCCTACCCCAATGGCTCTCCGAGAAACAAC
GACGCTCGCTGTCGAAGGACGTGGAGTACCGCAGGAGGATCGAGCTGCTA
CAGGACTTCGACTTCCCGACGGCGTCGCAGAGGGTGCGCGCTTCGGCGGA
CGGCCAGTACGTCATCGTCACCGGTACCTACCCCCCTCAGGTCAAGGGTG
AGCCATTGTGTTGTGTTTGA
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