mRNA_H-elongata_contig139833.2771.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139833.2771.1
Unique NamemRNA_H-elongata_contig139833.2771.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-17
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 GLRPGVVLGGDLNSPPNGPVRYLLGELVGPDSDLWRNVETFQW 129
            GLRP V+LGGDLNSPP+GPVRYL+G+L+GPDSDLW N+ TF+W
Sbjct:  490 GLRPAVILGGDLNSPPDGPVRYLMGDLIGPDSDLWENMGTFKW 532
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BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.810e-17
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 GLRPGVVLGGDLNSPPNGPVRYLLGELVGPDSDLWRNVETFQW 129
            GLRP VVLGGDLNS P GPVRYL+G+L+GPDSDLW NV TF+W
Sbjct:  660 GLRPAVVLGGDLNSTPGGPVRYLMGDLIGPDSDLWENVGTFKW 702
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BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Match: W7T5B9_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5B9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.820e-6
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 GLRPGVVLGGDLNSPPN-GPVRYLLGELVGPDSDLWRNVETFQW 129
            G+RP +VL GDLNS P    +RYL GE +GP+ ++W ++  F W
Sbjct:   59 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 102
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BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Match: W7TNA6_9STRA (Endonuclease/exonuclease/phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.990e-6
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 GLRPGVVLGGDLNSPPN-GPVRYLLGELVGPDSDLWRNVETFQW 129
            G+RP +VL GDLNS P    +RYL GE +GP+ ++W ++  F W
Sbjct:  100 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 143
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BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Match: K8YU24_NANGC (2-phosphodiesterase 12-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YU24_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 3.030e-6
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 GLRPGVVLGGDLNSPPN-GPVRYLLGELVGPDSDLWRNVETFQW 129
            G+RP +VL GDLNS P    +RYL GE +GP+ ++W ++  F W
Sbjct:  127 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139833.2771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYP3_ECTSI1.220e-1776.74Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JRV9_9PHAE5.810e-1779.07Endo/exonuclease/phosphatase domain-containing pro... [more]
W7T5B9_9STRA2.820e-647.73Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
W7TNA6_9STRA2.990e-647.73Endonuclease/exonuclease/phosphatase n=2 Tax=Monod... [more]
K8YU24_NANGC3.030e-647.732-phosphodiesterase 12-like protein n=1 Tax=Nannoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139833contigH-elongata_contig139833:1287..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue8.8e-15
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.128984-CDS-H-elongata_contig139833:1286..14181622929831.128984-CDS-H-elongata_contig139833:1286..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139833 1287..1418 +
1691679175.2984328-CDS-H-elongata_contig139833:1286..14181691679175.2984328-CDS-H-elongata_contig139833:1286..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139833 1287..1418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139833.2771.1prot_H-elongata_contig139833.2771.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139833 1287..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139833.2771.1

>prot_H-elongata_contig139833.2771.1 ID=prot_H-elongata_contig139833.2771.1|Name=mRNA_H-elongata_contig139833.2771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
GLRPGVVLGGDLNSPPNGPVRYLLGELVGPDSDLWRNVETFQW*
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mRNA from alignment at H-elongata_contig139833:1287..1418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139833.2771.1 ID=mRNA_H-elongata_contig139833.2771.1|Name=mRNA_H-elongata_contig139833.2771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig139833:1287..1418+ (Himanthalia elongata Himel1 dioecious)
GGTCTACGGCCCGGTGTGGTCCTAGGTGGTGACCTCAACAGCCCCCCTAA
TGGCCCCGTCCGATATCTCTTGGGAGAGCTCGTCGGCCCGGACAGCGACT
TGTGGCGTAATGTCGAGACATTTCAGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139833:1287..1418+

>mRNA_H-elongata_contig139833.2771.1 ID=mRNA_H-elongata_contig139833.2771.1|Name=mRNA_H-elongata_contig139833.2771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig139833:1287..1418+ (Himanthalia elongata Himel1 dioecious)
GGTCTACGGCCCGGTGTGGTCCTAGGTGGTGACCTCAACAGCCCCCCTAA
TGGCCCCGTCCGATATCTCTTGGGAGAGCTCGTCGGCCCGGACAGCGACT
TGTGGCGTAATGTCGAGACATTTCAGTGGTGAGGTCTACGGCCCGGTGTG
GTCCTAGGTGGTGACCTCAACAGCCCCCCTAATGGCCCCGTCCGATATCT
CTTGGGAGAGCTCGTCGGCCCGGACAGCGACTTGTGGCGTAATGTCGAGA
CATTTCAGTGGTGA
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