mRNA_H-elongata_contig13973.2764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13973.2764.1
Unique NamemRNA_H-elongata_contig13973.2764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: D7G2P2_ECTSI (COX15 homolog, cytochrome c oxidase assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P2_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 5.120e-122
Identity = 178/207 (85.99%), Postives = 189/207 (91.30%), Query Frame = 1
Query:    4 AEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAE--ARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            AEWE EF+RYKAFPEWQQRR+MTLDEFK I+FWEYAHRMLGRALGVIYGVPLLYFGLRGRIP HIRGRVA LFALGGAQGLVGWWMVKSGLEDRS DLA GK++RVSPYRLAAHLATAF TFSLLVHTGFQAL GP++ S SA   AR LLDAG++RQ S LRV+A GVCG AFVTAVSGAFVAGNDAGRCYNCFPKMTEE+WLPEE
Sbjct:   32 AEWEAEFDRYKAFPEWQQRRSMTLDEFKHIFFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPAHIRGRVAGLFALGGAQGLVGWWMVKSGLEDRSADLAVGKEIRVSPYRLAAHLATAFATFSLLVHTGFQALDGPRTASPSAADAARRLLDAGVMRQGSNLRVMAMGVCGAAFVTAVSGAFVAGNDAGRCYNCFPKMTEEDWLPEE 238          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A6H5KUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA4_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 3.090e-120
Identity = 177/207 (85.51%), Postives = 189/207 (91.30%), Query Frame = 1
Query:    4 AEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAE--ARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            AEWE EF+RYKAFPEWQQRR+MTLDEFK I+FWEYAHRMLGRALGV+YGVPLLYFGLRGRIP HIRGRVA LFALGGAQGLVGWWMVKSGLEDRS DLA GK++RVSPYRLAAHLATAF TFSLLVHTGFQAL GP++ S SA   AR LLDAG++RQ S LRV+A GVCG AFVTAVSGAFVAGNDAGRCYNCFPKMTEE+WLPEE
Sbjct:  149 AEWEAEFDRYKAFPEWQQRRSMTLDEFKHIFFWEYAHRMLGRALGVVYGVPLLYFGLRGRIPAHIRGRVAGLFALGGAQGLVGWWMVKSGLEDRSADLAVGKEIRVSPYRLAAHLATAFTTFSLLVHTGFQALDGPRAASPSATDAARRLLDAGVMRQGSNLRVMAMGVCGAAFVTAVSGAFVAGNDAGRCYNCFPKMTEEDWLPEE 355          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A835Z6N7_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6N7_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.490e-79
Identity = 134/210 (63.81%), Postives = 149/210 (70.95%), Query Frame = 1
Query:    4 AEWETEFERYKAFPEWQQRRT--MTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGK--QVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            AEWE EF RYK FPE+QQRR   MT+D+FK I++WEY HRMLGRALGV+YG PLLYF  RG +P HIR R AAL  LGG QGLVGWWMVKSGL E+ +  L  G+  QVRVSPYRLA HLA AF TF LLVHTG  AL GP + +   EA       LL  A  LR    G   +AFVTA+SGAFVAGNDAG  YN FPKMT + WLPEE
Sbjct:   32 AEWEAEFNRYKQFPEYQQRRQQGMTVDDFKSIFWWEYGHRMLGRALGVVYGAPLLYFAARGALPPHIRARAAALLVLGGTQGLVGWWMVKSGLQEETAAKLGEGEGAQVRVSPYRLATHLAMAFTTFGLLVHTGLDALRGPGAAN---EALAAFGKQLLAPAGVLRRATIGTAALAFVTAMSGAFVAGNDAGHAYNTFPKMTYDRWLPEE 238          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A835YUA1_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA1_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.030e-75
Identity = 131/218 (60.09%), Postives = 151/218 (69.27%), Query Frame = 1
Query:    4 AEWETEFERYKAFPEWQQRRT--MTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLED----RSEDLATGK-------QVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            AEWE EF RYK FPE+QQR+   MTLD+FK I++WEY HRMLGRALGV+YG PLLYF  RG +PRHIRGR AAL ALG AQGLVGWWMVKSGL +    R      G+       Q+RVSPYRLAAHL  AF TF+LLVHTG  AL GP +   + + R  +D   L  A  LR  A     ++FVTA+SGAFVAGNDAGR YN FP+M  + WLP E
Sbjct:   32 AEWEAEFARYKQFPEYQQRQHQGMTLDDFKYIFWWEYGHRMLGRALGVVYGAPLLYFAARGALPRHIRGRAAALLALGAAQGLVGWWMVKSGLHEGTLARLRGAGGGEGEGGERVQIRVSPYRLAAHLGMAFTTFALLVHTGLDALHGPGA---ARQVRTCVDVLSLPLARVLRGAALTTAALSFVTALSGAFVAGNDAGRAYNTFPRMLPDRWLPVE 246          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: W7U5C0_9STRA (Cytochrome c oxidase assembly protein cox15-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5C0_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.620e-66
Identity = 117/216 (54.17%), Postives = 144/216 (66.67%), Query Frame = 1
Query:    7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSG---------SLSAEAR---PLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            EW+ EF RYK FPE+QQR++MTLDEFK I++WE+ HRM+GR +G+ YG+P  YF +RGRIPR +  R+A LFALGG QGL+GWWMVKSGLE    D    K++RVSPYRL AHL  AF TFSLL+ TG      P+            L+A AR   P     LL +  R+R +     G+  VT +SGAFVAGNDAGR YN FPKM E+ W+P E
Sbjct:  109 EWQAEFARYKQFPEYQQRQSMTLDEFKFIFYWEWGHRMMGRFIGLAYGLPFAYFAVRGRIPRSLYPRLATLFALGGGQGLIGWWMVKSGLE---MDPQQRKEIRVSPYRLTAHLGMAFTTFSLLIWTGMDLFHPPEHAVRAATALKTQLAAAARTGGPQASQELLTRVLRVRHLGIASAGLLGVTILSGAFVAGNDAGRAYNTFPKMGEDFWIPPE 321          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A7S2WMJ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMJ4_9STRA)

HSP 1 Score: 216 bits (551), Expect = 4.670e-65
Identity = 111/203 (54.68%), Postives = 139/203 (68.47%), Query Frame = 1
Query:    7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPE 615
            EW  EFERYK FPEWQQR++MTLDEFK I++WEY HRMLGR +GV +GVPL YF  RGR+P HI+ +V ALF LG  QG +GWWMV+SGL+    D    K++RVSPYRLA HL  AF T++LL+ T    L   +      +A P     LL Q SR+R  +     + F TA+SGAFVAGNDAGR +N FPKM ++ W+P+
Sbjct:  120 EWLEEFERYKTFPEWQQRQSMTLDEFKYIFWWEYGHRMLGRCVGVAFGVPLAYFWARGRLPPHIKSKVLALFGLGATQGAIGWWMVQSGLD---MDPKQRKEIRVSPYRLATHLGMAFTTYTLLLWTAMDVLYPRERAMRHLDAIPKQ---LLPQVSRVRGASVATAAIVFTTAMSGAFVAGNDAGRAFNTFPKM-DDQWVPD 315          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A1Z5KJP2_FISSO (Cytochrome c oxidase assembly protein subunit 15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJP2_FISSO)

HSP 1 Score: 212 bits (539), Expect = 6.270e-64
Identity = 112/207 (54.11%), Postives = 141/207 (68.12%), Query Frame = 1
Query:    1 KAEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            K EWE EF RYK FPEWQQR++MT++EF+ IY+WEY HRMLGR +GV++  P LYF LRG+IP   +GR+A L  +GG QGLVGWWMVKSGL +DR  D     Q+RV P RLA HL+ A  T+  L+ TGF  LS P + +L +          LR +S+L + A  + G+  VT VSGA VAGNDAGR YN FPKM + +W+P E
Sbjct:   68 KDEWEAEFARYKQFPEWQQRKSMTMEEFQYIYYWEYGHRMLGRCVGVLFCGPWLYFSLRGKIPAGYQGRMALLATMGGTQGLVGWWMVKSGLGDDRRGDR---NQIRVKPIRLATHLSVAVATYGALLWTGFSVLSLPYNNTLQSLDLASQLPQALRHSSKLHIAALAMTGLTAVTIVSGALVAGNDAGRAYNTFPKM-DGHWIPPE 270          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A7S2EG07_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EG07_TRICV)

HSP 1 Score: 211 bits (536), Expect = 1.070e-63
Identity = 115/202 (56.93%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGP-----QSGSLSA-EARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKM 591
            EWE EF+RYK FPEWQQR++M +++FK IYFWE+ HRMLGRA+GV +  P  YF LRGRIP     R+  LF +GG QGLVGWWMVKSGL E+R  D    K++RVSPYRLAAHL  AF T+S LV TG      P     + G++   EA   L +  +R A +LR  A GV  VAF+TA+SGAFVAGNDAG  YN FP M
Sbjct:   29 EWEAEFDRYKTFPEWQQRKSMDVEDFKYIYFWEWGHRMLGRAVGVAFAAPWAYFALRGRIPAGYGPRMGLLFTMGGTQGLVGWWMVKSGLGENRRGDR---KEIRVSPYRLAAHLGMAFATYSTLVWTGMGISHVPNDTPGKDGTVRLREAARSLSSAAMRHARKLRTGAVGVTSVAFLTAISGAFVAGNDAGNAYNTFPLM 227          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: K3WH56_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH56_GLOUD)

HSP 1 Score: 210 bits (535), Expect = 8.920e-63
Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 1
Query:    7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRS-EDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            EWE EFE+YK FPE+QQR+ MTL+EFK IY WEY HRMLGR +G+ YG+PL YF LR R+PR + GR A L  LG  QG +GWWMV+SGLE+   E L    +VRVSPYRLA HL+ AF T  +L+ TGF  LS P   +L+ E   ++   +L++ ++LR   A +  +   T +SGAFVAG DAG  +N FPKM ++ W+P++
Sbjct:  134 EWEEEFEKYKLFPEYQQRKGMTLNEFKGIYAWEYGHRMLGRTIGLAYGLPLAYFALRKRLPRELYGRFAFLLGLGATQGAIGWWMVRSGLEEHGKEQLEKQNEVRVSPYRLATHLSFAFTTLGVLIWTGFSILSPPSRAALTRE---MISPDVLKETTKLRKYIARLSTLLGYTILSGAFVAGTDAGLAFNTFPKMGDQ-WIPDD 334          
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A3R7JYT8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYT8_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.160e-62
Identity = 106/205 (51.71%), Postives = 143/205 (69.76%), Query Frame = 1
Query:    7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRS-EDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
            EW+ EFE YK FPE+QQR+ MT+++FK I++WEY HRMLGR +G++Y +PL+YFGLR ++P  +  R A LF LG AQG VGWWMV+SGLE+   E L    +VRVSPYRLA HLA AF T  +L+ TGF  +S P   S +A  R ++   +L+Q +R+R +   V  V   T +SGAFVAG DAG  +N FPKM ++ W+P++
Sbjct:  135 EWQAEFETYKQFPEYQQRKNMTVEDFKGIFWWEYGHRMLGRTVGMVYTLPLIYFGLRKKLPVELYTRFAVLFGLGAAQGGVGWWMVRSGLEEHGREQLQKKNEVRVSPYRLATHLAFAFTTLGVLIWTGFGLISPP---SRAAMTREMISPDVLKQTTRIRKILGHVSTVLGYTIISGAFVAGIDAGMAFNTFPKM-DDQWIPDD 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P2_ECTSI5.120e-12285.99COX15 homolog, cytochrome c oxidase assembly prote... [more]
A0A6H5KUA4_9PHAE3.090e-12085.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6N7_9STRA5.490e-7963.81COX15-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YUA1_9STRA5.030e-7560.09COX15-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
W7U5C0_9STRA1.620e-6654.17Cytochrome c oxidase assembly protein cox15-like p... [more]
A0A7S2WMJ4_9STRA4.670e-6554.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KJP2_FISSO6.270e-6454.11Cytochrome c oxidase assembly protein subunit 15 n... [more]
A0A7S2EG07_TRICV1.070e-6356.93Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
K3WH56_GLOUD8.920e-6352.20Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7JYT8_9STRA4.160e-6251.71Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13973contigH-elongata_contig13973:1658..3447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.5
Seed ortholog evalue1.4e-97
Seed eggNOG ortholog2880.D7G2P2
Preferred nameCOX15
KEGG rclassRC00769
KEGG koko:K02259
KEGG TC3.D.4.4
KEGG ReactionR07412
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714
KEGG ModuleM00154
GOsGO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009058,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016226,GO:0016491,GO:0016651,GO:0016653,GO:0016675,GO:0016676,GO:0018130,GO:0019438,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0031090,GO:0031163,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033013,GO:0033014,GO:0034220,GO:0034641,GO:0042168,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0045333,GO:0046148,GO:0046160,GO:0046483,GO:0048037,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051536,GO:0051537,GO:0051540,GO:0055085,GO:0055114,GO:0071704,GO:0071840,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.Cytochrome C oxidase assembly protein
EggNOG OGsCOG1612@1,KOG2725@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionCOX15 homolog, cytochrome c oxidase assembly protein
Ec32 orthologEc-11_002950.1
Exons4
Model size626
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13973.2764.1prot_H-elongata_contig13973.2764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13973 1660..3447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.372094-CDS-H-elongata_contig13973:1659..18871622929830.372094-CDS-H-elongata_contig13973:1659..1887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 1660..1887 -
1691679175.112211-CDS-H-elongata_contig13973:1659..18871691679175.112211-CDS-H-elongata_contig13973:1659..1887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 1660..1887 -
1622929830.3823845-CDS-H-elongata_contig13973:2537..26541622929830.3823845-CDS-H-elongata_contig13973:2537..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 2538..2654 -
1691679175.1269138-CDS-H-elongata_contig13973:2537..26541691679175.1269138-CDS-H-elongata_contig13973:2537..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 2538..2654 -
1622929830.3918724-CDS-H-elongata_contig13973:2923..30971622929830.3918724-CDS-H-elongata_contig13973:2923..3097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 2924..3097 -
1691679175.1346052-CDS-H-elongata_contig13973:2923..30971691679175.1346052-CDS-H-elongata_contig13973:2923..3097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 2924..3097 -
1622929830.4014342-CDS-H-elongata_contig13973:3342..34471622929830.4014342-CDS-H-elongata_contig13973:3342..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 3343..3447 -
1691679175.1424372-CDS-H-elongata_contig13973:3342..34471691679175.1424372-CDS-H-elongata_contig13973:3342..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 3343..3447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13973.2764.1

>prot_H-elongata_contig13973.2764.1 ID=prot_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
KAEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYG
VPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLA
TGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLL
DAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEE
NWLPEEAR
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mRNA from alignment at H-elongata_contig13973:1658..3447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13973.2764.1 ID=mRNA_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig13973:1658..3447- (Himanthalia elongata Himel1 dioecious)
AAGGCCGAGTGGGAGACGGAGTTTGAGCGGTACAAGGCGTTCCCGGAGTG GCAGCAGCGTCGCACCATGACCCTTGACGAGTTCAAGGACATCTACTTCT GGGAGGTAAGAGCTCACGTGGTCGCGATACGGTACTAGACCAGTGCTTCG CGATTACGTATCAACTGCTGGAAATGCTCGCGATTACGTATCAATGTTTG CCATACTGATGATGGGGAAACCCCACGAAACTCTCCGGGGAGCTCGAAAA TCGTTCAATCAAATTTGAGTATTTTCCCTCCCGGAAGAAGCGTTTGATGT TCCTCGTGCCGCAATGGGATCCCTCTTTTTATTCGCCTGTCCCTGCGCAG TACGCCCACCGAATGCTGGGGCGAGCCCTCGGCGTAATCTACGGGGTACC TCTCCTGTACTTCGGTTTGCGCGGCCGCATCCCTCGCCATATCCGCGGGC GAGTCGCGGCGCTGTTCGCCCTTGGAGGCGCCCAGGGTTTGGTCGGGTGG TGGATGGTGAAGAGCGGCCTGGAGGTATGTGTCTATTCCAACGCCGCCGG TATACTCGTAGCCGGCTGGATTTCGGCGTTGATTGGAGTAATGAGGGCTA CAAACAGAGGTTGGTGTGACTCACTAATATATTTACGAATACTGCTGCCC GCCGCAGGTGCGCTCCCTCGTGGGAAGAGCACGTGCTTCTTTATCCCAAA TTAAATCCATGTCGCGGCGGTAAGGCTGACCATCATTAGGTGGTTGATGT AGTACCGACCACCTGTACTAAAACACCTCCCCAATCGTTGCAGGACCGCT CCGAAGACCTTGCCACGGGGAAGCAGGTTCGAGTAAGCCCCTACCGACTG GCGGCACACCTAGCGACAGCGTTCGTGACGTTTTCCCTGCTCGTGCACAC GGGTTTTCAGGTGCTGTTCTCTGCGTACTTTCGCTGCGGCGCACGACTGT CCCGAAGTTAGGGTTTCTAAAGACGGTACCGCGGCTTTCTTGTCGATATT AGAAAAAGAGAGAGAAAAAATAGAGCTCTTGGGTACCTTGTCGGTGGAGT ATTGGGGATGTTTTCGCGTGAGACGTGACCAATGAAACGAATATCACCCA CATTTTTTTTTTCTAGACGCCTCTGTCTCCTTGTGATCTTTTACTTCGAT AGAGGAGATATACGGAAGATAGCCTTCCCCCCGTCCCCAACAATCACAAA CATGTTGTTTTTGTTTTCTTCTCTTGAGATACATGAGTACATGATTCCCG CCGTGGGTACCGTAGGCGACAGGATGTACACCCCCCCCCCCGTAGAAAGG ATCCGGTGTTAGGGCACGTTTCTTGAAAGGGGTAAACTAAACAATTATTT TCGAAATTGCCTCATATCGTGAGGCGGTGGTTCCAGTTGTCGAGAAAGGG GATGTGAAGGAGGGGAGGTGGGTTCCTTCAACGGTGTGTCTAACATAATA TATACGTACTAAATAGTAAATACCCTATCCCCTACGATACAGCAGTATTG CAGCGATCCCCCTACGCGCTTCTTCCCTCGTCCGCCTCGACACATAACCT CGTTGCACAGGCCCTTAGCGGACCACAGTCGGGGTCTCTATCCGCGGAGG CGCGCCCGCTGCTCGACGCTGGCCTGCTCCGGCAGGCCTCGCGTCTCCGA GTTGTAGCAGCTGGCGTCTGCGGCGTCGCTTTCGTGACAGCGGTGTCGGG GGCTTTCGTTGCGGGCAACGACGCCGGGCGGTGCTACAACTGCTTCCCCA AGATGACCGAGGAGAATTGGCTACCAGAAGAGGCAAGATC
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Coding sequence (CDS) from alignment at H-elongata_contig13973:1658..3447-

>mRNA_H-elongata_contig13973.2764.1 ID=mRNA_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig13973:1658..3447- (Himanthalia elongata Himel1 dioecious)
AAGGCCGAGTGGGAGACGGAGTTTGAGCGGTACAAGGCGTTCCCGGAGTG
GCAGCAGCGTCGCACCATGACCCTTGACGAGTTCAAGGACATCTACTTCT
GGGAGAAGGCCGAGTGGGAGACGGAGTTTGAGCGGTACAAGGCGTTCCCG
GAGTGGCAGCAGCGTCGCACCATGACCCTTGACGAGTTCAAGGACATCTA
CTTCTGGGAGTACGCCCACCGAATGCTGGGGCGAGCCCTCGGCGTAATCT
ACGGGGTACCTCTCCTGTACTTCGGTTTGCGCGGCCGCATCCCTCGCCAT
ATCCGCGGGCGAGTCGCGGCGCTGTTCGCCCTTGGAGGCGCCCAGGGTTT
GGTCGGGTGGTGGATGGTGAAGAGCGGCCTGGAGTACGCCCACCGAATGC
TGGGGCGAGCCCTCGGCGTAATCTACGGGGTACCTCTCCTGTACTTCGGT
TTGCGCGGCCGCATCCCTCGCCATATCCGCGGGCGAGTCGCGGCGCTGTT
CGCCCTTGGAGGCGCCCAGGGTTTGGTCGGGTGGTGGATGGTGAAGAGCG
GCCTGGAGGACCGCTCCGAAGACCTTGCCACGGGGAAGCAGGTTCGAGTA
AGCCCCTACCGACTGGCGGCACACCTAGCGACAGCGTTCGTGACGTTTTC
CCTGCTCGTGCACACGGGTTTTCAGGACCGCTCCGAAGACCTTGCCACGG
GGAAGCAGGTTCGAGTAAGCCCCTACCGACTGGCGGCACACCTAGCGACA
GCGTTCGTGACGTTTTCCCTGCTCGTGCACACGGGTTTTCAGGCCCTTAG
CGGACCACAGTCGGGGTCTCTATCCGCGGAGGCGCGCCCGCTGCTCGACG
CTGGCCTGCTCCGGCAGGCCTCGCGTCTCCGAGTTGTAGCAGCTGGCGTC
TGCGGCGTCGCTTTCGTGACAGCGGTGTCGGGGGCTTTCGTTGCGGGCAA
CGACGCCGGGCGGTGCTACAACTGCTTCCCCAAGATGACCGAGGAGAATT
GGCTACCAGAAGAGGCAAGAGCCCTTAGCGGACCACAGTCGGGGTCTCTA
TCCGCGGAGGCGCGCCCGCTGCTCGACGCTGGCCTGCTCCGGCAGGCCTC
GCGTCTCCGAGTTGTAGCAGCTGGCGTCTGCGGCGTCGCTTTCGTGACAG
CGGTGTCGGGGGCTTTCGTTGCGGGCAACGACGCCGGGCGGTGCTACAAC
TGCTTCCCCAAGATGACCGAGGAGAATTGGCTACCAGAAGAGGCAAGA
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