mRNA_H-elongata_contig13973.2764.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: D7G2P2_ECTSI (COX15 homolog, cytochrome c oxidase assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P2_ECTSI) HSP 1 Score: 359 bits (921), Expect = 5.120e-122 Identity = 178/207 (85.99%), Postives = 189/207 (91.30%), Query Frame = 1
Query: 4 AEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAE--ARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
AEWE EF+RYKAFPEWQQRR+MTLDEFK I+FWEYAHRMLGRALGVIYGVPLLYFGLRGRIP HIRGRVA LFALGGAQGLVGWWMVKSGLEDRS DLA GK++RVSPYRLAAHLATAF TFSLLVHTGFQAL GP++ S SA AR LLDAG++RQ S LRV+A GVCG AFVTAVSGAFVAGNDAGRCYNCFPKMTEE+WLPEE
Sbjct: 32 AEWEAEFDRYKAFPEWQQRRSMTLDEFKHIFFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPAHIRGRVAGLFALGGAQGLVGWWMVKSGLEDRSADLAVGKEIRVSPYRLAAHLATAFATFSLLVHTGFQALDGPRTASPSAADAARRLLDAGVMRQGSNLRVMAMGVCGAAFVTAVSGAFVAGNDAGRCYNCFPKMTEEDWLPEE 238
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A6H5KUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA4_9PHAE) HSP 1 Score: 358 bits (920), Expect = 3.090e-120 Identity = 177/207 (85.51%), Postives = 189/207 (91.30%), Query Frame = 1
Query: 4 AEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAE--ARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
AEWE EF+RYKAFPEWQQRR+MTLDEFK I+FWEYAHRMLGRALGV+YGVPLLYFGLRGRIP HIRGRVA LFALGGAQGLVGWWMVKSGLEDRS DLA GK++RVSPYRLAAHLATAF TFSLLVHTGFQAL GP++ S SA AR LLDAG++RQ S LRV+A GVCG AFVTAVSGAFVAGNDAGRCYNCFPKMTEE+WLPEE
Sbjct: 149 AEWEAEFDRYKAFPEWQQRRSMTLDEFKHIFFWEYAHRMLGRALGVVYGVPLLYFGLRGRIPAHIRGRVAGLFALGGAQGLVGWWMVKSGLEDRSADLAVGKEIRVSPYRLAAHLATAFTTFSLLVHTGFQALDGPRAASPSATDAARRLLDAGVMRQGSNLRVMAMGVCGAAFVTAVSGAFVAGNDAGRCYNCFPKMTEEDWLPEE 355
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A835Z6N7_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6N7_9STRA) HSP 1 Score: 249 bits (636), Expect = 5.490e-79 Identity = 134/210 (63.81%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 4 AEWETEFERYKAFPEWQQRRT--MTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGK--QVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
AEWE EF RYK FPE+QQRR MT+D+FK I++WEY HRMLGRALGV+YG PLLYF RG +P HIR R AAL LGG QGLVGWWMVKSGL E+ + L G+ QVRVSPYRLA HLA AF TF LLVHTG AL GP + + EA LL A LR G +AFVTA+SGAFVAGNDAG YN FPKMT + WLPEE
Sbjct: 32 AEWEAEFNRYKQFPEYQQRRQQGMTVDDFKSIFWWEYGHRMLGRALGVVYGAPLLYFAARGALPPHIRARAAALLVLGGTQGLVGWWMVKSGLQEETAAKLGEGEGAQVRVSPYRLATHLAMAFTTFGLLVHTGLDALRGPGAAN---EALAAFGKQLLAPAGVLRRATIGTAALAFVTAMSGAFVAGNDAGHAYNTFPKMTYDRWLPEE 238
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A835YUA1_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA1_9STRA) HSP 1 Score: 239 bits (610), Expect = 5.030e-75 Identity = 131/218 (60.09%), Postives = 151/218 (69.27%), Query Frame = 1
Query: 4 AEWETEFERYKAFPEWQQRRT--MTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLED----RSEDLATGK-------QVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
AEWE EF RYK FPE+QQR+ MTLD+FK I++WEY HRMLGRALGV+YG PLLYF RG +PRHIRGR AAL ALG AQGLVGWWMVKSGL + R G+ Q+RVSPYRLAAHL AF TF+LLVHTG AL GP + + + R +D L A LR A ++FVTA+SGAFVAGNDAGR YN FP+M + WLP E
Sbjct: 32 AEWEAEFARYKQFPEYQQRQHQGMTLDDFKYIFWWEYGHRMLGRALGVVYGAPLLYFAARGALPRHIRGRAAALLALGAAQGLVGWWMVKSGLHEGTLARLRGAGGGEGEGGERVQIRVSPYRLAAHLGMAFTTFALLVHTGLDALHGPGA---ARQVRTCVDVLSLPLARVLRGAALTTAALSFVTALSGAFVAGNDAGRAYNTFPRMLPDRWLPVE 246
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: W7U5C0_9STRA (Cytochrome c oxidase assembly protein cox15-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5C0_9STRA) HSP 1 Score: 220 bits (561), Expect = 1.620e-66 Identity = 117/216 (54.17%), Postives = 144/216 (66.67%), Query Frame = 1
Query: 7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSG---------SLSAEAR---PLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
EW+ EF RYK FPE+QQR++MTLDEFK I++WE+ HRM+GR +G+ YG+P YF +RGRIPR + R+A LFALGG QGL+GWWMVKSGLE D K++RVSPYRL AHL AF TFSLL+ TG P+ L+A AR P LL + R+R + G+ VT +SGAFVAGNDAGR YN FPKM E+ W+P E
Sbjct: 109 EWQAEFARYKQFPEYQQRQSMTLDEFKFIFYWEWGHRMMGRFIGLAYGLPFAYFAVRGRIPRSLYPRLATLFALGGGQGLIGWWMVKSGLE---MDPQQRKEIRVSPYRLTAHLGMAFTTFSLLIWTGMDLFHPPEHAVRAATALKTQLAAAARTGGPQASQELLTRVLRVRHLGIASAGLLGVTILSGAFVAGNDAGRAYNTFPKMGEDFWIPPE 321
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A7S2WMJ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMJ4_9STRA) HSP 1 Score: 216 bits (551), Expect = 4.670e-65 Identity = 111/203 (54.68%), Postives = 139/203 (68.47%), Query Frame = 1
Query: 7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPE 615
EW EFERYK FPEWQQR++MTLDEFK I++WEY HRMLGR +GV +GVPL YF RGR+P HI+ +V ALF LG QG +GWWMV+SGL+ D K++RVSPYRLA HL AF T++LL+ T L + +A P LL Q SR+R + + F TA+SGAFVAGNDAGR +N FPKM ++ W+P+
Sbjct: 120 EWLEEFERYKTFPEWQQRQSMTLDEFKYIFWWEYGHRMLGRCVGVAFGVPLAYFWARGRLPPHIKSKVLALFGLGATQGAIGWWMVQSGLD---MDPKQRKEIRVSPYRLATHLGMAFTTYTLLLWTAMDVLYPRERAMRHLDAIPKQ---LLPQVSRVRGASVATAAIVFTTAMSGAFVAGNDAGRAFNTFPKM-DDQWVPD 315
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A1Z5KJP2_FISSO (Cytochrome c oxidase assembly protein subunit 15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJP2_FISSO) HSP 1 Score: 212 bits (539), Expect = 6.270e-64 Identity = 112/207 (54.11%), Postives = 141/207 (68.12%), Query Frame = 1
Query: 1 KAEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
K EWE EF RYK FPEWQQR++MT++EF+ IY+WEY HRMLGR +GV++ P LYF LRG+IP +GR+A L +GG QGLVGWWMVKSGL +DR D Q+RV P RLA HL+ A T+ L+ TGF LS P + +L + LR +S+L + A + G+ VT VSGA VAGNDAGR YN FPKM + +W+P E
Sbjct: 68 KDEWEAEFARYKQFPEWQQRKSMTMEEFQYIYYWEYGHRMLGRCVGVLFCGPWLYFSLRGKIPAGYQGRMALLATMGGTQGLVGWWMVKSGLGDDRRGDR---NQIRVKPIRLATHLSVAVATYGALLWTGFSVLSLPYNNTLQSLDLASQLPQALRHSSKLHIAALAMTGLTAVTIVSGALVAGNDAGRAYNTFPKM-DGHWIPPE 270
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A7S2EG07_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EG07_TRICV) HSP 1 Score: 211 bits (536), Expect = 1.070e-63 Identity = 115/202 (56.93%), Postives = 138/202 (68.32%), Query Frame = 1
Query: 7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGL-EDRSEDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGP-----QSGSLSA-EARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKM 591
EWE EF+RYK FPEWQQR++M +++FK IYFWE+ HRMLGRA+GV + P YF LRGRIP R+ LF +GG QGLVGWWMVKSGL E+R D K++RVSPYRLAAHL AF T+S LV TG P + G++ EA L + +R A +LR A GV VAF+TA+SGAFVAGNDAG YN FP M
Sbjct: 29 EWEAEFDRYKTFPEWQQRKSMDVEDFKYIYFWEWGHRMLGRAVGVAFAAPWAYFALRGRIPAGYGPRMGLLFTMGGTQGLVGWWMVKSGLGENRRGDR---KEIRVSPYRLAAHLGMAFATYSTLVWTGMGISHVPNDTPGKDGTVRLREAARSLSSAAMRHARKLRTGAVGVTSVAFLTAISGAFVAGNDAGNAYNTFPLM 227
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: K3WH56_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH56_GLOUD) HSP 1 Score: 210 bits (535), Expect = 8.920e-63 Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 1
Query: 7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRS-EDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
EWE EFE+YK FPE+QQR+ MTL+EFK IY WEY HRMLGR +G+ YG+PL YF LR R+PR + GR A L LG QG +GWWMV+SGLE+ E L +VRVSPYRLA HL+ AF T +L+ TGF LS P +L+ E ++ +L++ ++LR A + + T +SGAFVAG DAG +N FPKM ++ W+P++
Sbjct: 134 EWEEEFEKYKLFPEYQQRKGMTLNEFKGIYAWEYGHRMLGRTIGLAYGLPLAYFALRKRLPRELYGRFAFLLGLGATQGAIGWWMVRSGLEEHGKEQLEKQNEVRVSPYRLATHLSFAFTTLGVLIWTGFSILSPPSRAALTRE---MISPDVLKETTKLRKYIARLSTLLGYTILSGAFVAGTDAGLAFNTFPKMGDQ-WIPDD 334
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Match: A0A3R7JYT8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYT8_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.160e-62 Identity = 106/205 (51.71%), Postives = 143/205 (69.76%), Query Frame = 1
Query: 7 EWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGVPLLYFGLRGRIPRHIRGRVAALFALGGAQGLVGWWMVKSGLEDRS-EDLATGKQVRVSPYRLAAHLATAFVTFSLLVHTGFQALSGPQSGSLSAEARPLLDAGLLRQASRLRVVAAGVCGVAFVTAVSGAFVAGNDAGRCYNCFPKMTEENWLPEE 618
EW+ EFE YK FPE+QQR+ MT+++FK I++WEY HRMLGR +G++Y +PL+YFGLR ++P + R A LF LG AQG VGWWMV+SGLE+ E L +VRVSPYRLA HLA AF T +L+ TGF +S P S +A R ++ +L+Q +R+R + V V T +SGAFVAG DAG +N FPKM ++ W+P++
Sbjct: 135 EWQAEFETYKQFPEYQQRKNMTVEDFKGIFWWEYGHRMLGRTVGMVYTLPLIYFGLRKKLPVELYTRFAVLFGLGAAQGGVGWWMVRSGLEEHGREQLQKKNEVRVSPYRLATHLAFAFTTLGVLIWTGFGLISPP---SRAAMTREMISPDVLKQTTRIRKILGHVSTVLGYTIISGAFVAGIDAGMAFNTFPKM-DDQWIPDD 335 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13973.2764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13973.2764.1 >prot_H-elongata_contig13973.2764.1 ID=prot_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp KAEWETEFERYKAFPEWQQRRTMTLDEFKDIYFWEYAHRMLGRALGVIYGback to top mRNA from alignment at H-elongata_contig13973:1658..3447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13973.2764.1 ID=mRNA_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig13973:1658..3447- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13973:1658..3447- >mRNA_H-elongata_contig13973.2764.1 ID=mRNA_H-elongata_contig13973.2764.1|Name=mRNA_H-elongata_contig13973.2764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig13973:1658..3447- (Himanthalia elongata Himel1 dioecious)back to top |