mRNA_H-elongata_contig13971.2762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13971.2762.1
Unique NamemRNA_H-elongata_contig13971.2762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.790e-8
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVYE 132
            Y+V+C+CG    D    G G C  PC GD  EICGG +AMSVYE
Sbjct:  206 YSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 249          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVYE 132
            Y+V+C+CG    D    G G C  PC GD  EICGG +AMSVYE
Sbjct:  376 YSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 419          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.580e-8
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVYE 132
            Y+V+C+CG    D    G G C  PC+GD +EICGG +AMSVYE
Sbjct:  239 YSVECWCGAEGADYDANGEGICDIPCSGDVNEICGGFYAMSVYE 282          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A6P4XE11_BRABE (IgGFc-binding protein-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XE11_BRABE)

HSP 1 Score: 56.6 bits (135), Expect = 5.000e-8
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVY 129
            YA QCFCG A +   +   G C K C G++ EICGG W MSVY
Sbjct:  178 YASQCFCGTAAEFARLRSSGGCNKRCKGNSKEICGGTWRMSVY 220          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A8B6GEL1_MYTGA (WSC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GEL1_MYTGA)

HSP 1 Score: 51.2 bits (121), Expect = 1.980e-7
Identity = 26/53 (49.06%), Postives = 29/53 (54.72%), Query Frame = 1
Query:    4 AVQCFCGEATDDPTILGPGT----------CAKPCAGDTSEICGGVWAMSVYE 132
            A QCFCG   DDP   GPG           C K C GD+ +ICGG W +SVYE
Sbjct:    2 ANQCFCG---DDPYQYGPGDVSDYYLGDYDCDKQCCGDSEQICGGRWRLSVYE 51          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A8H3QLY2_9GLOM (WSC domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QLY2_9GLOM)

HSP 1 Score: 54.3 bits (129), Expect = 3.140e-7
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 QCFCGEATDDPT-ILGPGTCAKPCAGDTSEICGGVWAMSVYEYTYTS 147
            QCFCG + D    +LG G C+  C G+ S+ICG +WA+S+YE    S
Sbjct:  218 QCFCGNSYDSMEGLLGSGYCSASCPGNNSQICGSIWALSIYEVPINS 264          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: UPI001459189B (uncharacterized protein LOC117321161 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459189B)

HSP 1 Score: 54.3 bits (129), Expect = 3.270e-7
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVY 129
            Y  QC+CG+  D  ++     C  PCAG++ EICGG W +SVY
Sbjct:   85 YRTQCYCGDNHDRHSMASESDCNTPCAGNSKEICGGTWRISVY 127          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A8H4G5Q1_9EURO (Uncharacterized protein n=1 Tax=Aspergillus lentulus TaxID=293939 RepID=A0A8H4G5Q1_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 3.470e-7
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVY 129
            +  QCFCG + D+  +L  G CA PCAGD++E+CGG  A+S+Y
Sbjct:  205 FGTQCFCGNSFDNGGVLTSG-CATPCAGDSTEVCGGSKALSMY 246          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.620e-7
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 1
Query:    1 YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVYE 132
            Y+ +C+CG    D    G G C  PC GD  EICGG +A+SVYE
Sbjct:  149 YSEECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAISVYE 192          
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Match: A0A2I1EFX3_9GLOM (WSC-domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1EFX3_9GLOM)

HSP 1 Score: 53.9 bits (128), Expect = 4.220e-7
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   10 QCFCGEATDDPT-ILGPGTCAKPCAGDTSEICGGVWAMSVYEYTY 141
            QCFCG + D    +LG   C   C G+ S+ICGG+WA+S+YE  Y
Sbjct:  216 QCFCGNSYDSINRLLGSEHCRASCPGNNSQICGGIWALSIYEVHY 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13971.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQV8_9PHAE1.790e-854.55WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K646_9PHAE1.940e-854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE2.580e-854.55WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6P4XE11_BRABE5.000e-853.49IgGFc-binding protein-like n=1 Tax=Branchiostoma b... [more]
A0A8B6GEL1_MYTGA1.980e-749.06WSC domain-containing protein n=1 Tax=Mytilus gall... [more]
A0A8H3QLY2_9GLOM3.140e-746.81WSC domain-containing protein n=2 Tax=Rhizophagus ... [more]
UPI001459189B3.270e-746.51uncharacterized protein LOC117321161 n=1 Tax=Pecte... [more]
A0A8H4G5Q1_9EURO3.470e-751.16Uncharacterized protein n=1 Tax=Aspergillus lentul... [more]
A0A6H5JU45_9PHAE3.620e-750.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2I1EFX3_9GLOM4.220e-748.89WSC-domain-containing protein n=3 Tax=Rhizophagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13971contigH-elongata_contig13971:6931..7080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.2675416-CDS-H-elongata_contig13971:6930..70801622929830.2675416-CDS-H-elongata_contig13971:6930..7080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13971 6931..7080 -
1691679175.0726101-CDS-H-elongata_contig13971:6930..70801691679175.0726101-CDS-H-elongata_contig13971:6930..7080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13971 6931..7080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13971.2762.1prot_H-elongata_contig13971.2762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13971 6931..7080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13971.2762.1

>prot_H-elongata_contig13971.2762.1 ID=prot_H-elongata_contig13971.2762.1|Name=mRNA_H-elongata_contig13971.2762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
YAVQCFCGEATDDPTILGPGTCAKPCAGDTSEICGGVWAMSVYEYTYTS*
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mRNA from alignment at H-elongata_contig13971:6931..7080-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13971.2762.1 ID=mRNA_H-elongata_contig13971.2762.1|Name=mRNA_H-elongata_contig13971.2762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig13971:6931..7080- (Himanthalia elongata Himel1 dioecious)
TATGCTGTACAGTGTTTCTGCGGAGAAGCAACGGACGACCCCACTATCCT TGGTCCTGGAACCTGTGCAAAGCCCTGCGCTGGCGATACATCAGAGATTT GCGGTGGTGTGTGGGCTATGTCTGTGTACGAGTACACCTACACATCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13971:6931..7080-

>mRNA_H-elongata_contig13971.2762.1 ID=mRNA_H-elongata_contig13971.2762.1|Name=mRNA_H-elongata_contig13971.2762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig13971:6931..7080- (Himanthalia elongata Himel1 dioecious)
TATGCTGTACAGTGTTTCTGCGGAGAAGCAACGGACGACCCCACTATCCT
TGGTCCTGGAACCTGTGCAAAGCCCTGCGCTGGCGATACATCAGAGATTT
GCGGTGGTGTGTGGGCTATGTCTGTGTACGAGTACACCTACACATCTTGA
TATGCTGTACAGTGTTTCTGCGGAGAAGCAACGGACGACCCCACTATCCT
TGGTCCTGGAACCTGTGCAAAGCCCTGCGCTGGCGATACATCAGAGATTT
GCGGTGGTGTGTGGGCTATGTCTGTGTACGAGTACACCTACACATCTTGA
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