mRNA_H-elongata_contig139702.2761.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139702.2761.1
Unique NamemRNA_H-elongata_contig139702.2761.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139702.2761.1 vs. uniprot
Match: A0A6H5KP75_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP75_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.930e-61
Identity = 190/379 (50.13%), Postives = 221/379 (58.31%), Query Frame = 1 
Query:   13 ARTIDISVEGLESQHATATAIPTATAXPAGAPRAASAGTASDDDDSWGARSEAENPGALRRSGSNSSISTLDSTSTASSTWPGSVGFMTPARTDISRGMGRPS-GRGRSHASSASGTSDSFSAGLRTPASHAGATPGRAE--PDTPSPRSGSGSVYGTPHPPEMRLAQFARASTGGN--ALHGLPEMEVGRSPSASIAECGTGGCD----SGNNTPLTASTIAXXXXXXXXGFGPSSRGGAISPEDVASPTMLPTLT---PARVRHPGGGDDEYHASRRISARKSIRSTGTA-SSPGTSGRLGEPDAVGGAIGAAVGGRGGLSMGPEAAAQAFTEEAELEALQIDKNDLKLVFGRPFARGKSSEVYQVTHEGRNRAAKV 1110
            A T+  S EGL      A  +    A PAG P A +AG   DDDDS  +RS+ ENPG LRR+GSNSSISTL STSTASSTWP   GF+TPAR +I RG G    G G        G       G +TP + + ATP R    P+TPSPRS S SV+GTP PP MR+AQF R   GG   +L+GLPEME+GRS S ++ E    G      S    P TA++IA XXX        ++     +P D A+P+ +   T   P      GG             R S RS+ TA +SP T G        GGA G   GG G   MG EAAAQAFTEEAELEALQIDKNDLKLVFGRPFARGKSSEVYQVTH G+NRAAK+
Sbjct:  702 AATVGDSAEGLPRPPTAAAVMAPGAAIPAGTPAAGTAG--GDDDDS--SRSDLENPGRLRRTGSNSSISTLGSTSTASSTWPND-GFVTPARNNIPRGAGGGRYGLGXXXXXXXEG----LPPGYKTPGNLSAATPNREMTIPETPSPRSVSSSVHGTPAPPGMRIAQFLRVGGGGGDTSLYGLPEMEIGRSTS-NLYESNPSGSSWPVGSKGGAPPTAASIAAXXX--------ATGSAQPTPGDGANPSPINNATATSPTAELDTGG-------------RMSNRSSRTAGASPTTWG-------AGGAWGDREGGGG---MGAEAAAQAFTEEAELEALQIDKNDLKLVFGRPFARGKSSEVYQVTHAGKNRAAKI 1039
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139702.2761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP75_9PHAE1.930e-6150.13Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139702contigH-elongata_contig139702:164..1557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue5.6e-54
Seed eggNOG ortholog2880.D7FZX4
Preferred nameRCCD1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1110
Cds size1110
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.2237365-CDS-H-elongata_contig139702:163..6461622929830.2237365-CDS-H-elongata_contig139702:163..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139702 164..646 +
1691679175.0502598-CDS-H-elongata_contig139702:163..6461691679175.0502598-CDS-H-elongata_contig139702:163..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139702 164..646 +
1622929830.2343743-CDS-H-elongata_contig139702:930..15571622929830.2343743-CDS-H-elongata_contig139702:930..1557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139702 931..1557 +
1691679175.0642512-CDS-H-elongata_contig139702:930..15571691679175.0642512-CDS-H-elongata_contig139702:930..1557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139702 931..1557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139702.2761.1prot_H-elongata_contig139702.2761.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139702 164..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139702.2761.1

>prot_H-elongata_contig139702.2761.1 ID=prot_H-elongata_contig139702.2761.1|Name=mRNA_H-elongata_contig139702.2761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=370bp
ASSSARTIDISVEGLESQHATATAIPTATATPAGAPRAASAGTASDDDDS
WGARSEAENPGALRRSGSNSSISTLDSTSTASSTWPGSVGFMTPARTDIS
RGMGRPSGRGRSHASSASGTSDSFSAGLRTPASHAGATPGRAEPDTPSPR
SGSGSVYGTPHPPEMRLAQFARASTGGNALHGLPEMEVGRSPSASIAECG
TGGCDSGNNTPLTASTIAAAAAAAAGGFGPSSRGGAISPEDVASPTMLPT
LTPARVRHPGGGDDEYHASRRISARKSIRSTGTASSPGTSGRLGEPDAVG
GAIGAAVGGRGGLSMGPEAAAQAFTEEAELEALQIDKNDLKLVFGRPFAR
GKSSEVYQVTHEGRNRAAKV
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mRNA from alignment at H-elongata_contig139702:164..1557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139702.2761.1 ID=mRNA_H-elongata_contig139702.2761.1|Name=mRNA_H-elongata_contig139702.2761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig139702:164..1557+ (Himanthalia elongata Himel1 dioecious)
GCGTCTTCCTCGGCCCGCACGATCGACATCTCCGTTGAGGGATTAGAGTC
TCAACACGCGACAGCCACCGCGATCCCAACGGCGACCGCCACACCGGCCG
GGGCACCCCGCGCGGCCTCCGCGGGGACGGCCTCGGACGACGACGACTCC
TGGGGCGCGCGGTCCGAGGCGGAGAACCCGGGGGCTCTGCGGAGATCTGG
GTCGAACTCGTCGATCAGCACGTTGGACTCGACGTCCACGGCATCGTCGA
CGTGGCCCGGTAGCGTAGGGTTCATGACGCCCGCCAGAACAGACATTTCG
CGCGGCATGGGAAGGCCTTCCGGGCGCGGTAGGAGCCACGCAAGTTCTGC
CAGCGGTACCTCAGACTCGTTTTCGGCCGGGCTTCGCACGCCGGCGTCGC
ACGCAGGGGCTACTCCGGGGAGGGCGGAGCCGGACACGCCGTCCCCGCGA
TCGGGGAGCGGTTCGGTTTATGGGACGCCGCACGTGAGCAGATGTTGGAA
GGGGTGAATGAATGGGGTAGGGTTGTGGGTTTTTGTTGAATGCATGCTAA
ATGGCATCGTGGCTTCGTTTTTCTTTTTCTCCATTTTTTTTTCTTCTTTT
TTTAATGCTTCATCCCTAATCTCTTTTTTTTTGCTTTTCGAAATATTTGA
TTCAAAATAATAGCCCGGAGTAATAATTTTCGCTTATCGTTTCTTTTTTT
TGAGCTATATGCCCTTCCCCTAGATAACCCCTTCCCCTCCCCTCTTATTT
ATTTTTATCATTTGCAGCCTCCCGAGATGAGGCTGGCACAATTCGCCAGG
GCCTCCACCGGCGGCAACGCGCTGCATGGCCTCCCCGAGATGGAAGTAGG
CCGCTCCCCGAGCGCGTCGATCGCAGAATGCGGCACCGGAGGCTGCGACA
GCGGAAACAATACTCCCCTTACAGCTTCAACCATCGCCGCCGCTGCAGCT
GCCGCCGCCGGAGGGTTCGGGCCTAGCAGCCGAGGCGGCGCCATCTCTCC
CGAGGACGTGGCTTCTCCGACGATGCTTCCTACCTTGACCCCGGCGAGGG
TCAGGCATCCAGGTGGGGGAGACGATGAGTACCACGCCAGTCGACGCATT
AGCGCTCGTAAGTCGATCCGGTCCACGGGCACCGCATCGTCTCCGGGAAC
TTCTGGAAGACTCGGCGAGCCGGATGCCGTCGGAGGTGCTATCGGAGCGG
CGGTCGGGGGAAGAGGTGGATTAAGCATGGGACCCGAGGCCGCGGCACAG
GCGTTCACGGAGGAGGCAGAGCTAGAGGCGCTCCAGATCGACAAGAATGA
CTTGAAGTTAGTGTTTGGTCGTCCATTCGCCCGAGGAAAGTCGTCCGAGG
TGTACCAAGTCACTCACGAGGGGAGGAACCGCGCTGCGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig139702:164..1557+

>mRNA_H-elongata_contig139702.2761.1 ID=mRNA_H-elongata_contig139702.2761.1|Name=mRNA_H-elongata_contig139702.2761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2220bp|location=Sequence derived from alignment at H-elongata_contig139702:164..1557+ (Himanthalia elongata Himel1 dioecious)
GCGTCTTCCTCGGCCCGCACGATCGACATCTCCGTTGAGGGATTAGAGTC
TCAACACGCGACAGCCACCGCGATCCCAACGGCGACCGCCACACCGGCCG
GGGCACCCCGCGCGGCCTCCGCGGGGACGGCCTCGGACGACGACGACTCC
TGGGGCGCGCGGTCCGAGGCGGAGAACCCGGGGGCTCTGCGGAGATCTGG
GTCGAACTCGTCGATCAGCACGTTGGACTCGACGTCCACGGCATCGTCGA
CGTGGCCCGGTAGCGTAGGGTTCATGACGCCCGCCAGAACAGACATTTCG
CGCGGCATGGGAAGGCCTTCCGGGCGCGGTAGGAGCCACGCAAGTTCTGC
CAGCGGTACCTCAGACTCGTTTTCGGCCGGGCTTCGCACGCCGGCGTCGC
ACGCAGGGGCTACTCCGGGGAGGGCGGAGCCGGACACGCCGTCCCCGCGA
TCGGGGAGCGGTTCGGTTTATGGGACGCCGCACGCGTCTTCCTCGGCCCG
CACGATCGACATCTCCGTTGAGGGATTAGAGTCTCAACACGCGACAGCCA
CCGCGATCCCAACGGCGACCGCCACACCGGCCGGGGCACCCCGCGCGGCC
TCCGCGGGGACGGCCTCGGACGACGACGACTCCTGGGGCGCGCGGTCCGA
GGCGGAGAACCCGGGGGCTCTGCGGAGATCTGGGTCGAACTCGTCGATCA
GCACGTTGGACTCGACGTCCACGGCATCGTCGACGTGGCCCGGTAGCGTA
GGGTTCATGACGCCCGCCAGAACAGACATTTCGCGCGGCATGGGAAGGCC
TTCCGGGCGCGGTAGGAGCCACGCAAGTTCTGCCAGCGGTACCTCAGACT
CGTTTTCGGCCGGGCTTCGCACGCCGGCGTCGCACGCAGGGGCTACTCCG
GGGAGGGCGGAGCCGGACACGCCGTCCCCGCGATCGGGGAGCGGTTCGGT
TTATGGGACGCCGCACCCTCCCGAGATGAGGCTGGCACAATTCGCCAGGG
CCTCCACCGGCGGCAACGCGCTGCATGGCCTCCCCGAGATGGAAGTAGGC
CGCTCCCCGAGCGCGTCGATCGCAGAATGCGGCACCGGAGGCTGCGACAG
CGGAAACAATACTCCCCTTACAGCTTCAACCATCGCCGCCGCTGCAGCTG
CCGCCGCCGGAGGGTTCGGGCCTAGCAGCCGAGGCGGCGCCATCTCTCCC
GAGGACGTGGCTTCTCCGACGATGCTTCCTACCTTGACCCCGGCGAGGGT
CAGGCATCCAGGTGGGGGAGACGATGAGTACCACGCCAGTCGACGCATTA
GCGCTCGTAAGTCGATCCGGTCCACGGGCACCGCATCGTCTCCGGGAACT
TCTGGAAGACTCGGCGAGCCGGATGCCGTCGGAGGTGCTATCGGAGCGGC
GGTCGGGGGAAGAGGTGGATTAAGCATGGGACCCGAGGCCGCGGCACAGG
CGTTCACGGAGGAGGCAGAGCTAGAGGCGCTCCAGATCGACAAGAATGAC
TTGAAGTTAGTGTTTGGTCGTCCATTCGCCCGAGGAAAGTCGTCCGAGGT
GTACCAAGTCACTCACGAGGGGAGGAACCGCGCTGCGAAGGTGCCTCCCG
AGATGAGGCTGGCACAATTCGCCAGGGCCTCCACCGGCGGCAACGCGCTG
CATGGCCTCCCCGAGATGGAAGTAGGCCGCTCCCCGAGCGCGTCGATCGC
AGAATGCGGCACCGGAGGCTGCGACAGCGGAAACAATACTCCCCTTACAG
CTTCAACCATCGCCGCCGCTGCAGCTGCCGCCGCCGGAGGGTTCGGGCCT
AGCAGCCGAGGCGGCGCCATCTCTCCCGAGGACGTGGCTTCTCCGACGAT
GCTTCCTACCTTGACCCCGGCGAGGGTCAGGCATCCAGGTGGGGGAGACG
ATGAGTACCACGCCAGTCGACGCATTAGCGCTCGTAAGTCGATCCGGTCC
ACGGGCACCGCATCGTCTCCGGGAACTTCTGGAAGACTCGGCGAGCCGGA
TGCCGTCGGAGGTGCTATCGGAGCGGCGGTCGGGGGAAGAGGTGGATTAA
GCATGGGACCCGAGGCCGCGGCACAGGCGTTCACGGAGGAGGCAGAGCTA
GAGGCGCTCCAGATCGACAAGAATGACTTGAAGTTAGTGTTTGGTCGTCC
ATTCGCCCGAGGAAAGTCGTCCGAGGTGTACCAAGTCACTCACGAGGGGA
GGAACCGCGCTGCGAAGGTG
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