mRNA_H-elongata_contig13947.2745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13947.2745.1
Unique NamemRNA_H-elongata_contig13947.2745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.820e-28
Identity = 67/129 (51.94%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLII 387
            F+DT FE N A  GGALRLAGT SI +CSFVEN S+ +GG AV NIG + S  N  F  N F+C   TFL +  S + FE VC GC   C  C+F +    PTCT LL    EH+TSS G  T+E L I
Sbjct: 1033 FVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADPLLVPTCTDLL----EHSTSSDGRDTLETLSI 1157          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.960e-27
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
            F+++ F+ N A  GG LRLAGT S++ CSFV+NIS+  GG AV NIG + S  N  F  N F+CDP  +L +  S   +E  C GC   CD C F     PTCT ++    EH TS+GG  T+E L +++
Sbjct:  679 FVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETACDGCFFEPPVPPTCTDVM----EHITSAGGTVTLEDLPVER 804          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.950e-27
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGT--PTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
            F+  +F  N+A  GGALR+AGT S+ENCSFV+N+S+   G A+ NIG++    +  F DN F+C   TFL    S + FE VC GC  +CD C F E+G   P C+ ++     H+TS+GGNTT++++ ID+
Sbjct:  649 FVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVF-EQGLVGPACSEVMA----HSTSTGGNTTLQEVSIDR 775          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.490e-25
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
            F++++FE N A  GGALRLAGT  + NCSFVEN+S+  GG AV NIG++ S +N  F  N + C    FL   +S   +E +C GC   C+ CSF E    P C+  L    EH+ SSGG  T++ L+I+
Sbjct:  399 FVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDAL----EHSNSSGGTVTLDALVIE 524          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.470e-24
Identity = 64/131 (48.85%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
            F+DT FE N A  GGALRLAGT SI NCSFVEN SN  GG AV NIG + S     F  N F+C    FL++ +SD+ FE VC GC       +F E    P C  LL    EH+TS  G  T+E L I +
Sbjct:  842 FVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLL----EHSTSPDGKLTLEALSIQR 968          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.180e-23
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTK-SDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
            F  ++FE N A  GGALRLAG     NCSFV N ++   G AV NIGY+ +  +N F  N F+C    +L F + SD+ FE++C GC   C+ C F E    P CT ++    EHATS GGN T+E L ID
Sbjct: 1042 FNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEGLLVPACTEVM----EHATSDGGNITLEALSID 1168          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.320e-23
Identity = 57/142 (40.14%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    1 IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSD------------EGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
            +F DT+F  N+A  GGALRLAG  S+ENCSFVEN+S+   G AV N+G +   +N  F  N FNC P TFL++T  D            +  +  C GC   CD C+      P    L    +  + S GG  T+E L+ID
Sbjct:  435 LFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGCA-----QPPAVPLCSDVIPDSRSDGGLVTLETLLID 571          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.780e-21
Identity = 57/134 (42.54%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTK-----SDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
            F  ++FE N A  GGALRLAG+    NC+FV N ++   G AV NIGY+    N  F  N F+C  + +L F +     SD  FE++C GC   C  C       P CT ++    EHATS GGN T+E L ID
Sbjct:  768 FNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTCKGCVNDGLLVPACTEVM----EHATSDGGNITLEALSID 897          
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-20
Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 1
Query:    1 IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
            +F+D LF       GGALRLAGT ++ENCSFVEN+S   GG AV NIG +    N  +R N F+C    FL F  S +  E  C GC   CD     E+  P    +    +EH  S+GG   +  L +D
Sbjct: 1487 VFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGCFEE--PPLVPICALAMEHTGSAGGTNNITLLRVD 1614          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LSC0_ECTSI7.820e-2851.94Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G301_ECTSI1.960e-2744.62Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTL7_ECTSI4.950e-2744.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2Z8_ECTSI1.490e-2544.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIY0_ECTSI2.470e-2448.85Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTI5_ECTSI1.180e-2345.80Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5KR67_9PHAE5.320e-2340.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1P8_9PHAE5.780e-2142.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI2.040e-2040.77Polymorphic Outer membrane protein G/I family n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13947contigH-elongata_contig13947:1844..2790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue8.2e-24
Seed eggNOG ortholog2880.D8LSC0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.7269042-CDS-H-elongata_contig13947:1843..20111622929827.7269042-CDS-H-elongata_contig13947:1843..2011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13947 1844..2011 -
1691679174.4886773-CDS-H-elongata_contig13947:1843..20111691679174.4886773-CDS-H-elongata_contig13947:1843..2011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13947 1844..2011 -
1622929827.7382073-CDS-H-elongata_contig13947:2565..27901622929827.7382073-CDS-H-elongata_contig13947:2565..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13947 2566..2790 -
1691679174.5029576-CDS-H-elongata_contig13947:2565..27901691679174.5029576-CDS-H-elongata_contig13947:2565..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13947 2566..2790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13947.2745.1prot_H-elongata_contig13947.2745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13947 1844..2790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13947.2745.1

>prot_H-elongata_contig13947.2745.1 ID=prot_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYM
PSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG
TPTCTSLLQAGVEHATSSGGNTTVEQLIIDK
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mRNA from alignment at H-elongata_contig13947:1844..2790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13947.2745.1 ID=mRNA_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=947bp|location=Sequence derived from alignment at H-elongata_contig13947:1844..2790- (Himanthalia elongata Himel1 dioecious)
ATATTCCTTGATACTTTGTTCGAGAGGAATGAGGCAGCTGTTGGGGGGGC CTTGAGACTTGCTGGGACGGTTTCCATCGAAAACTGTTCCTTTGTTGAAA ACATTTCCAACCTCGACGGGGGACCAGCCGTATTCAATATCGGCTACATG CCAAGCTTCACCAACAACAAGTTCCGCGACAACTTCTTCAACTGCGACCC TCAGACGTTTCTAAGCTTTACGAAGGCAAGGTTACCTTTATAATCTAGGG ATATATGTTCCAATCACAGCTACCCAACCGTGACAGTTACTATGTACGTA AATAAGTAAGCATTTTCCTTTCTTATAAAATAAAATAAATAATATAAGCT ATTTCGTTTTAAAAGTAAAATTCATTTAAGCGCACCAGTACATACTTTTC CATCTCTTCAGTTTCGGCAGTTTCATACCTTCTTTGGCAGTCACTCTTAC TCTGTAGTTTCTGAAGTTCTTGATTGAAATACTAACCACGTACTGTATAT ATCATGAGCGCTATGGAGCGTACGAAATCGTCTTTAATATAGTTTGTTCG CGGGCCCAGGTGCTCTTCTAGCTAATCCTGTCTAACAGTCTTTAGTTAGT ACATAATAAATGGAGACACATTGTGAAGAGGTTGATGGAGAGGTTTTCGC ACAACCTTTCGAGAATCGTTACCGAGTATTAGTTGAGCGGCGTTAAGGCG TTTGTTACAAATCTTGTGCGTTCAATGTATTGTTCGTACCAGCTAATGCT CATTTTCTTGTTCCTCCATCTGGTCGCAGTCGGATGAAGGCTTCGAAATT GTCTGCAAAGGATGCATTGGCATATGCGACAAATGTTCCTTCGGGGAGAA GGGTACTCCGACGTGTACATCACTGCTACAGGCAGGAGTTGAACATGCTA CAAGTAGCGGAGGCAACACAACCGTGGAGCAGCTAATAATTGACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig13947:1844..2790-

>mRNA_H-elongata_contig13947.2745.1 ID=mRNA_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig13947:1844..2790- (Himanthalia elongata Himel1 dioecious)
ATATTCCTTGATACTTTGTTCGAGAGGAATGAGGCAGCTGTTGGGGGGGC
CTTGAGACTTGCTGGGACGGTTTCCATCGAAAACTGTTCCTTTGTTGAAA
ACATTTCCAACCTCGACGGGGGACCAGCCGTATTCAATATCGGCTACATG
CCAAGCTTCACCAACAACAAGTTCCGCGACAACTTCTTCAACTGCGACCC
TCAGACGTTTCTAAGCTTTACGAAGATATTCCTTGATACTTTGTTCGAGA
GGAATGAGGCAGCTGTTGGGGGGGCCTTGAGACTTGCTGGGACGGTTTCC
ATCGAAAACTGTTCCTTTGTTGAAAACATTTCCAACCTCGACGGGGGACC
AGCCGTATTCAATATCGGCTACATGCCAAGCTTCACCAACAACAAGTTCC
GCGACAACTTCTTCAACTGCGACCCTCAGACGTTTCTAAGCTTTACGAAG
TCGGATGAAGGCTTCGAAATTGTCTGCAAAGGATGCATTGGCATATGCGA
CAAATGTTCCTTCGGGGAGAAGGGTACTCCGACGTGTACATCACTGCTAC
AGGCAGGAGTTGAACATGCTACAAGTAGCGGAGGCAACACAACCGTGGAG
CAGCTAATAATTGACAAGTCGGATGAAGGCTTCGAAATTGTCTGCAAAGG
ATGCATTGGCATATGCGACAAATGTTCCTTCGGGGAGAAGGGTACTCCGA
CGTGTACATCACTGCTACAGGCAGGAGTTGAACATGCTACAAGTAGCGGA
GGCAACACAACCGTGGAGCAGCTAATAATTGACAAG
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