mRNA_H-elongata_contig13947.2745.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 117 bits (292), Expect = 7.820e-28 Identity = 67/129 (51.94%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLII 387
F+DT FE N A GGALRLAGT SI +CSFVEN S+ +GG AV NIG + S N F N F+C TFL + S + FE VC GC C C+F + PTCT LL EH+TSS G T+E L I
Sbjct: 1033 FVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADPLLVPTCTDLL----EHSTSSDGRDTLETLSI 1157
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 115 bits (289), Expect = 1.960e-27 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
F+++ F+ N A GG LRLAGT S++ CSFV+NIS+ GG AV NIG + S N F N F+CDP +L + S +E C GC CD C F PTCT ++ EH TS+GG T+E L +++
Sbjct: 679 FVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETACDGCFFEPPVPPTCTDVM----EHITSAGGTVTLEDLPVER 804
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 114 bits (286), Expect = 4.950e-27 Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGT--PTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
F+ +F N+A GGALR+AGT S+ENCSFV+N+S+ G A+ NIG++ + F DN F+C TFL S + FE VC GC +CD C F E+G P C+ ++ H+TS+GGNTT++++ ID+
Sbjct: 649 FVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVF-EQGLVGPACSEVMA----HSTSTGGNTTLQEVSIDR 775
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.490e-25 Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
F++++FE N A GGALRLAGT + NCSFVEN+S+ GG AV NIG++ S +N F N + C FL +S +E +C GC C+ CSF E P C+ L EH+ SSGG T++ L+I+
Sbjct: 399 FVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDAL----EHSNSSGGTVTLDALVIE 524
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 107 bits (266), Expect = 2.470e-24 Identity = 64/131 (48.85%), Postives = 75/131 (57.25%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIIDK 393
F+DT FE N A GGALRLAGT SI NCSFVEN SN GG AV NIG + S F N F+C FL++ +SD+ FE VC GC +F E P C LL EH+TS G T+E L I +
Sbjct: 842 FVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLL----EHSTSPDGKLTLEALSIQR 968
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.180e-23 Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTK-SDEGFEIVCKGCIGICDKCSFGEKG-TPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
F ++FE N A GGALRLAG NCSFV N ++ G AV NIGY+ + +N F N F+C +L F + SD+ FE++C GC C+ C F E P CT ++ EHATS GGN T+E L ID
Sbjct: 1042 FNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEGLLVPACTEVM----EHATSDGGNITLEALSID 1168
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 103 bits (256), Expect = 5.320e-23 Identity = 57/142 (40.14%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 1 IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSD------------EGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
+F DT+F N+A GGALRLAG S+ENCSFVEN+S+ G AV N+G + +N F N FNC P TFL++T D + + C GC CD C+ P L + + S GG T+E L+ID
Sbjct: 435 LFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGCA-----QPPAVPLCSDVIPDSRSDGGLVTLETLLID 571
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 5.780e-21 Identity = 57/134 (42.54%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 4 FLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTK-----SDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
F ++FE N A GGALRLAG+ NC+FV N ++ G AV NIGY+ N F N F+C + +L F + SD FE++C GC C C P CT ++ EHATS GGN T+E L ID
Sbjct: 768 FNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTCKGCVNDGLLVPACTEVM----EHATSDGGNITLEALSID 897
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.040e-20 Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 1
Query: 1 IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMPSFTNNKFRDNFFNCDPQTFLSFTKSDEGFEIVCKGCIGICDKCSFGEKGTPTCTSLLQAGVEHATSSGGNTTVEQLIID 390
+F+D LF GGALRLAGT ++ENCSFVEN+S GG AV NIG + N +R N F+C FL F S + E C GC CD E+ P + +EH S+GG + L +D
Sbjct: 1487 VFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGCFEE--PPLVPICALAMEHTGSAGGTNNITLLRVD 1614 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13947.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13947.2745.1 >prot_H-elongata_contig13947.2745.1 ID=prot_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp IFLDTLFERNEAAVGGALRLAGTVSIENCSFVENISNLDGGPAVFNIGYMback to top mRNA from alignment at H-elongata_contig13947:1844..2790- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13947.2745.1 ID=mRNA_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=947bp|location=Sequence derived from alignment at H-elongata_contig13947:1844..2790- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13947:1844..2790- >mRNA_H-elongata_contig13947.2745.1 ID=mRNA_H-elongata_contig13947.2745.1|Name=mRNA_H-elongata_contig13947.2745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig13947:1844..2790- (Himanthalia elongata Himel1 dioecious)back to top |