mRNA_H-elongata_contig13939.2743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13939.2743.1
Unique NamemRNA_H-elongata_contig13939.2743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Match: D7G4P7_ECTSI (DUF4168 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4P7_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 1.520e-70
Identity = 127/202 (62.87%), Postives = 148/202 (73.27%), Query Frame = 1 
Query:    1 AGNIIRSNGLTTHRYNELSHILSKRKDLRDKVQHQAYLYRVNADVRGDRKQPLVD-----------LPDTPPSLRERRRPLELLYSLVHDKVAETKQLPGVSNKKMLFAKSLKEIEALRRRQRRRLMKELGCDELPPGLCQPSMGGIGIAPRVTKACQRFPVVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRCLHKL 573
            AGNIIRSNGLTT+RYN+LSHIL KRKDLR +VQHQAYLYRVNAD+RG + +PL D            P +P S  ERRR +         +  +T +     +KKMLFAKSL+EIEALR RQRRRLMKE+G ++LP GLC+P MG I  +PR+ K CQ FPV AE IV+ANGL PEEFNRLSARSRAN LYRWQVLRC+ KL
Sbjct:    2 AGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPLPDPVVVGAEGDAAAPTSPRSKAERRRIVN------RGQQVKTPRAGPPPDKKMLFAKSLREIEALRSRQRRRLMKEVGSNDLPSGLCRPEMGRIA-SPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKL 196
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BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Match: A0A835YJ45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ45_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.500e-35
Identity = 85/191 (44.50%), Postives = 116/191 (60.73%), Query Frame = 1 
Query:    1 AGNIIRSNGLTTHRYNELSHILSKRKDLRDKVQHQAYLYRVNADVRGDRKQPLVDLPDTPPSLRERRRPLELLYSLVHDKVAETKQLPGVSNKKMLFAKSLKEIEALRRRQRRRLMKELGCDELPPGLCQPSMGGIGIAPRVTKACQRFPVVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRCLHKL 573
            AG II S  L+  R+N+L+ ++++ K L  +V  QAYLYRV A++ GD+  P+ DL +     R  R   E               L G   K  LFAKSL+E+E+LR  QRRRLM+ L  DELP GLC   M  +  +P V +AC++FP+ A  +VRANGL  EEFNRL  R++ N +YR++VLR +HKL
Sbjct:  119 AGRIITSCDLSISRFNQLTKLVAQDKQLASRVNRQAYLYRVGAELHGDKFLPVEDLREAAKGGRSGRGNGEFSDGA---NGLSAMALLGQPKKLRLFAKSLREVESLRMEQRRRLMETLEVDELPQGLCMTRMARVS-SPIVRRACEQFPLQAAAVVRANGLRTEEFNRLLQRAQKNLVYRYRVLRLVHKL 305
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BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Match: A0A4D9D076_9STRA (DUF4168 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D076_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-13
Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  286 LFAKSLKEIEALRRRQRRRLMKELGCDELPPGLCQPSMGGIGIAPRVTKACQRFPVVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRCL 564
            LFAKSL+EIEALR  Q   L +E   D LPPG   PS+  I +  +V   C RFPV AE I + NG    EFN L  ++  NP +RW+V R +
Sbjct:  281 LFAKSLREIEALRAEQNHLLKQEFHVDTLPPGATDPSLFPI-LNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKAEKNPFFRWRVERLM 372
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BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Match: W7TRM5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRM5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-12
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  286 LFAKSLKEIEALRRRQRRRLMKELGCDELPPGLCQPSMGGIGIAPRVTKACQRFPVVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRC 561
            LFAKSL+EIEALR  Q   L +E   D LPPG   PS+  I +  +V   C RFPV AE I + NG    EFN L  ++  NP +RW+   C
Sbjct:  210 LFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPI-LNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQAC 300
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BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Match: A0A7S3JPY0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.300e-9
Identity = 53/194 (27.32%), Postives = 98/194 (50.52%), Query Frame = 1 
Query:   25 GLTTHRYNELSHILSKRKDLRDKVQHQAYLYRVNADVRGDRKQPLVDLPDTPPSLRERRRPLELLYSLVHDKV--AETKQLP--------GVSNKKMLFAKSLKEIEALRRRQRRRLMKELGCDELPP-GLCQPSMGGIGIAPRVTKACQRFPVVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRCLHKL 573
            GL+   +N +S  ++   DL+ KV HQAYLYR+ + +   ++ P++    T     +      +  S   D +  A  KQ P          ++   LFA   K+++ L+++QR +L+  L  DE P   +C   +    ++  V   C+ FP  AE +VR+ G++   F +L A+  ++P++RW++ R + +L
Sbjct:  138 GLSVSEFNTISRTVAGSPDLKQKVLHQAYLYRLASKI-DTKRDPIIAPSQTIGGSSDSTSSSTITRSPPDDTLLKAYNKQNPRGSTALDGATADSIKLFASLAKQVQHLQQQQRAQLVSTLKIDEFPDLPICDDRVLPF-MSQEVRDLCRAFPAKAEALVRSYGVDYSSFEKLLAKVDSDPIFRWRLKRQMRQL 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13939.2743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4P7_ECTSI1.520e-7062.87DUF4168 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YJ45_9STRA5.500e-3544.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D076_9STRA2.360e-1347.31DUF4168 domain-containing protein n=1 Tax=Nannochl... [more]
W7TRM5_9STRA1.100e-1246.74Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3JPY0_9STRA2.300e-927.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13939contigH-elongata_contig13939:2584..5992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue3.7e-57
Seed eggNOG ortholog2880.D7G4P7
EggNOG free text desc.Domain of unknown function (DUF4168)
EggNOG OGs2E26C@1,2S9ES@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size576
Cds size576
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13939.2743.1prot_H-elongata_contig13939.2743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13939 2584..5992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.5851355-CDS-H-elongata_contig13939:2583..27701622929827.5851355-CDS-H-elongata_contig13939:2583..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 2584..2770 +
1691679174.4213445-CDS-H-elongata_contig13939:2583..27701691679174.4213445-CDS-H-elongata_contig13939:2583..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 2584..2770 +
1622929827.6021109-CDS-H-elongata_contig13939:3237..34011622929827.6021109-CDS-H-elongata_contig13939:3237..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 3238..3401 +
1691679174.433762-CDS-H-elongata_contig13939:3237..34011691679174.433762-CDS-H-elongata_contig13939:3237..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 3238..3401 +
1622929827.6254022-CDS-H-elongata_contig13939:4588..47431622929827.6254022-CDS-H-elongata_contig13939:4588..4743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 4589..4743 +
1691679174.4429262-CDS-H-elongata_contig13939:4588..47431691679174.4429262-CDS-H-elongata_contig13939:4588..4743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 4589..4743 +
1622929827.6380022-CDS-H-elongata_contig13939:5922..59921622929827.6380022-CDS-H-elongata_contig13939:5922..5992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 5923..5992 +
1691679174.4546058-CDS-H-elongata_contig13939:5922..59921691679174.4546058-CDS-H-elongata_contig13939:5922..5992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13939 5923..5992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13939.2743.1

>prot_H-elongata_contig13939.2743.1 ID=prot_H-elongata_contig13939.2743.1|Name=mRNA_H-elongata_contig13939.2743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
AGNIIRSNGLTTHRYNELSHILSKRKDLRDKVQHQAYLYRVNADVRGDRK
QPLVDLPDTPPSLRERRRPLELLYSLVHDKVAETKQLPGVSNKKMLFAKS
LKEIEALRRRQRRRLMKELGCDELPPGLCQPSMGGIGIAPRVTKACQRFP
VVAEHIVRANGLNPEEFNRLSARSRANPLYRWQVLRCLHKL*
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mRNA from alignment at H-elongata_contig13939:2584..5992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13939.2743.1 ID=mRNA_H-elongata_contig13939.2743.1|Name=mRNA_H-elongata_contig13939.2743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3409bp|location=Sequence derived from alignment at H-elongata_contig13939:2584..5992+ (Himanthalia elongata Himel1 dioecious)
GCGGGCAACATAATTCGGTCGAACGGACTGACAACCCACCGTTACAACGA
GTTGAGCCACATCCTGAGCAAGCGAAAAGATCTTCGGGACAAGGTGCAAC
ACCAAGCCTATCTCTACCGCGTCAACGCTGACGTCAGAGGAGACAGGAAG
CAACCCCTCGTGGATCTGCCCGACACCCCGCCTTCGTGTCCGGGGGGTCC
CTTGACCAAAGAACACCACCAGCAGCAGCAGGTGCCCCTCCTCGGCTAAT
AGTGGTGGGATTACTATTCTTGAGAACAAGGCGTTATCCCCCCCCCCCCC
CCCCCCCCCCCCTCTCGTGTGTGTGTTTAAAATTTAAATATTTAAACACA
GACAAACCCCTCGTTCCNNNNNNNNNNAAAACAAGGTGTTCTCCCCCCCC
CCCCCCTATTTCACGTGTGTGTATATTATTAAATTGAACACTGTATAACC
GCGCAATCCGTCATTGGCCCTGTCATTCTAGACTACTCTCGCATTGATCC
TCCCAATGGGGGATCAATGACTTCGTGTGCGTATCTGTGTCTATTTATTA
AATTGTACATAACCGCGCAATCCGCCCTTATTATGCCTAGTCCTTCTAGG
CTACTCTCGCATTGATCCTCCCTCCCAATGGGGGATCGTGTGTGTGTATG
CGAGTACGTGAGCGTCGCCGTCCTCTTGAGCTTCTGTATTCCCTTGTGCA
CGATAAGGTGGCGGAGACGAAGCAACTTCCCGGTGTCTCCAACAAGAAGA
TGTTGTTCGCCAAGAGCCTTAAGGAGATAGAGGCTCTGCGTCGCCGACAG
AGGAGGCGCCTGATGAAGGTGAGCTCGAGAGGGCTTGCTAATTCTTCATA
CATAAAACCGACCCGACCAAGCCTCTGTCCCTCGCGTACAACATGTTGTC
ACAGCATTTACAGCATTTACAGCCTCTATTTAGGCTGACCGTAACAGGTA
TATCAGCGTCGCAATTATTCTCCCATTCTGCAATAAGAACGAAAATGACT
CGTCGCCGTGGCCGGTGGTGTATATTGCGAACCTCGCCGGGATAGGCATG
AAGTGACCCCGCTTGATATTAACTCCGGGTGTCCACGTATTAGGCATTAA
GTATCACTGTAACACGCATTAGCGGCAACATCAAAGTACAGTGGAAGTAT
GAACTATGTTCAAATGGGGGGGAGATTGTATTCATATCTCCTATATCCTC
CTATATCTCCCGAGGCCTGACCTGACGCCAATACAGCAGACGACGGATTG
TAGGATAAAGTATTACTAGTCATATGCCCTCCTCCCCACCCTTTATTTTT
GGATACTATACTATACTATACTGTACTATACTACATTATACTATACTATA
CTATACTGTACTATACTGTACTATATTATACTGTACTATACTGTACTATA
CTATACTATACTGTACTATACTACATTATATTATACTATACTATACTATA
CTATACTGTACTATACTACATTATACTGTACTATACTATACTACATTATA
CTGTACTATACTACATTATACTATACTATGACCACGGTTATGCAGAGAGC
CGCTGCATTATACTATAGAGCTATATGTAGAGGGCGTTATGACATTAGAC
TATGACGTTATGGTATTAGAAATATCGCCACCACCGCATCGCCTTGATAC
TAATACTGATATGAATACTAATAGTAATACTGATATTAATACTGATATTC
GACTATTATAGTGATGGAACGGTTTTACTAATGCTTATATTAATACAGTA
CTGATATTAATAATTAATAATGGATTGGTATTGATTTTGATATTGATTTT
GATGCGTTGAATAACTCTCAAAAAGCGTCGCCGTGGAGGAGGGAAAAGGT
GAAAAGCAATTTTCTCTCGCTTCTCGGGGGCACTTCTTCGTGAGAGGGAT
CGTGAATATCGTCAGAGGGGTTGTGCCCTGGGCCACGTGAATATCGTGAA
TATCGTCTCCACTCAGCCGAAAATTAAGTGTCGTGCTGCGCGTGGTCCTC
TCCAGGAGCTCGGTTGCGATGAGCTGCCACCGGGCCTGTGTCAGCCGTCG
ATGGGTGGCATCGGCATCGCACCCCGAGTGACGAAGGCGTGCCAAAGGTT
TCCCGTGGTGGCCGAGCACATCGTGAGGGCTAATGGGCTCAACCCCGAGG
AATTCAACAGGTACTGTAGAGTATAAATCAGTACTATATAGAAGATATAG
CGTGCAAGGAGCTCGATGTGAAATGTTCAGGGAGATATGAAACACGCAGA
TACACGGTACCATTTTGAACGATCGAGGCGTTTTTGTACTACTATATTAC
ATGCACTCCCGTTGTGGTTGGTGATGCCACGTGACCTACCGTTAGGAACA
CGGAAGACCAGCCTCTCTGGCGATGTAGCGATTTGGATCAATTTTATTTT
TTGTCAGTATCCCCTGCTCAGAGCTGTAGAGGCCGTGGTGGTGCTGCACT
CTAAACTTTCATTTCATTGAGATATTTCATTGAGATAAGAGTGCGCCCGA
AATCAAATAATCTTGCGAAAATAACGAGAGTCTTCTGAAATCAAGGAGGC
TCCATTACTAAAAGTACGGTTGACGTTAACCAAAGTACTCTTTATATATA
TATATATAGTTTGTTAATGGTAATGTCACCTCTTACGGTAATAATAAGGC
GTGGATGTCGGAGGGTTTGAATTATTTCATCTATTTTTACAAGAGGAAGA
TTGTCTATTAATGGTACTAATATTACTAAGATACAGTACTATATAAAGAG
TGCTGATGTAGGTTAGTTTGTGCAGTGTCATGTGAGCGCAGAGAGACCTC
GGTCGAAAGGCATGACACATTACATTCAACACTCGATAGCATGCTGCAGA
ACACTGGATTGTTGAAAAGATAGCCCTACAGTAACATAAGCTAATTAGAG
TACTCCTCCTGGAGTATCCACGAACATATTATACTAGTCTGAGCGTATCG
TACCTCCCGTATTTGTAGTGTACAAAAGTGTGTGCTTCCGGTGCTTATGC
GTTTGGATTATAATATAGTTTAATGACAATGACAATGACACCAGCTTGGT
TACCGGCTATATAGGCAATGCTTGGTTACCGGCTATATAGGTACTGTGTC
CTATGACGTCCAATGTCCAATGTCCAATTAACCCATGACATGGTATGGCA
TGTTCGGCGTGGCGTACCAAATGCAGGGATGATGACTAAAAGTTGGCATC
ATCCTTGTGGAACACAGCCTAGATAGGATACGGGATACGATACGGCTAGG
ATACGATACGGCTAGGATACGATACGGGATACGTTTGACAAGTACTTTCC
ACCACACCGCACCTAATTTTTGCATGTCGTATGTCGCAGGCTTTCCGCCA
GGAGTCGTGCCAACCCCTTATACAGATGGCAGGTCCTGCGGTGCTTGCAC
AAGCTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13939:2584..5992+

>mRNA_H-elongata_contig13939.2743.1 ID=mRNA_H-elongata_contig13939.2743.1|Name=mRNA_H-elongata_contig13939.2743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig13939:2584..5992+ (Himanthalia elongata Himel1 dioecious)
GCGGGCAACATAATTCGGTCGAACGGACTGACAACCCACCGTTACAACGA
GTTGAGCCACATCCTGAGCAAGCGAAAAGATCTTCGGGACAAGGTGCAAC
ACCAAGCCTATCTCTACCGCGTCAACGCTGACGTCAGAGGAGACAGGAAG
CAACCCCTCGTGGATCTGCCCGACACCCCGCCTTCGTGCGGGCAACATAA
TTCGGTCGAACGGACTGACAACCCACCGTTACAACGAGTTGAGCCACATC
CTGAGCAAGCGAAAAGATCTTCGGGACAAGGTGCAACACCAAGCCTATCT
CTACCGCGTCAACGCTGACGTCAGAGGAGACAGGAAGCAACCCCTCGTGG
ATCTGCCCGACACCCCGCCTTCGTTACGTGAGCGTCGCCGTCCTCTTGAG
CTTCTGTATTCCCTTGTGCACGATAAGGTGGCGGAGACGAAGCAACTTCC
CGGTGTCTCCAACAAGAAGATGTTGTTCGCCAAGAGCCTTAAGGAGATAG
AGGCTCTGCGTCGCCGACAGAGGAGGCGCCTGATGAAGTACGTGAGCGTC
GCCGTCCTCTTGAGCTTCTGTATTCCCTTGTGCACGATAAGGTGGCGGAG
ACGAAGCAACTTCCCGGTGTCTCCAACAAGAAGATGTTGTTCGCCAAGAG
CCTTAAGGAGATAGAGGCTCTGCGTCGCCGACAGAGGAGGCGCCTGATGA
AGGAGCTCGGTTGCGATGAGCTGCCACCGGGCCTGTGTCAGCCGTCGATG
GGTGGCATCGGCATCGCACCCCGAGTGACGAAGGCGTGCCAAAGGTTTCC
CGTGGTGGCCGAGCACATCGTGAGGGCTAATGGGCTCAACCCCGAGGAAT
TCAACAGGAGCTCGGTTGCGATGAGCTGCCACCGGGCCTGTGTCAGCCGT
CGATGGGTGGCATCGGCATCGCACCCCGAGTGACGAAGGCGTGCCAAAGG
TTTCCCGTGGTGGCCGAGCACATCGTGAGGGCTAATGGGCTCAACCCCGA
GGAATTCAACAGGCTTTCCGCCAGGAGTCGTGCCAACCCCTTATACAGAT
GGCAGGTCCTGCGGTGCTTGCACAAGCTATAGGCTTTCCGCCAGGAGTCG
TGCCAACCCCTTATACAGATGGCAGGTCCTGCGGTGCTTGCACAAGCTAT
AG
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