mRNA_H-elongata_contig13926.2738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13926.2738.1
Unique NamemRNA_H-elongata_contig13926.2738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13926.2738.1 vs. uniprot
Match: D8LBQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ5_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.740e-48
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 MFTDYVESIARKVKANPCHENPHWAPQYCHCSLDRTFSAYHIVGWANMTEAVVSAIVPGASTPERGREVAEFLRGRMESNHEKHGKKTEAALHVQEVYSEDMLGAVREAYAKDYILFSQYW 363
            MF  YV+ I R++K +PC +N HW+PQYCHCSLD T   + IVGWANMTE   +AIVP AS+P RG E+ EFL  RM++NHE+HGKKT A    QE Y+ + L AV EAYAKDY LFSQYW
Sbjct:    1 MFALYVDVITRRIKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEVASAAIVPFASSPARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTTEALQAVHEAYAKDYELFSQYW 121
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BLAST of mRNA_H-elongata_contig13926.2738.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.460e-45
Identity = 76/121 (62.81%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 MFTDYVESIARKVKANPCHENPHWAPQYCHCSLDRTFSAYHIVGWANMTEAVVSAIVPGASTPERGREVAEFLRGRMESNHEKHGKKTEAALHVQEVYSEDMLGAVREAYAKDYILFSQYW 363
            MF  YVE I R+VK +PC +N HW+PQYCHCSLD T   + IVGWANMTEA  +AIVP AS+  RG E+ EFL  RM++NHE+HGKKT A    QE Y+ + L AV EAYAKDY LFSQYW
Sbjct:  247 MFAPYVEVITRRVKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYW 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13926.2738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBQ5_ECTSI7.740e-4861.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKQ4_9PHAE2.460e-4562.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13926contigH-elongata_contig13926:2249..3424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue5.2e-12
Seed eggNOG ortholog2880.D7G2B9
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EWIE@1,2SYBY@2759
Ec32 ortholog descriptionprobable Sulfotransferase pseudogene
Ec32 orthologEc-27_003110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size369
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13926.2738.1prot_H-elongata_contig13926.2738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13926 2249..3424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.853215-CDS-H-elongata_contig13926:2248..23131622929826.853215-CDS-H-elongata_contig13926:2248..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 2249..2313 +
1691679174.272456-CDS-H-elongata_contig13926:2248..23131691679174.272456-CDS-H-elongata_contig13926:2248..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 2249..2313 +
1622929826.889194-CDS-H-elongata_contig13926:2686..29091622929826.889194-CDS-H-elongata_contig13926:2686..2909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 2687..2909 +
1691679174.2832685-CDS-H-elongata_contig13926:2686..29091691679174.2832685-CDS-H-elongata_contig13926:2686..2909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 2687..2909 +
1622929826.9030783-CDS-H-elongata_contig13926:3343..34241622929826.9030783-CDS-H-elongata_contig13926:3343..3424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 3344..3424 +
1691679174.2903671-CDS-H-elongata_contig13926:3343..34241691679174.2903671-CDS-H-elongata_contig13926:3343..3424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 3344..3424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13926.2738.1

>prot_H-elongata_contig13926.2738.1 ID=prot_H-elongata_contig13926.2738.1|Name=mRNA_H-elongata_contig13926.2738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MFTDYVESIARKVKANPCHENPHWAPQYCHCSLDRTFSAYHIVGWANMTE
AVVSAIVPGASTPERGREVAEFLRGRMESNHEKHGKKTEAALHVQEVYSE
DMLGAVREAYAKDYILFSQYWQ*
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mRNA from alignment at H-elongata_contig13926:2249..3424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13926.2738.1 ID=mRNA_H-elongata_contig13926.2738.1|Name=mRNA_H-elongata_contig13926.2738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1176bp|location=Sequence derived from alignment at H-elongata_contig13926:2249..3424+ (Himanthalia elongata Himel1 dioecious)
ATGTTCACCGACTACGTAGAATCCATCGCGCGAAAAGTCAAGGCGAATCC
CTGCCATGAAAATCCGTAAGTACGAGGCTCGCACGTGCGCTAGCGCTGTC
GCCAGACTCGTGGTGCATGGTGCATCATGTTTTTCTTCCAGCCGATCGAG
AAACGATCAAAGGAATCCTCCAATCGGAGAGAAAACCTTGGGCCGTCTTT
GGTTTGGTCCATTGAACATTTAATTGTCACGTCTTCGTTCTCGATGCTTG
GGTGCTCCCGATTAAATACGGCTTTCAGTTTTGGAGACTGGTAAAGCGCC
CAATACCCGCCCTCCCCCCCGTCGACCCGCCGCTTCGACGAACGTCTTGA
CGTCCCTAGTAACGTGTTCCTCCGTTCGAAGCCGCAAGCTACTCCGTGCC
TCTTTGCGTTTTACGTTTGTCCGTGACCCCGGGCGAAGTCACTGGGCGCC
ACAGTACTGTCACTGCTCGCTCGACCGAACCTTCTCTGCGTACCACATCG
TTGGTTGGGCGAACATGACCGAAGCTGTTGTATCGGCGATTGTCCCCGGG
GCTTCCACTCCGGAGCGAGGGAGGGAGGTCGCCGAGTTCCTCCGCGGTCG
GATGGAGAGTAACCACGAGAAACACGGCAAGAAGACGGAAGCGGCACTTC
ACGTTCAAGAGGTGAGAATCTAGGGAAGTGGAGGGGGGTATTTACTTGTC
TATCCGGTCTGTGGATTTATTTTGGGATTGTAAATAAGCCAAGCACGGGA
GCATTTTTGCCCTTTCGCCCTTTCGCTTCGCTTTATGTAGTGTGTGTGTG
TGTGTATGTATATATTAAACTGCACAGTGCGGGTGTGGGTGTGTGCGCGC
GTGCCAAGGAGTCACACGCTTGTCCACTGTGCATCGGTTTCCGTGCCCCT
ATTAAGATGCCTAAGCTTCCCCATGGAAAGACACGAGTACGTTAGTGAAA
AACAGCTCTCGCGAATTCCCCCAGTGCGACGGCTCTCGCAAAATGCTCAG
CAACAGAGGATCTTTGATTTGGACTTCCGCCTCCCCTACCCCCTGACCTC
TGCTACTTCCTGCTGTTGGATTTGTATTGCTACTCTCACGGAAAGGTATA
CTCGGAGGACATGCTCGGGGCCGTTCGTGAGGCCTATGCTAAGGATTACA
TTCTCTTCTCGCAGTACTGGCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig13926:2249..3424+

>mRNA_H-elongata_contig13926.2738.1 ID=mRNA_H-elongata_contig13926.2738.1|Name=mRNA_H-elongata_contig13926.2738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig13926:2249..3424+ (Himanthalia elongata Himel1 dioecious)
ATGTTCACCGACTACGTAGAATCCATCGCGCGAAAAGTCAAGGCGAATCC
CTGCCATGAAAATCCATGTTCACCGACTACGTAGAATCCATCGCGCGAAA
AGTCAAGGCGAATCCCTGCCATGAAAATCCTCACTGGGCGCCACAGTACT
GTCACTGCTCGCTCGACCGAACCTTCTCTGCGTACCACATCGTTGGTTGG
GCGAACATGACCGAAGCTGTTGTATCGGCGATTGTCCCCGGGGCTTCCAC
TCCGGAGCGAGGGAGGGAGGTCGCCGAGTTCCTCCGCGGTCGGATGGAGA
GTAACCACGAGAAACACGGCAAGAAGACGGAAGCGGCACTTCACGTTCAA
GAGTCACTGGGCGCCACAGTACTGTCACTGCTCGCTCGACCGAACCTTCT
CTGCGTACCACATCGTTGGTTGGGCGAACATGACCGAAGCTGTTGTATCG
GCGATTGTCCCCGGGGCTTCCACTCCGGAGCGAGGGAGGGAGGTCGCCGA
GTTCCTCCGCGGTCGGATGGAGAGTAACCACGAGAAACACGGCAAGAAGA
CGGAAGCGGCACTTCACGTTCAAGAGGTATACTCGGAGGACATGCTCGGG
GCCGTTCGTGAGGCCTATGCTAAGGATTACATTCTCTTCTCGCAGTACTG
GCAGTAAGTATACTCGGAGGACATGCTCGGGGCCGTTCGTGAGGCCTATG
CTAAGGATTACATTCTCTTCTCGCAGTACTGGCAGTAA
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