mRNA_H-elongata_contig139250.2736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139250.2736.1
Unique NamemRNA_H-elongata_contig139250.2736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.180e-48
Identity = 117/356 (32.87%), Postives = 176/356 (49.44%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPG----------------------------------GDQAIGVMAVASSESEYVALAEMVNELRFLRQVKAFITSQ 966
            ++Y  SSSP P+ +SI ++L +    G      DV  AY  A + EE++++LP        +     +A+YGL  +G  W       L   GF +  ADPCVFR++    VV++IV+YVDD+LVA  +  D ++ +  L   FP K++G+  ++ G  I RD  AGTL   Q  YI ++ E F V  TS +P+  G     K +        EE  + P RE +G++MW +T +RP +SFA   +A+    P   HW A QK L YL  TRDLGITY    G                                  G +   +++++S+E+EY+A  E V E  F+R V +F+  +
Sbjct:  816 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 1163          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 187 bits (476), Expect = 1.260e-48
Identity = 111/281 (39.50%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDL--LRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSI--VPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITY 831
            I+Y+E+ SP  ++ S  IV+ ++A   +E  Q+DV  A+L  D+ E++Y+  P  ++ S K+  +  L+K++YGL  A   W  KF   + + GF  +  D C++ +I  G+ ++ +V+YVDD+L+AS      ++  R L   F MK +G+AS+ LG  I RDR+ G L   Q  YI  V E F ++  S    P   G K LSKL  PQ D    EM +IPY   VG+LM+A   TRP I+FA   L +F   PG  HWRAA+K L+YL RT+D  +TY
Sbjct:  558 IDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 836          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.280e-48
Identity = 117/356 (32.87%), Postives = 176/356 (49.44%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPG----------------------------------GDQAIGVMAVASSESEYVALAEMVNELRFLRQVKAFITSQ 966
            ++Y  SSSP P+ +SI ++L +    G      DV  AY  A + EE++++LP        +     +A+YGL  +G  W       L   GF +  ADPCVFR++    VV++IV+YVDD+LVA  +  D ++ +  L   FP K++G+  ++ G  I RD  AGTL   Q  YI ++ E F V  TS +P+  G     K +        EE  + P RE +G++MW +T +RP +SFA   +A+    P   HW A QK L YL  TRDLGITY    G                                  G +   +++++S+E+EY+A  E V E  F+R V +F+  +
Sbjct: 1195 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 1542          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.290e-48
Identity = 117/356 (32.87%), Postives = 176/356 (49.44%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPG----------------------------------GDQAIGVMAVASSESEYVALAEMVNELRFLRQVKAFITSQ 966
            ++Y  SSSP P+ +SI ++L +    G      DV  AY  A + EE++++LP        +     +A+YGL  +G  W       L   GF +  ADPCVFR++    VV++IV+YVDD+LVA  +  D ++ +  L   FP K++G+  ++ G  I RD  AGTL   Q  YI ++ E F V  TS +P+  G     K +        EE  + P RE +G++MW +T +RP +SFA   +A+    P   HW A QK L YL  TRDLGITY    G                                  G +   +++++S+E+EY+A  E V E  F+R V +F+  +
Sbjct: 1215 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 1562          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.310e-48
Identity = 117/356 (32.87%), Postives = 176/356 (49.44%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPG----------------------------------GDQAIGVMAVASSESEYVALAEMVNELRFLRQVKAFITSQ 966
            ++Y  SSSP P+ +SI ++L +    G      DV  AY  A + EE++++LP        +     +A+YGL  +G  W       L   GF +  ADPCVFR++    VV++IV+YVDD+LVA  +  D ++ +  L   FP K++G+  ++ G  I RD  AGTL   Q  YI ++ E F V  TS +P+  G     K +        EE  + P RE +G++MW +T +RP +SFA   +A+    P   HW A QK L YL  TRDLGITY    G                                  G +   +++++S+E+EY+A  E V E  F+R V +F+  +
Sbjct: 1358 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 1705          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 186 bits (471), Expect = 1.980e-48
Identity = 109/281 (38.79%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDL--LRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSI--VPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITY 831
            ++Y+E+ SP  ++ S  IV+ ++A    E  Q+DV  A+L  D+ E++Y+  P+ ++ S K+  +  L+K++YGL  A   W  KF   + + GF  +  D C++ +I  G+ ++ +V+YVDD+L+AS      ++  R L   F MK +G+AS+ LG  I RDR+ G L   Q  YI  V E F ++  +    P   G K LSKL  PQ D    EM +IPY   VG+LM+A   TRP I+FA   L +F   PG  HWRAA+K L+YL RT+D  +TY
Sbjct:  356 VDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 634          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 178 bits (451), Expect = 2.540e-48
Identity = 106/281 (37.72%), Postives = 161/281 (57.30%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAY--RGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTS--IVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITY 831
            ++Y+E+ SP   + S+ IV+ ++A    E  Q+DV  A+L  ++ EE++++ PE +   G       L+K++YGL  A   W  KF   + + GF  +  D C++ +I  G+  +++V+YVDD+L+A+      +Q    L   F MK +G+ASY +G  I+RDR+ G L   Q  YI  V E F + K S  IVP   G K  S    P+ +   ++M QIPY  IVG+LM+A T TRP ISFA   L ++   PG  HW+AA+K L+YL  T+D  +TY
Sbjct:   42 VDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.340e-48
Identity = 119/351 (33.90%), Postives = 175/351 (49.86%), Query Frame = 1
Query:   16 SSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDLLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPG----------------------------------GDQAIGVMAVASSESEYVALAEMVNELRFLRQVKAFITSQ 966
            SSSP P+ +SI ++L +    G      DV  AY  A + EE++++LP        +     +A+YGL  +G  W       L   GF +  ADPCVFR++    VV++IV+YVDD+LVA  +  D ++ +  L   FP K++G+  ++ G  I RD +AGTL   Q  YI ++ E F V  TS +P+  G     K +    D G E     P RE VG++MW +T +RP +SFA   +A+    P   HW A QK L YL  TRDLGITY    G                                  G +A  +++++S+E+EY+A  E V E  F+R V +F+  +
Sbjct:  412 SSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED---DKGGEW----PVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 754          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 184 bits (468), Expect = 1.310e-47
Identity = 108/281 (38.43%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFDL--LRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSI--VPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITY 831
            ++Y+E+ SP  ++ S  IV+ ++A   +E  Q+DV  A+L  D+ E++Y+  P+ ++ S K+  +  L+K++YGL  A   W  KF   + + GF  +  D C++ +I  G+ ++ +V+YVDD+L+AS      ++  R L   F MK +G+AS+ LG  I RDR+ G L   Q  YI  V E F ++  +    P   G K LSKL  PQ D    EM +IPY   VG+LM+A   TRP I+FA   L +F   P   HWRAA+K L+YL RT+D  +TY
Sbjct:  714 VDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTY 992          
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Match: H3H9V9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9V9_PHYRM)

HSP 1 Score: 181 bits (459), Expect = 2.870e-47
Identity = 110/286 (38.46%), Postives = 165/286 (57.69%), Query Frame = 1
Query:    1 INYEESSSPTPAQSSIGIVLRIIAALGWEARQLDVDMAYLEADVKEEIYVELPEAYRGSRKQFD--LLRKAMYGLVHAGLLW*NKFGIDLDAKGFHRSHADPCVFRRIFHGTVVVVIVVYVDDLLVASVTKRDEKQAVRDLCSCFPMKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSAAGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQLAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPGGD 852
            ++Y E+ +P   + SI   + I A    EA  +DVD A+L  DV+EE+Y++ P+ +          LL +A+YG   A   W +K    L+ +GFHRS ADPCV+ R    +   +I+VYVDDL++ S TK +  +  + L   F +K +G+  Y LG  I R+R+  T+  +Q  YIQ +AE FGV K   V + A     SKL  P  D   + + + PYRE+VGALM+ AT TRP I+ A  ++AKF ++   +HW AA++ L+YL  T+DLG+ + G   G+
Sbjct:  394 VDYTETFAPVARKESINTAVAIAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQVNPTKKCLLMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVR-RSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSN--SKLVKPSEDE--DFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139250.2736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE1.180e-4832.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HDZ1_FAGSY1.260e-4839.50RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A6H5JZQ8_9PHAE1.280e-4832.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.290e-4832.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.310e-4832.87Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A2N9GV19_FAGSY1.980e-4838.79Integrase catalytic domain-containing protein n=6 ... [more]
A0A4V1T029_9SPHI2.540e-4837.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE4.340e-4833.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EBY4_FAGSY1.310e-4738.43Integrase catalytic domain-containing protein n=4 ... [more]
H3H9V9_PHYRM2.870e-4738.46CCHC-type domain-containing protein n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139250contigH-elongata_contig139250:66..1388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog67593.Physo133076
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1214
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139250.2736.1prot_H-elongata_contig139250.2736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139250 498..1269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.6057503-UTR-H-elongata_contig139250:65..4971622929826.6057503-UTR-H-elongata_contig139250:65..497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139250 66..497 +
1691679174.217442-UTR-H-elongata_contig139250:65..4971691679174.217442-UTR-H-elongata_contig139250:65..497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139250 66..497 +
1622929826.7342303-UTR-H-elongata_contig139250:1269..13881622929826.7342303-UTR-H-elongata_contig139250:1269..1388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139250 1270..1388 +
1691679174.240918-UTR-H-elongata_contig139250:1269..13881691679174.240918-UTR-H-elongata_contig139250:1269..1388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139250 1270..1388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.6405232-CDS-H-elongata_contig139250:497..9291622929826.6405232-CDS-H-elongata_contig139250:497..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139250 498..929 +
1691679174.2262342-CDS-H-elongata_contig139250:497..9291691679174.2262342-CDS-H-elongata_contig139250:497..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139250 498..929 +
1622929826.6555583-CDS-H-elongata_contig139250:1038..12691622929826.6555583-CDS-H-elongata_contig139250:1038..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139250 1039..1269 +
1691679174.233686-CDS-H-elongata_contig139250:1038..12691691679174.233686-CDS-H-elongata_contig139250:1038..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139250 1039..1269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139250.2736.1

>prot_H-elongata_contig139250.2736.1 ID=prot_H-elongata_contig139250.2736.1|Name=mRNA_H-elongata_contig139250.2736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
MKHIGDASYYLGYHITRDRNAGTLNFDQHQYIQTVAECFGVTKTSIVPSA
AGGKALSKLDSPQTDAGVEEMCQIPYREIVGALMWAATMTRPKISFAPHQ
LAKFNDYPGPTHWRAAQKGLQYLWRTRDLGITYGGEPGGDQAIGVMAVAS
SESEYVALAEMVNELRFLRQVKAFITSQIDVAITIRESRWRKTASAVDER
GRWILSITLSVTRPMGGWFT*
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mRNA from alignment at H-elongata_contig139250:66..1388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139250.2736.1 ID=mRNA_H-elongata_contig139250.2736.1|Name=mRNA_H-elongata_contig139250.2736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1323bp|location=Sequence derived from alignment at H-elongata_contig139250:66..1388+ (Himanthalia elongata Himel1 dioecious)
ATAAACTACGAGGAATCCTCCTCTCCGACTCCTGCGCAGAGCAGCATTGG TATAGTACTCCGCATTATCGCCGCTCTCGGCTGGGAGGCGCGGCAGCTGG ATGTCGATATGGCCTACCTGGAGGCCGACGTGAAGGAGGAGATCTACGTT GAGCTCCCGGAGGCATACCGTGGCTCCAGGAAGCAATTCGACCTGCTAAG AAAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAAAATAAGT TTGGGATTGATCTCGACGCCAAGGGTTTCCACAGATCTCATGCTGACCCA TGCGTTTTCCGGCGGATTTTCCACGGGACAGTGGTAGTTGTCATCGTGGT TTACGTCGACGACCTGCTGGTTGCTAGTGTAACGAAACGTGACGAGAAGC AAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATGAAACATATAGGGGAT GCTTCATATTACCTGGGATACCACATCACGCGGGACCGGAACGCCGGGAC ACTGAATTTCGACCAGCATCAGTACATACAGACTGTGGCGGAATGTTTTG GCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGGAAAAGCTCTT TCAAAATTAGACAGCCCGCAAACGGACGCAGGGGTTGAAGAAATGTGCCA GATTCCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGA CCAGGCCCAAAATTTCATTCGCTCCGCACCAACTGGCGAAATTCAACGAC TACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGGGCTGCAATATTT ATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACCGGGGGGGG ACCAAGCTATCGGCGTGGAACGACGCAGACTACGGCACCTGCCCGGACAC GTGTCATTCAGTGTCGGGGGGGGCGGTGATGATTGCTGGCGGGGCCATCA GTTGGTTGGCACGAGTGTAAAAGGTAATGGCGGTGGCGTCGTCCGAATCG GAATACGTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTTCTACGACA GGTCAAGGCGTTCATAACCTCCCAAATCGACGTTGCCATCACGATACGCG AATCAAGATGGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGAAGGTGG ATATTAAGCATCACATTATCCGTGACGCGGCCGATGGGAGGGTGGTTCAC ATAGAATACGTTCGGTCCGGGGAACATCACGCCGACATCTTCACGAAGAC CGCAGACGTGAAGACATTTGAAGAGCACGCAAACTTTCTTCTGAATCCCT CCGTGAAGGTTAGCGGGGGCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig139250:66..1388+

>mRNA_H-elongata_contig139250.2736.1 ID=mRNA_H-elongata_contig139250.2736.1|Name=mRNA_H-elongata_contig139250.2736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig139250:66..1388+ (Himanthalia elongata Himel1 dioecious)
ATGAAACATATAGGGGATGCTTCATATTACCTGGGATACCACATCACGCG
GGACCGGAACGCCGGGACACTGAATTTCGACCAGCATCAGTACATACAGA
CTGTGGCGGAATGTTTTGGCGTGACGAAGACCAGCATCGTCCCGTCTGCG
GCAGGAGGAAAAGCTCTTTCAAAATTAGACAGCCCGCAAACGGACGCAGG
GGTTGAAGAAATGTGCCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAA
TGTGGGCAGCGACGATGACCAGGCCCAAAATTTCATTCGCTCCGCACCAA
CTGGCGAAATTCAACGACTACCCGGGACCGACACACTGGAGGGCAGCCCA
GAAAGGGCTGCAATATTTATGGCGCACTCGGGACCTCGGGATCACCTACG
GAGGGGAACCGGGGGGGGACCAAGCTATCGGCATGAAACATATAGGGGAT
GCTTCATATTACCTGGGATACCACATCACGCGGGACCGGAACGCCGGGAC
ACTGAATTTCGACCAGCATCAGTACATACAGACTGTGGCGGAATGTTTTG
GCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGGAAAAGCTCTT
TCAAAATTAGACAGCCCGCAAACGGACGCAGGGGTTGAAGAAATGTGCCA
GATTCCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGA
CCAGGCCCAAAATTTCATTCGCTCCGCACCAACTGGCGAAATTCAACGAC
TACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGGGCTGCAATATTT
ATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACCGGGGGGGG
ACCAAGCTATCGGCGTAATGGCGGTGGCGTCGTCCGAATCGGAATACGTC
GCGCTGGCTGAGATGGTAAACGAGTTGCGTTTTCTACGACAGGTCAAGGC
GTTCATAACCTCCCAAATCGACGTTGCCATCACGATACGCGAATCAAGAT
GGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGAAGGTGGATATTAAGC
ATCACATTATCCGTGACGCGGCCGATGGGAGGGTGGTTCACATAGGTAAT
GGCGGTGGCGTCGTCCGAATCGGAATACGTCGCGCTGGCTGAGATGGTAA
ACGAGTTGCGTTTTCTACGACAGGTCAAGGCGTTCATAACCTCCCAAATC
GACGTTGCCATCACGATACGCGAATCAAGATGGCGAAAAACCGCTTCAGC
AGTCGACGAACGAGGAAGGTGGATATTAAGCATCACATTATCCGTGACGC
GGCCGATGGGAGGGTGGTTCACATAG
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