mRNA_H-elongata_contig139224.2733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139224.2733.1
Unique NamemRNA_H-elongata_contig139224.2733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.780e-25
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 FSLKTWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F   T   F  +ALLLALGIK++RLGAAAAMSWVLKDALGK GRILWASKMGRRFDSDAKRWRFRS
Sbjct:  206 FVAGTINVFGTQALLLALGIKAKRLGAAAAMSWVLKDALGKFGRILWASKMGRRFDSDAKRWRFRS 271          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A835YQZ5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.960e-22
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 FSLKTWGTFPR-----------KALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F+   W  F R           +ALLLALGIKSR +GAAAA+SWVLKDALGK  RILWASKMGRRFDSDAKRWR+RS
Sbjct:  170 FNFTRWRIFQRFVAATVSVLGTQALLLALGIKSRSIGAAAAISWVLKDALGKFVRILWASKMGRRFDSDAKRWRYRS 246          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A0G4FQL3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQL3_VITBC)

HSP 1 Score: 97.1 bits (240), Expect = 6.390e-22
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   13 TWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            T   F  +ALLLALGIK+RRLG AAA+SWVLKDALGK GR LWASKMGR FD DAKRWRFRS
Sbjct:  305 TANVFGTQALLLALGIKARRLGQAAAVSWVLKDALGKIGRFLWASKMGRSFDVDAKRWRFRS 366          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A0G4G9L5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9L5_9ALVE)

HSP 1 Score: 95.1 bits (235), Expect = 3.030e-21
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 FSLKTWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F   T   F  +ALLLALGIKSR LGAAAA+SWV KDA GK GRILWAS+MGR FD DAK+WRFRS
Sbjct:  381 FLSATVNVFGTQALLLALGIKSRNLGAAAALSWVFKDAFGKGGRILWASRMGRAFDGDAKKWRFRS 446          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: W7TAG4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.360e-19
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   13 TWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            T   F  +ALLLALG+K+ R+G  A  +W+ KDA GK GRI+WASKMGRRFDSDAKRWRFRS
Sbjct:  273 TVSVFGTRALLLALGLKTERVGLTATFNWIQKDAFGKFGRIMWASKMGRRFDSDAKRWRFRS 334          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: M2Y329_GALSU (Glutamate N-acetyltransferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y329_GALSU)

HSP 1 Score: 87.8 bits (216), Expect = 1.130e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   13 TWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            T G F  +ALLLALGIK+ R+G AAA SWVLKD LG+ G+++WAS+MGR FD+D KRWRFRS
Sbjct:  447 TVGVFGTQALLLALGIKAGRIGRAAATSWVLKDGLGRLGKMVWASQMGRDFDADPKRWRFRS 508          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A7S2WMF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMF6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-18
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 FSLKTWGTFPRKALLLALGIKSR-RLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F   T   F  +A+LLALGIK++  LGAAAA SWVLKDALGK GRI+WA +MGR+FDS+AKRWRFRS
Sbjct:  147 FVSATINVFGVQAMLLALGIKTQGALGAAAATSWVLKDALGKFGRIMWAGRMGRQFDSNAKRWRFRS 213          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A1X6NWJ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWJ7_PORUM)

HSP 1 Score: 87.0 bits (214), Expect = 2.020e-18
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   13 TWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            T G F  +ALLLALGIKS RLG AAA+SWVLKD LG+ G++LWA  +GR FD D KRWRFRS
Sbjct:  138 TVGVFGTQALLLALGIKSGRLGQAAAISWVLKDGLGRVGKMLWAGSVGRDFDVDPKRWRFRS 199          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A7S2BSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSH1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.460e-17
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   25 FPRKALLLALGIKSR-RLGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F  +A+LLALGI+++  LG AAA+SWVLKDALGK  RI WAS+M RRFDSDAKRWRFRS
Sbjct:  187 FGTQAMLLALGIRTQGALGTAAAVSWVLKDALGKLCRIFWASRMSRRFDSDAKRWRFRS 245          
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Match: A0A7S1ZFK0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFK0_TRICV)

HSP 1 Score: 83.2 bits (204), Expect = 3.960e-17
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1
Query:   25 FPRKALLLALGIKSRR-LGAAAAMSWVLKDALGKCGRILWASKMGRRFDSDAKRWRFRS 198
            F  ++LLL LGIK+R  LG +AA++WVLKDALGK  R++WAS+MGR+FDSDAKRWRFRS
Sbjct:  153 FGTQSLLLGLGIKNRNTLGLSAALNWVLKDALGKMVRMVWASRMGRKFDSDAKRWRFRS 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139224.2733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT88_ECTSI6.780e-2581.82Putative glutamate/ornithine acetyltransferase (IS... [more]
A0A835YQZ5_9STRA2.960e-2267.53Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A0G4FQL3_VITBC6.390e-2279.03Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4G9L5_9ALVE3.030e-2172.73Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
W7TAG4_9STRA2.360e-1967.74Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
M2Y329_GALSU1.130e-1867.74Glutamate N-acetyltransferase n=1 Tax=Galdieria su... [more]
A0A7S2WMF6_9STRA1.470e-1868.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1X6NWJ7_PORUM2.020e-1869.35Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2BSH1_9STRA2.460e-1772.88Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1ZFK0_TRICV3.960e-1769.49Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139224contigH-elongata_contig139224:1052..1255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D7FT88
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.3922675-CDS-H-elongata_contig139224:1051..12551622929826.3922675-CDS-H-elongata_contig139224:1051..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139224 1052..1255 -
1691679174.1438084-CDS-H-elongata_contig139224:1051..12551691679174.1438084-CDS-H-elongata_contig139224:1051..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139224 1052..1255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139224.2733.1prot_H-elongata_contig139224.2733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139224 1052..1255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139224.2733.1

>prot_H-elongata_contig139224.2733.1 ID=prot_H-elongata_contig139224.2733.1|Name=mRNA_H-elongata_contig139224.2733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
FSLKTWGTFPRKALLLALGIKSRRLGAAAAMSWVLKDALGKCGRILWASK
MGRRFDSDAKRWRFRSR*
back to top

mRNA from alignment at H-elongata_contig139224:1052..1255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139224.2733.1 ID=mRNA_H-elongata_contig139224.2733.1|Name=mRNA_H-elongata_contig139224.2733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig139224:1052..1255- (Himanthalia elongata Himel1 dioecious)
TTTTCTCTCAAAACTTGGGGTACGTTTCCTCGGAAGGCGCTGCTGCTGGC GCTGGGCATCAAGTCGCGTCGACTAGGGGCCGCGGCGGCGATGAGCTGGG TGCTCAAGGATGCTCTAGGCAAGTGCGGCCGCATCCTGTGGGCCTCGAAG ATGGGCCGTCGGTTCGATTCCGACGCCAAGCGGTGGCGATTTCGAAGCAG GTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig139224:1052..1255-

>mRNA_H-elongata_contig139224.2733.1 ID=mRNA_H-elongata_contig139224.2733.1|Name=mRNA_H-elongata_contig139224.2733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig139224:1052..1255- (Himanthalia elongata Himel1 dioecious)
TTTTCTCTCAAAACTTGGGGTACGTTTCCTCGGAAGGCGCTGCTGCTGGC
GCTGGGCATCAAGTCGCGTCGACTAGGGGCCGCGGCGGCGATGAGCTGGG
TGCTCAAGGATGCTCTAGGCAAGTGCGGCCGCATCCTGTGGGCCTCGAAG
ATGGGCCGTCGGTTCGATTCCGACGCCAAGCGGTGGCGATTTCGAAGCAG
GTGATTTTCTCTCAAAACTTGGGGTACGTTTCCTCGGAAGGCGCTGCTGC
TGGCGCTGGGCATCAAGTCGCGTCGACTAGGGGCCGCGGCGGCGATGAGC
TGGGTGCTCAAGGATGCTCTAGGCAAGTGCGGCCGCATCCTGTGGGCCTC
GAAGATGGGCCGTCGGTTCGATTCCGACGCCAAGCGGTGGCGATTTCGAA
GCAGGTGA
back to top