mRNA_H-elongata_contig139111.2721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139111.2721.1
Unique NamemRNA_H-elongata_contig139111.2721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A6H5JR35_9PHAE (Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR35_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.590e-33
Identity = 62/82 (75.61%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 QEDGKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESFESSTDMYLAILRKTPYQASETVRYLRGKVS 246
            +E GKVVISHPLGR FVSRLKAVD TVVPH+LPE+  L+RLVQFLPL ++SFES  ++YLA+LRKTP++AS TVRYLRGKVS
Sbjct:  246 EEGGKVVISHPLGRDFVSRLKAVDDTVVPHELPEQDALERLVQFLPLVMDSFESGPELYLAVLRKTPHRASGTVRYLRGKVS 327
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A7S3Q9G1_9STRA (Riboflavin kinase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9G1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.740e-14
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QEDGKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESF----------ESSTDMYLAILRKTPYQASETVRYLRGKV 243
            +EDG  +ISHPLG GFV +LK+ + + VP+ LP + + D L+QF PLR E+F          ES+T +Y A  +K P+  +  V  LRGKV
Sbjct:  258 KEDGCFIISHPLGAGFVEKLKSENPSTVPNLLPSQTEFDELLQFQPLRRENFMEEAQLSENAESATALYFASAKKIPHLLTREVLRLRGKV 348
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: I0Z1F9_COCSC (Riboflavin kinase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1F9_COCSC)

HSP 1 Score: 70.5 bits (171), Expect = 2.130e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   10 GKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESFESSTDMYLAILR 192
            G +VISHPLGR +  RL+  D+ +VPH LP+R  L+RL+  LPLR+ SF+   D+YL +L+
Sbjct:  152 GHIVISHPLGRAWHERLREGDAEIVPHALPDRPTLERLITDLPLRLRSFQDDPDLYLTLLQ 212
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A7S2WP52_9STRA (Riboflavin kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP52_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.470e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   10 GKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESFE-------------SSTDMYLAILRKTPYQASETVRYLRGKVS 246
            G+ +ISHPLG   VS L+  D+ VVPH+LP R  LDRLVQ+ P +V   E             SS+  YLA LR+  +Q       LRG+V+
Sbjct:  230 GECIISHPLGEPCVSALRERDAAVVPHELPTRRGLDRLVQYQPFQVLQVEDVRGDPEDPFNADSSSGFYLARLRRVAHQTLHQRLCLRGQVA 321
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A8J6C5Q3_DIALT (Riboflavin kinase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5Q3_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 4.350e-9
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:   10 GKVVISHPLGRGFVSRLKAVDSTVVPHDLP-ERGDLDRLVQFLPLRVESFESSTD----------MYLAILRKTPYQASETVRYLRGKVS 246
            G+VVI+HPLGR FVSRL+A D+ VVPH+LP +   L  L + LPLR+ + +               Y A+L +   +    V  LRG+VS
Sbjct:  232 GRVVIAHPLGRAFVSRLRAEDAAVVPHELPADARALAELAEGLPLRLVALDDEAPADGAGGGGDGFYCALLERWLPRPLPRVMLLRGEVS 321
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A7V8NLW2_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Candidatus Acidoferrum panamensis TaxID=2741543 RepID=A0A7V8NLW2_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 6.970e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 GKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESFESSTDMYLAILRKT 198
            G++++SHP GRGFV +L+A     +   LP RG+   LVQ L L+V ++     +YL + RKT
Sbjct:  156 GRLIVSHPEGRGFVEKLRAAGDLFI-ESLPGRGEFQALVQPLGLKVVTYWDEPKLYLMVARKT 217
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: UPI001E5912C4 (class I SAM-dependent methyltransferase n=1 Tax=Sansalvadorimonas verongulae TaxID=2172824 RepID=UPI001E5912C4)

HSP 1 Score: 52.0 bits (123), Expect = 6.050e-6
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 GKVVISHPLGRGFVSRLKAVDSTVVPHDLP-ERGDLDRLVQFLPLRVESFESSTDMYLAILRK 195
            GK++I+HPLGRGFV  L   D ++VP  LP  R +  +L++   L ++S  +  ++Y+ I RK
Sbjct:  182 GKLLITHPLGRGFVQTLNRKDPSIVPGTLPPNRQEAVKLIEDSGLEIDSLLNEPELYILIYRK 244
[Close]
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Match: A0A6G9ZAQ3_9NOCA (Methyltransferase domain-containing protein n=2 Tax=Nocardia terpenica TaxID=455432 RepID=A0A6G9ZAQ3_9NOCA)

HSP 1 Score: 51.2 bits (121), Expect = 9.030e-6
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:    7 DGKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVESFESSTDMYLAILRK 195
            +G+VVISHPLGR FV  L A    +  H LP    L  L +   L +E      ++Y+A+LR+
Sbjct:  143 EGRVVISHPLGRQFVEGLHAAQPEITRHTLPIDESLTTLAEQSGLALEHVRDEAELYIAVLRR 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139111.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JR35_9PHAE4.590e-3375.61Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3Q9G1_9STRA5.740e-1443.96Riboflavin kinase n=1 Tax=Chaetoceros debilis TaxI... [more]
I0Z1F9_COCSC2.130e-1250.82Riboflavin kinase n=1 Tax=Coccomyxa subellipsoidea... [more]
A0A7S2WP52_9STRA5.470e-1142.39Riboflavin kinase n=1 Tax=Rhizochromulina marina T... [more]
A0A8J6C5Q3_DIALT4.350e-941.11Riboflavin kinase n=1 Tax=Diacronema lutheri TaxID... [more]
A0A7V8NLW2_9BACT6.970e-741.27Class I SAM-dependent methyltransferase n=1 Tax=Ca... [more]
UPI001E5912C46.050e-639.68class I SAM-dependent methyltransferase n=1 Tax=Sa... [more]
A0A6G9ZAQ3_9NOCA9.030e-639.68Methyltransferase domain-containing protein n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139111contigH-elongata_contig139111:350..1021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue8.4e-27
Seed eggNOG ortholog2880.D8LGN9
Preferred nameRFK
KEGG rclassRC00002,RC00017
KEGG koko:K00861
KEGG ReactionR00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009893,GO:0009987,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0033860,GO:0033864,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050790,GO:0051186,GO:0051188,GO:0051341,GO:0051353,GO:0055086,GO:0065007,GO:0065009,GO:0071704,GO:0072593,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.riboflavin kinase activity
EggNOG OGsCOG0196@1,KOG3110@2759
EC2.7.1.26
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.2610025-CDS-H-elongata_contig139111:349..4781622929825.2610025-CDS-H-elongata_contig139111:349..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139111 350..478 +
1691679173.7700336-CDS-H-elongata_contig139111:349..4781691679173.7700336-CDS-H-elongata_contig139111:349..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139111 350..478 +
1622929825.2838564-CDS-H-elongata_contig139111:904..10211622929825.2838564-CDS-H-elongata_contig139111:904..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139111 905..1021 +
1691679173.7942257-CDS-H-elongata_contig139111:904..10211691679173.7942257-CDS-H-elongata_contig139111:904..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139111 905..1021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139111.2721.1prot_H-elongata_contig139111.2721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139111 350..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139111.2721.1

>prot_H-elongata_contig139111.2721.1 ID=prot_H-elongata_contig139111.2721.1|Name=mRNA_H-elongata_contig139111.2721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
QEDGKVVISHPLGRGFVSRLKAVDSTVVPHDLPERGDLDRLVQFLPLRVE
SFESSTDMYLAILRKTPYQASETVRYLRGKVS
back to top

mRNA from alignment at H-elongata_contig139111:350..1021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139111.2721.1 ID=mRNA_H-elongata_contig139111.2721.1|Name=mRNA_H-elongata_contig139111.2721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig139111:350..1021+ (Himanthalia elongata Himel1 dioecious)
CAGGAGGACGGGAAGGTGGTCATATCGCACCCGCTTGGACGAGGTTTTGT
TAGCCGGTTGAAGGCCGTGGACTCTACCGTGGTTCCGCACGACCTTCCCG
AGAGGGGTGACCTCGATCGACTTGTGCAGGTGACGAGATGCTGCCTTCAG
TAGCCCTCTCTTGTGTTGACTATGACAGACTATGGTAGACTATGGTAGGC
TAGAGTAGAAACTAGACTGGCTTGGGTAGTACATAGATTCGAGGCAGGCG
ATGCTTCTCTTGTAGTCCTGACTCGAGACAGGCGTGCTGCATCGTGTTCA
TTGATTGTTGATTGAGACTTGGTTTGAGTGTTGATTGATTTTTCATCAGT
CTCACCAAAGGTGCTGTTGAGTACTTGACACAATGGTTGATTGGCTAACT
GACATAACTGACTGGATTACTAACTGAAAATTATAGTATAGCGTTGAGGG
GAGCTCAATTGCTTGAATTCAAATTTCAAAAGTCAAGTCAGTCAGTGTGG
GTCACCTTCGTCCTTTTTTTTTTTGCTTTGTTTGTTTTCCACGGCGGGTC
GAAAGTTCCTACCGTTACGCGTGGAGTCGTTCGAGTCCAGCACAGACATG
TACCTGGCGATCCTTCGAAAAACGCCTTACCAAGCTTCCGAAACCGTAAG
GTATCTCAGGGGAAAGGTGAGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig139111:350..1021+

>mRNA_H-elongata_contig139111.2721.1 ID=mRNA_H-elongata_contig139111.2721.1|Name=mRNA_H-elongata_contig139111.2721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig139111:350..1021+ (Himanthalia elongata Himel1 dioecious)
CAGGAGGACGGGAAGGTGGTCATATCGCACCCGCTTGGACGAGGTTTTGT
TAGCCGGTTGAAGGCCGTGGACTCTACCGTGGTTCCGCACGACCTTCCCG
AGAGGGGTGACCTCGATCGACTTGTGCAGCAGGAGGACGGGAAGGTGGTC
ATATCGCACCCGCTTGGACGAGGTTTTGTTAGCCGGTTGAAGGCCGTGGA
CTCTACCGTGGTTCCGCACGACCTTCCCGAGAGGGGTGACCTCGATCGAC
TTGTGCAGTTCCTACCGTTACGCGTGGAGTCGTTCGAGTCCAGCACAGAC
ATGTACCTGGCGATCCTTCGAAAAACGCCTTACCAAGCTTCCGAAACCGT
AAGGTATCTCAGGGGAAAGGTGAGTTTCCTACCGTTACGCGTGGAGTCGT
TCGAGTCCAGCACAGACATGTACCTGGCGATCCTTCGAAAAACGCCTTAC
CAAGCTTCCGAAACCGTAAGGTATCTCAGGGGAAAGGTGAGT
back to top