mRNA_H-elongata_contig138975.2715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138975.2715.1
Unique NamemRNA_H-elongata_contig138975.2715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: D7FNK3_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.400e-29
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   85 QVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFAD-VPDVFQ 282
            ++G KSRFVGY D  +C+VE+LVLQHLSQ+EEGSWAGWHCEGSP+R LWALLMWDVIF+  V DVFQ
Sbjct:   11 EIGAKSRFVGYGDGAACTVEALVLQHLSQREEGSWAGWHCEGSPLRSLWALLMWDVIFSPGVADVFQ 77          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A6H5L3R1_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.810e-29
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:   85 QVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFAD-VPDVFQ 282
            ++GVKSRFVGY D  +C+VESLVLQHLSQ+EEGSWAGWHCEGSP+R LWALLMWDVIF+  V DVFQ
Sbjct: 1172 EIGVKSRFVGYGDGAACTVESLVLQHLSQREEGSWAGWHCEGSPLRALWALLMWDVIFSPGVADVFQ 1238          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A388LRU2_CHABU (Fanconi-associated nuclease (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LRU2_CHABU)

HSP 1 Score: 80.5 bits (197), Expect = 5.150e-16
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   88 VGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            VG+KSRF GYD   SC+VE L LQH +++E G W G H E      L+ +LMWDV+FADVPDVF+
Sbjct:   12 VGMKSRFYGYDG-CSCTVEELALQHYAKEEYGQWVGVHSENGIWNTLFGILMWDVLFADVPDVFR 75          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A2V0NM20_9CHLO (Fanconi-associated nuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NM20_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 7.070e-16
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 WSVIRWATVSRSPKGPNRISFNPIQSITQVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            W +  WA  + +     R+   P+     +G ++R+ GYD S   +VE L LQH +++ EG W G H EG     L+ L+MWD++F+DVP VFQ
Sbjct:  857 WKLPAWAAAALAEPAERRVVGRPLAG--SIGSRNRYYGYDGSQQVNVEELALQHYAREAEGGWRGIHTEGGIWATLFGLVMWDILFSDVPGVFQ 948          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A9SF58_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SF58_PHYPA)

HSP 1 Score: 81.3 bits (199), Expect = 9.480e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   88 VGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            +G+KSRF G+D    C VE L LQH + +E G W G H EG     L+ LLMWD+IFADVPDVFQ
Sbjct:  563 IGMKSRFYGFDGQ-QCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFADVPDVFQ 626          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A2K1KI61_PHYPA (Fanconi-associated nuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI61_PHYPA)

HSP 1 Score: 81.3 bits (199), Expect = 9.680e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   88 VGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            +G+KSRF G+D    C VE L LQH + +E G W G H EG     L+ LLMWD+IFADVPDVFQ
Sbjct:  887 IGMKSRFYGFDGQ-QCGVEELALQHYASEEGGGWQGMHSEGGIWMTLFGLLMWDIIFADVPDVFQ 950          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A2R6XQH5_MARPO (Fanconi-associated nuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQH5_MARPO)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-15
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   52 RISFNPIQSITQVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            +I   P+  +T  G KSRF GYD    C VE L LQ+ + +E G+W G HCEG     L+ LLMWDV+FA+VPDVFQ
Sbjct:  969 QIRGRPLNCVT--GKKSRFYGYDGE-QCGVEELALQYYASEEGGAWQGVHCEGGVWLTLFGLLMWDVLFAEVPDVFQ 1042          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A5J4XL27_9CHLO (Fanconi-associated nuclease n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XL27_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.440e-15
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 1
Query:    1 WSVIRWATVSRSPKGPNRISFNPIQSITQVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQVIY 291
            W    WA+V+       RI   P+ S+  +G+KSRFVG +    CSVE L LQ+ + +  G+W G H EG     L+ LLMWDVIF  VP+VFQ  +
Sbjct:  743 WKRPSWASVAMREPLEVRIEGQPLNSV--LGIKSRFVG-NGGDECSVEELALQYYAAEAGGNWTGTHAEGGIWATLFGLLMWDVIFMGVPEVFQTAF 836          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: A0A2P6TYW3_CHLSO (Fanconi-associated nuclease n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYW3_CHLSO)

HSP 1 Score: 79.7 bits (195), Expect = 3.410e-15
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 WSVIRWATVSRSPKGPNRISFNPIQSITQVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            W V  WA  +       RI   P+ + T  G KSRF G+DD+  C+VE L LQ+ + ++ G W G H EG     LW LL+WDV+F  VPDVF+
Sbjct: 1424 WVVPPWAKAANWEPPEVRIVGWPLNNTT--GTKSRFYGFDDA-QCTVEELALQYYATEDGGGWQGVHSEGGIWATLWGLLLWDVLFMPVPDVFR 1514          
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Match: E1ZM93_CHLVA (Fanconi-associated nuclease n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZM93_CHLVA)

HSP 1 Score: 78.6 bits (192), Expect = 8.490e-15
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    1 WSVIRWATVSRSPKGPNRISFNPIQSITQVGVKSRFVGYDDSTSCSVESLVLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQ 282
            W    W   ++      RI   P+   T  G KSRF G D+   C VE L LQH + +E G W G HCEG     L+ LL+WDV+F  VPDVF+
Sbjct:  752 WKTPAWKKEAQREPPVVRIQGRPLNRTT--GAKSRFYGLDEE-QCGVEELALQHYATEEGGGWQGVHCEGGVWAMLFGLLLWDVLFMPVPDVFR 842          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138975.2715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNK3_ECTSI6.400e-2976.12Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5L3R1_9PHAE7.810e-2979.10Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A388LRU2_CHABU5.150e-1656.92Fanconi-associated nuclease (Fragment) n=1 Tax=Cha... [more]
A0A2V0NM20_9CHLO7.070e-1638.30Fanconi-associated nuclease n=1 Tax=Raphidocelis s... [more]
A9SF58_PHYPA9.480e-1656.92Fanconi-associated nuclease n=1 Tax=Physcomitrium ... [more]
A0A2K1KI61_PHYPA9.680e-1656.92Fanconi-associated nuclease n=1 Tax=Physcomitrium ... [more]
A0A2R6XQH5_MARPO1.330e-1551.95Fanconi-associated nuclease n=2 Tax=Marchantia pol... [more]
A0A5J4XL27_9CHLO2.440e-1543.30Fanconi-associated nuclease n=1 Tax=Trebouxia sp. ... [more]
A0A2P6TYW3_CHLSO3.410e-1543.62Fanconi-associated nuclease n=1 Tax=Chlorella soro... [more]
E1ZM93_CHLVA8.490e-1542.55Fanconi-associated nuclease n=1 Tax=Chlorella vari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138975contigH-elongata_contig138975:314..625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue8.5e-24
Seed eggNOG ortholog2880.D7FNK3
KEGG koko:K15363
KEGG Pathwayko03460,map03460
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
EC3.1.4.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categorymitochondrion
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.6500304-CDS-H-elongata_contig138975:313..6251622929824.6500304-CDS-H-elongata_contig138975:313..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138975 314..625 -
1691679173.550062-CDS-H-elongata_contig138975:313..6251691679173.550062-CDS-H-elongata_contig138975:313..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138975 314..625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138975.2715.1prot_H-elongata_contig138975.2715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138975 314..625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138975.2715.1

>prot_H-elongata_contig138975.2715.1 ID=prot_H-elongata_contig138975.2715.1|Name=mRNA_H-elongata_contig138975.2715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
WSVIRWATVSRSPKGPNRISFNPIQSITQVGVKSRFVGYDDSTSCSVESL
VLQHLSQQEEGSWAGWHCEGSPVRGLWALLMWDVIFADVPDVFQVIYPAL
MRE*
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mRNA from alignment at H-elongata_contig138975:314..625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138975.2715.1 ID=mRNA_H-elongata_contig138975.2715.1|Name=mRNA_H-elongata_contig138975.2715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig138975:314..625- (Himanthalia elongata Himel1 dioecious)
TGGAGCGTAATCAGGTGGGCGACGGTTTCGCGAAGCCCGAAAGGCCCGAA TCGAATCAGTTTTAATCCAATCCAATCAATCACGCAGGTTGGGGTTAAGA GCAGATTCGTTGGGTACGACGACAGCACATCGTGTTCGGTGGAGAGCCTG GTGCTACAGCACCTCTCTCAGCAAGAGGAAGGATCGTGGGCCGGGTGGCA CTGTGAGGGGTCGCCGGTGCGAGGACTCTGGGCGCTGTTAATGTGGGATG TTATTTTCGCCGACGTTCCAGACGTTTTTCAGGTGATTTACCCCGCTTTA ATGAGGGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig138975:314..625-

>mRNA_H-elongata_contig138975.2715.1 ID=mRNA_H-elongata_contig138975.2715.1|Name=mRNA_H-elongata_contig138975.2715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig138975:314..625- (Himanthalia elongata Himel1 dioecious)
TGGAGCGTAATCAGGTGGGCGACGGTTTCGCGAAGCCCGAAAGGCCCGAA
TCGAATCAGTTTTAATCCAATCCAATCAATCACGCAGGTTGGGGTTAAGA
GCAGATTCGTTGGGTACGACGACAGCACATCGTGTTCGGTGGAGAGCCTG
GTGCTACAGCACCTCTCTCAGCAAGAGGAAGGATCGTGGGCCGGGTGGCA
CTGTGAGGGGTCGCCGGTGCGAGGACTCTGGGCGCTGTTAATGTGGGATG
TTATTTTCGCCGACGTTCCAGACGTTTTTCAGGTGATTTACCCCGCTTTA
ATGAGGGAATGATGGAGCGTAATCAGGTGGGCGACGGTTTCGCGAAGCCC
GAAAGGCCCGAATCGAATCAGTTTTAATCCAATCCAATCAATCACGCAGG
TTGGGGTTAAGAGCAGATTCGTTGGGTACGACGACAGCACATCGTGTTCG
GTGGAGAGCCTGGTGCTACAGCACCTCTCTCAGCAAGAGGAAGGATCGTG
GGCCGGGTGGCACTGTGAGGGGTCGCCGGTGCGAGGACTCTGGGCGCTGT
TAATGTGGGATGTTATTTTCGCCGACGTTCCAGACGTTTTTCAGGTGATT
TACCCCGCTTTAATGAGGGAATGA
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