mRNA_H-elongata_contig138898.2711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138898.2711.1
Unique NamemRNA_H-elongata_contig138898.2711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            RQ +I  FN    K+  VFLLST+AGNMGINLVAANRV+LMDTSWNPANDLQAMFR
Sbjct: 2550 RQQLISRFNDPERKSTGVFLLSTKAGNMGINLVAANRVVLMDTSWNPANDLQAMFR 2605
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.220e-18
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            RQ +I  FN    K+  VFLLST+AGNMGINLVAANRV+LMDTSWNPANDLQAMFR
Sbjct: 2652 RQQLISRFNDPDRKSTGVFLLSTKAGNMGINLVAANRVVLMDTSWNPANDLQAMFR 2707
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A7S0Z154_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z154_9CRYP)

HSP 1 Score: 77.8 bits (190), Expect = 2.340e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            RQ  I+ FN   N +AR+FL+STRAG++G+NLVAANRV+LMD SWNP +DLQA+FR
Sbjct:   38 RQSDIDNFNHIDNVSARLFLVSTRAGSLGVNLVAANRVVLMDVSWNPTHDLQAIFR 93
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A1W4UEB2_DROFC (transcriptional regulator ATRX homolog n=3 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4UEB2_DROFC)

HSP 1 Score: 76.3 bits (186), Expect = 1.260e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   10 MIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            MI+ FN   NK ARVFL+S+RAG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct:    1 MIKRFNSEANKRARVFLISSRAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 53
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A811UH95_CERCA ((Mediterranean fruit fly) hypothetical protein n=2 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811UH95_CERCA)

HSP 1 Score: 76.6 bits (187), Expect = 1.370e-16
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            R  MIE+FN   NK ARVFL+S+RAG  GINL  ANRVI++DTSWNP+ND Q +FR
Sbjct:   43 RHEMIEQFNSISNKRARVFLISSRAGGQGINLTGANRVIILDTSWNPSNDQQNIFR 98
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A0L0BQA0_LUCCU (Putative transcriptional regulator ATRX n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0BQA0_LUCCU)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-16
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            R  MI EFN   NKTARVFL+S +AG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct:  100 RHAMINEFNNVENKTARVFLISAKAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 155
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: UPI001F06C71C (transcriptional regulator ATRX-like isoform X1 n=3 Tax=Lucilia TaxID=7374 RepID=UPI001F06C71C)

HSP 1 Score: 79.3 bits (194), Expect = 6.450e-16
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            R  MI EFN   NKTARVFL+S +AG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct: 1613 RHAMINEFNNVENKTARVFLISAKAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 1668
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A1I8PAA2_STOCA (Uncharacterized protein n=2 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PAA2_STOCA)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-15
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 RQIMIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            R  MI EFN   NKTARVFL+S +AG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct: 1667 RHAMINEFNNVLNKTARVFLISAKAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 1722
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BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: B4G7A9_DROPE (GL18989 n=1 Tax=Drosophila persimilis TaxID=7234 RepID=B4G7A9_DROPE)

HSP 1 Score: 75.1 bits (183), Expect = 1.350e-15
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   10 MIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            MI+ FN   NK ARVFL+S RAG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct:    1 MIKRFNSEVNKRARVFLISARAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 53
[Close]
BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Match: A0A8B7L5P5_DROEL (transcriptional regulator ATRX homolog n=4 Tax=melanogaster group TaxID=32346 RepID=A0A8B7L5P5_DROEL)

HSP 1 Score: 73.6 bits (179), Expect = 1.450e-15
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   10 MIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQAMFR 168
            MI+ FN   N  ARVFL+S+RAG  GINL+ ANRVI++DTSWNP+ND Q +FR
Sbjct:    1 MIKRFNSESNGRARVFLISSRAGGQGINLIGANRVIILDTSWNPSNDQQNIFR 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138898.2711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW3_ECTSI1.720e-1876.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE3.220e-1876.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0Z154_9CRYP2.340e-1766.07Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1W4UEB2_DROFC1.260e-1666.04transcriptional regulator ATRX homolog n=3 Tax=Dro... [more]
A0A811UH95_CERCA1.370e-1666.07(Mediterranean fruit fly) hypothetical protein n=2... [more]
A0A0L0BQA0_LUCCU6.430e-1666.07Putative transcriptional regulator ATRX n=1 Tax=Lu... [more]
UPI001F06C71C6.450e-1666.07transcriptional regulator ATRX-like isoform X1 n=3... [more]
A0A1I8PAA2_STOCA1.200e-1566.07Uncharacterized protein n=2 Tax=Stomoxys calcitran... [more]
B4G7A9_DROPE1.350e-1566.04GL18989 n=1 Tax=Drosophila persimilis TaxID=7234 R... [more]
A0A8B7L5P5_DROEL1.450e-1564.15transcriptional regulator ATRX homolog n=4 Tax=mel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138898contigH-elongata_contig138898:560..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.2589018-UTR-H-elongata_contig138898:559..5681622929824.2589018-UTR-H-elongata_contig138898:559..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138898 560..568 +
1691679173.338378-UTR-H-elongata_contig138898:559..5681691679173.338378-UTR-H-elongata_contig138898:559..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138898 560..568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.2769594-CDS-H-elongata_contig138898:568..7271622929824.2769594-CDS-H-elongata_contig138898:568..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138898 569..727 +
1691679173.3565674-CDS-H-elongata_contig138898:568..7271691679173.3565674-CDS-H-elongata_contig138898:568..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138898 569..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138898.2711.1prot_H-elongata_contig138898.2711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138898 569..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138898.2711.1

>prot_H-elongata_contig138898.2711.1 ID=prot_H-elongata_contig138898.2711.1|Name=mRNA_H-elongata_contig138898.2711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MIEEFNRRRNKTARVFLLSTRAGNMGINLVAANRVILMDTSWNPANDLQA
MFR
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mRNA from alignment at H-elongata_contig138898:560..727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138898.2711.1 ID=mRNA_H-elongata_contig138898.2711.1|Name=mRNA_H-elongata_contig138898.2711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig138898:560..727+ (Himanthalia elongata Himel1 dioecious)
AGGCAAATTATGATCGAGGAATTTAATCGCCGTAGAAACAAGACCGCTAG
GGTGTTTCTGCTGTCTACCAGAGCAGGCAACATGGGCATCAACCTCGTGG
CCGCCAATCGAGTGATTCTGATGGACACCAGCTGGAACCCTGCCAATGAT
CTTCAGGCCATGTTTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig138898:560..727+

>mRNA_H-elongata_contig138898.2711.1 ID=mRNA_H-elongata_contig138898.2711.1|Name=mRNA_H-elongata_contig138898.2711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig138898:560..727+ (Himanthalia elongata Himel1 dioecious)
ATGATCGAGGAATTTAATCGCCGTAGAAACAAGACCGCTAGGGTGTTTCT
GCTGTCTACCAGAGCAGGCAACATGGGCATCAACCTCGTGGCCGCCAATC
GAGTGATTCTGATGGACACCAGCTGGAACCCTGCCAATGATCTTCAGGCC
ATGTTTAGGATGATCGAGGAATTTAATCGCCGTAGAAACAAGACCGCTAG
GGTGTTTCTGCTGTCTACCAGAGCAGGCAACATGGGCATCAACCTCGTGG
CCGCCAATCGAGTGATTCTGATGGACACCAGCTGGAACCCTGCCAATGAT
CTTCAGGCCATGTTTAGG
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