mRNA_H-elongata_contig138875.2708.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138875.2708.1
Unique NamemRNA_H-elongata_contig138875.2708.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: D8LC81_ECTSI (MMtag domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC81_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.490e-26
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
            MGD+RYRVGGTRGGQDQFKW+DVK D+HRENYLGHSLLAPVGRWQ+G+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGK 48
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BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A6H5JW83_9PHAE (MMtag domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW83_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.050e-23
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
            MGD+RYRVGGTRGGQDQFKW+DVK D+HRENYLGHSLLAPVGRWQ+G+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGK 48
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BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: T0QSS1_SAPDV (MMtag domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSS1_SAPDV)

HSP 1 Score: 88.2 bits (217), Expect = 4.630e-21
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YRVGGTRGGQDQFKWDDVK+D +RENYLGHSL APVGRW KG+
Sbjct:    3 FGKTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A067D0L3_SAPPC (MMtag domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D0L3_SAPPC)

HSP 1 Score: 88.2 bits (217), Expect = 2.670e-20
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YRVGGTRGGQDQFKWDDVK+D +RENYLGHSL APVGRW KG+
Sbjct:    3 FGKTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: G4YNR6_PHYSP (MMtag domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNR6_PHYSP)

HSP 1 Score: 85.5 bits (210), Expect = 5.170e-20
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQKG+
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A7S2HQR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HQR7_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 8.600e-20
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
            MG   YRVGGTRGG DQFKWDDVK D +R+NYLGHSL APVGRWQ+G+
Sbjct:    9 MGKDSYRVGGTRGGADQFKWDDVKDDKYRDNYLGHSLHAPVGRWQRGK 56
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A1V9YH31_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH31_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-19
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YR GGTRGGQDQFKWDDVK+D +RENYLGHSL APVGRW KG+
Sbjct:    3 FGKTNYRFGGTRGGQDQFKWDDVKNDKYRENYLGHSLNAPVGRWAKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A024T9F3_9STRA (MMtag domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9F3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-19
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YR GGTRGGQDQFKWDDVK+D +RENYLGHSL APVGRW KG+
Sbjct:    3 FGKTNYRFGGTRGGQDQFKWDDVKNDKYRENYLGHSLNAPVGRWAKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A3R7J9M4_9STRA (MMtag domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9M4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.230e-19
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQKG+
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
[Close]
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Match: A0A2P4XPU4_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPU4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.150e-19
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE 144
             G   YR+GGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQKG+
Sbjct:    3 FGKTNYRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138875.2708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC81_ECTSI7.490e-2687.50MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JW83_9PHAE1.050e-2387.50MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
T0QSS1_SAPDV4.630e-2179.17MMtag domain-containing protein n=1 Tax=Saprolegni... [more]
A0A067D0L3_SAPPC2.670e-2079.17MMtag domain-containing protein n=1 Tax=Saprolegni... [more]
G4YNR6_PHYSP5.170e-2075.00MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
A0A7S2HQR7_9EUKA8.600e-2077.08Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A1V9YH31_9STRA1.930e-1977.08T-complex protein 1 subunit zeta n=1 Tax=Achlya hy... [more]
A0A024T9F3_9STRA2.200e-1977.08MMtag domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A3R7J9M4_9STRA2.230e-1975.00MMtag domain-containing protein n=3 Tax=Phytophtho... [more]
A0A2P4XPU4_9STRA3.150e-1972.92T-complex protein 1 subunit zeta n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138875contigH-elongata_contig138875:1150..1293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.4e-20
Seed eggNOG ortholog2880.D8LC81
Preferred nameC1orf35
KEGG koko:K09498,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503,GO:0101002,GO:1904813
EggNOG free text desc.Kinase phosphorylation protein
EggNOG OGsKOG4520@1,KOG4520@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko03400,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionKinase phosphorylation domain
Ec32 orthologEc-20_004770.1
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.0904763-CDS-H-elongata_contig138875:1149..12931622929824.0904763-CDS-H-elongata_contig138875:1149..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138875 1150..1293 +
1691679173.291328-CDS-H-elongata_contig138875:1149..12931691679173.291328-CDS-H-elongata_contig138875:1149..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138875 1150..1293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138875.2708.1prot_H-elongata_contig138875.2708.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138875 1150..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138875.2708.1

>prot_H-elongata_contig138875.2708.1 ID=prot_H-elongata_contig138875.2708.1|Name=mRNA_H-elongata_contig138875.2708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MGDRRYRVGGTRGGQDQFKWDDVKSDLHRENYLGHSLLAPVGRWQKGE
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mRNA from alignment at H-elongata_contig138875:1150..1293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138875.2708.1 ID=mRNA_H-elongata_contig138875.2708.1|Name=mRNA_H-elongata_contig138875.2708.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig138875:1150..1293+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGACAGGCGATATCGCGTGGGTGGAACTCGAGGTGGTCAGGATCA
GTTCAAATGGGATGATGTGAAGAGTGACCTCCATCGAGAAAATTACCTCG
GACACAGCCTCTTGGCTCCGGTTGGCAGGTGGCAAAAAGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig138875:1150..1293+

>mRNA_H-elongata_contig138875.2708.1 ID=mRNA_H-elongata_contig138875.2708.1|Name=mRNA_H-elongata_contig138875.2708.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig138875:1150..1293+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGACAGGCGATATCGCGTGGGTGGAACTCGAGGTGGTCAGGATCA
GTTCAAATGGGATGATGTGAAGAGTGACCTCCATCGAGAAAATTACCTCG
GACACAGCCTCTTGGCTCCGGTTGGCAGGTGGCAAAAAGGTGAGATGGGA
GACAGGCGATATCGCGTGGGTGGAACTCGAGGTGGTCAGGATCAGTTCAA
ATGGGATGATGTGAAGAGTGACCTCCATCGAGAAAATTACCTCGGACACA
GCCTCTTGGCTCCGGTTGGCAGGTGGCAAAAAGGTGAG
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