mRNA_H-elongata_contig138614.2698.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI) HSP 1 Score: 187 bits (476), Expect = 5.580e-58 Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 1
Query: 1 AGAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
AGAPVSK L I+T ++TLVVL N SQ T +L+G RV G++ +WWRLLTS+FPLGSVWEL+L L+ IR+FR+LERH+GSAKFGSFL LAALL+K+ ELALCV+ P RPP GP ILSA+ Y+GYI TAPAYLT+G+ R
Sbjct: 7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVR 147
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE) HSP 1 Score: 187 bits (476), Expect = 9.160e-57 Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1
Query: 1 AGAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
AGAPVSK L I+T ++TLVVL N SQ T +L+G RV G++ +WWRLLTS+FPLGSVWEL+L L+ IR+FR+LERH+GSAKFGSFL LAALL+K+ ELALCV+ P RPP GP ILSA+ Y+GYI TAPAYLTVG+ R
Sbjct: 7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVR 147
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD) HSP 1 Score: 62.4 bits (150), Expect = 8.950e-9 Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 124 EWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSL--RPPSGPHAILSALATTYHGYITYTAP 396
++WRLLT+ + L+ + FRV+ER MGS KFGS ++ LT ELA + PSL + P GP+A+L ALA ++ YI P
Sbjct: 34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYP 126
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: G4ZVF7_PHYSP (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVF7_PHYSP) HSP 1 Score: 59.7 bits (143), Expect = 9.300e-8 Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1
Query: 124 EWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
++WRLL+S + L L+ + FRVLER MGS KFGS L+ L++ +LA P L P G + ++ A A ++ +I +P L+VG
Sbjct: 49 QYWRLLSSQLTFHHGLAVSLGLYVVFQFRVLERQMGSRKFGSILVFTLLISGALQLAALTSAPWLAKMIPGGAYPVIGAFAVFFNRFIPKMSPRSLSVGGLH 150
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN) HSP 1 Score: 58.5 bits (140), Expect = 2.330e-7 Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 1
Query: 4 GAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSL--RPPSGPHAILSALATTYHGYITYTAP-AYLTVG 414
GAPV+ + A+ L + SL+G ++WRL +S L+ I FRVLER MGS KFGS + ++ +LA + PSL R P GP+A+L AL + ++ P AY VG
Sbjct: 10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVG 149
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN) HSP 1 Score: 57.4 bits (137), Expect = 5.950e-7 Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
+++WRL++S + L L+ + FRVLER +GS KFGS L+ L++ +LA +P L P GP+ I+ A A ++ +I P
Sbjct: 48 SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHP 141
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: D0NK77_PHYIT (UBA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NK77_PHYIT) HSP 1 Score: 57.4 bits (137), Expect = 6.000e-7 Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
+++WRL++S + L L+ + FRVLER +GS KFGS L+ L++ +LA +P L P GP+ I+ A A ++ +I P
Sbjct: 48 SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHP 141
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: V9F720_PHYPR (UBA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F720_PHYPR) HSP 1 Score: 57.4 bits (137), Expect = 6.240e-7 Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
+++WRL++S + L L+A+ FRVLER +GS KFGS L+ L++ +LA P L P GP+ ++ A A ++ +I P
Sbjct: 66 SQYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHP 159
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A0W8DAG0_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAG0_PHYNI) HSP 1 Score: 57.4 bits (137), Expect = 7.050e-7 Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
+++WRL++S + L L+A+ FRVLER +GS KFGS L+ L++ +LA P L P GP+ ++ A A ++ +I P
Sbjct: 284 SQYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHP 377
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A2P6N3U0_9EUKA (UBA domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3U0_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 7.430e-7 Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 7 APVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTY 369
AP+SK + +LT +++ K +H + R+ E + + RL + P EL+ I FR+ ERHMG+ KFG F+L + + + +LAL V S+ PSGP+ + A + Y
Sbjct: 402 APLSKCVLLLTGSVSVLASIMKFKHNLDFP--RLPSEASGFLRLFSHHIPFTGAGELLFGFILIYTFRMFERHMGTRKFGMFILASTGIYSSLQLALYVIAKSVSLPSGPYPFIFACMSLY 520 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig138614.2698.1 >prot_H-elongata_contig138614.2698.1 ID=prot_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MVATPNQLVPSGKRVGADVKPARHPHVSGAGKTYGLREVRLVSALGCSLDback to top mRNA from alignment at H-elongata_contig138614:520..1732+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig138614.2698.1 ID=mRNA_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1213bp|location=Sequence derived from alignment at H-elongata_contig138614:520..1732+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig138614:520..1732+ >mRNA_H-elongata_contig138614.2698.1 ID=mRNA_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig138614:520..1732+ (Himanthalia elongata Himel1 dioecious)back to top |