mRNA_H-elongata_contig138614.2698.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138614.2698.1
Unique NamemRNA_H-elongata_contig138614.2698.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 5.580e-58
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 AGAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
            AGAPVSK L I+T ++TLVVL N SQ T +L+G RV G++ +WWRLLTS+FPLGSVWEL+L L+ IR+FR+LERH+GSAKFGSFL LAALL+K+ ELALCV+ P  RPP GP  ILSA+   Y+GYI  TAPAYLT+G+ R
Sbjct:    7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVR 147          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 9.160e-57
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 AGAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
            AGAPVSK L I+T ++TLVVL N SQ T +L+G RV G++ +WWRLLTS+FPLGSVWEL+L L+ IR+FR+LERH+GSAKFGSFL LAALL+K+ ELALCV+ P  RPP GP  ILSA+   Y+GYI  TAPAYLTVG+ R
Sbjct:    7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVR 147          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 8.950e-9
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  124 EWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSL--RPPSGPHAILSALATTYHGYITYTAP 396
            ++WRLLT+         +   L+ +  FRV+ER MGS KFGS ++    LT   ELA  +  PSL  + P GP+A+L ALA  ++ YI    P
Sbjct:   34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYP 126          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: G4ZVF7_PHYSP (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVF7_PHYSP)

HSP 1 Score: 59.7 bits (143), Expect = 9.300e-8
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  124 EWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAPAYLTVGDFR 423
            ++WRLL+S         + L L+ +  FRVLER MGS KFGS L+   L++   +LA     P L    P G + ++ A A  ++ +I   +P  L+VG   
Sbjct:   49 QYWRLLSSQLTFHHGLAVSLGLYVVFQFRVLERQMGSRKFGSILVFTLLISGALQLAALTSAPWLAKMIPGGAYPVIGAFAVFFNRFIPKMSPRSLSVGGLH 150          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 2.330e-7
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 1
Query:    4 GAPVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSL--RPPSGPHAILSALATTYHGYITYTAP-AYLTVG 414
            GAPV+    +    A+   L    +   SL+G        ++WRL +S             L+ I  FRVLER MGS KFGS +     ++   +LA  +  PSL  R P GP+A+L AL   +  ++    P AY  VG
Sbjct:   10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVG 149          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN)

HSP 1 Score: 57.4 bits (137), Expect = 5.950e-7
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
            +++WRL++S         + L L+ +  FRVLER +GS KFGS L+   L++   +LA    +P L    P GP+ I+ A A  ++ +I    P
Sbjct:   48 SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHP 141          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: D0NK77_PHYIT (UBA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NK77_PHYIT)

HSP 1 Score: 57.4 bits (137), Expect = 6.000e-7
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
            +++WRL++S         + L L+ +  FRVLER +GS KFGS L+   L++   +LA    +P L    P GP+ I+ A A  ++ +I    P
Sbjct:   48 SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHP 141          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: V9F720_PHYPR (UBA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F720_PHYPR)

HSP 1 Score: 57.4 bits (137), Expect = 6.240e-7
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
            +++WRL++S         + L L+A+  FRVLER +GS KFGS L+   L++   +LA     P L    P GP+ ++ A A  ++ +I    P
Sbjct:   66 SQYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHP 159          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A0W8DAG0_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAG0_PHYNI)

HSP 1 Score: 57.4 bits (137), Expect = 7.050e-7
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  121 NEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRP--PSGPHAILSALATTYHGYITYTAP 396
            +++WRL++S         + L L+A+  FRVLER +GS KFGS L+   L++   +LA     P L    P GP+ ++ A A  ++ +I    P
Sbjct:  284 SQYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHP 377          
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Match: A0A2P6N3U0_9EUKA (UBA domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3U0_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 7.430e-7
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:    7 APVSKILCILTTLATLVVLSNKSQHTVSLVGYRVTGEENEWWRLLTSLFPLGSVWELMLSLHAIRMFRVLERHMGSAKFGSFLLLAALLTKTTELALCVQNPSLRPPSGPHAILSALATTY 369
            AP+SK + +LT   +++    K +H +     R+  E + + RL +   P     EL+     I  FR+ ERHMG+ KFG F+L +  +  + +LAL V   S+  PSGP+  + A  + Y
Sbjct:  402 APLSKCVLLLTGSVSVLASIMKFKHNLDFP--RLPSEASGFLRLFSHHIPFTGAGELLFGFILIYTFRMFERHMGTRKFGMFILASTGIYSSLQLALYVIAKSVSLPSGPYPFIFACMSLY 520          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138614.2698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LPP7_ECTSI5.580e-5866.67Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6R3_9PHAE9.160e-5767.38UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3W5T0_GLOUD8.950e-939.78UBA domain-containing protein n=1 Tax=Globisporang... [more]
G4ZVF7_PHYSP9.300e-834.31UBA domain-containing protein n=4 Tax=Phytophthora... [more]
A0A2D4C2S4_PYTIN2.330e-732.86UBA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A833T6G0_PHYIN5.950e-734.04Putative DSC E3 ubiquitin ligase complex subunit 2... [more]
D0NK77_PHYIT6.000e-734.04UBA domain-containing protein n=3 Tax=Phytophthora... [more]
V9F720_PHYPR6.240e-734.04UBA domain-containing protein n=8 Tax=Phytophthora... [more]
A0A0W8DAG0_PHYNI7.050e-734.04Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A2P6N3U0_9EUKA7.430e-732.23UBA domain-containing protein n=1 Tax=Planoprotost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138614contigH-elongata_contig138614:520..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size426
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138614.2698.1prot_H-elongata_contig138614.2698.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138614 938..1732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.8095233-UTR-H-elongata_contig138614:519..6231622929822.8095233-UTR-H-elongata_contig138614:519..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138614 520..623 +
1691679172.6497574-UTR-H-elongata_contig138614:519..6231691679172.6497574-UTR-H-elongata_contig138614:519..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138614 520..623 +
1622929822.8295999-UTR-H-elongata_contig138614:916..9371622929822.8295999-UTR-H-elongata_contig138614:916..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138614 917..937 +
1691679172.6580124-UTR-H-elongata_contig138614:916..9371691679172.6580124-UTR-H-elongata_contig138614:916..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138614 917..937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.8461828-CDS-H-elongata_contig138614:937..10331622929822.8461828-CDS-H-elongata_contig138614:937..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 938..1033 +
1691679172.6667662-CDS-H-elongata_contig138614:937..10331691679172.6667662-CDS-H-elongata_contig138614:937..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 938..1033 +
1622929822.8681078-CDS-H-elongata_contig138614:1338..14901622929822.8681078-CDS-H-elongata_contig138614:1338..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 1339..1490 +
1691679172.6756885-CDS-H-elongata_contig138614:1338..14901691679172.6756885-CDS-H-elongata_contig138614:1338..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 1339..1490 +
1622929822.8837707-CDS-H-elongata_contig138614:1680..17321622929822.8837707-CDS-H-elongata_contig138614:1680..1732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 1681..1732 +
1691679172.684705-CDS-H-elongata_contig138614:1680..17321691679172.684705-CDS-H-elongata_contig138614:1680..1732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138614 1681..1732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138614.2698.1

>prot_H-elongata_contig138614.2698.1 ID=prot_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MVATPNQLVPSGKRVGADVKPARHPHVSGAGKTYGLREVRLVSALGCSLD
QDHGAGPLCAEPFSQAAFRPTCYLERPGYNLPWLHYIYRTSLLDRRGLST
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mRNA from alignment at H-elongata_contig138614:520..1732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138614.2698.1 ID=mRNA_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1213bp|location=Sequence derived from alignment at H-elongata_contig138614:520..1732+ (Himanthalia elongata Himel1 dioecious)
GCCGGAGCACCCGTGAGCAAGATCTTGTGCATCTTGACCACTTTAGCCAC GTTGGTCGTCCTCTCAAACAAGAGCCAGCATACGGTTTCGCTTGTTGGCT ACAGGTGAACTCCACGCGATGAGTCCTTCTTGTATCGAGCGCCTTTCTCT CCGAAATTGATTGGTATATAGTATACAGCATGAGGCGCAAATGGCTTGTG GCACTGGCACTGGTTATTATGATGGCATGCTGACGTCTGTGTGTGCCCCC TCTCCTCTATGCTCTATAAGCCTATCACCTAGGGAGGGTTGTGCAGCAGC AGGAGCATTATCAACCCAAACATCCCATCATGAATGTAAATGTCAAACTG ACCTCATGCTATGACGAAATGCTATGACGAAATGCTATGACGAAAAGGGT CACAGGCGAAGAAAATGAATGGTGGCGACTCCTAACCAGCTTGTTCCCTC TGGGAAGCGTGTGGGAGCTGATGTTAAGCCTGCACGCCATCCGCATGTTT CGGGTGCTGGAAAGGTCAGCCAACAACAATCCATCCTGAATGTGTTGCAA TTATAGCTGCTGGAAATAACTGCTGTAATGGGGCTATAATGGGGCTTTAC ACAGCCACACACAGTATATATCTATATCTATATATATAGTATATATCCTC TATGTCCAACAAGATGATGAGGGGATGCTATCACCGTTGGCCTATCCATT GCATGGCCATGACCATGTTAGATTATCCTATTGTCCCTCCTTTATGCCAG CTGTGACCACAATGCTCCTTGACACAACCACTATACTCTACTCTCCTTTG TGTCTCATAACCGATCAAGACATATGGGCTCCGCGAAGTTCGGCTCGTTT CTGCTCTTGGCTGCTCTCTTGACCAAGACCACGGAGCTGGCCCTTTGTGT GCAGAACCCTTCTCTCAGGCCGCCTTCAGGCCCACATGCTATCTTGAGCG CCCTGGCTACAACCTACCATGGTCAGTCGCCACGAGCGCTATACAGTTGG AGAGCATCATAAATATGCTATATAATATATAGTCGATTATATAGTCGATT GATGACACGCGGCTCCCTCGGTTTTGCAAAACACACTGCTAAGGCACGTG CGTGTTGCATACTTGAAAAAAAATGTGCGCGTGCTGAATTGTGGTTCTGC CCAACTTCAAGGTTACATTACATATACCGCACCAGCCTACTTGACCGTCG GGGACTTTCGACT
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Coding sequence (CDS) from alignment at H-elongata_contig138614:520..1732+

>mRNA_H-elongata_contig138614.2698.1 ID=mRNA_H-elongata_contig138614.2698.1|Name=mRNA_H-elongata_contig138614.2698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig138614:520..1732+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCGACTCCTAACCAGCTTGTTCCCTCTGGGAAGCGTGTGGGAGC
TGATGTTAAGCCTGCACGCCATCCGCATGTTTCGGGTGCTGGAAAGATGG
TGGCGACTCCTAACCAGCTTGTTCCCTCTGGGAAGCGTGTGGGAGCTGAT
GTTAAGCCTGCACGCCATCCGCATGTTTCGGGTGCTGGAAAGACATATGG
GCTCCGCGAAGTTCGGCTCGTTTCTGCTCTTGGCTGCTCTCTTGACCAAG
ACCACGGAGCTGGCCCTTTGTGTGCAGAACCCTTCTCTCAGGCCGCCTTC
AGGCCCACATGCTATCTTGAGCGCCCTGGCTACAACCTACCATGACATAT
GGGCTCCGCGAAGTTCGGCTCGTTTCTGCTCTTGGCTGCTCTCTTGACCA
AGACCACGGAGCTGGCCCTTTGTGTGCAGAACCCTTCTCTCAGGCCGCCT
TCAGGCCCACATGCTATCTTGAGCGCCCTGGCTACAACCTACCATGGTTA
CATTACATATACCGCACCAGCCTACTTGACCGTCGGGGACTTTCGACTGT
TACATTACATATACCGCACCAGCCTACTTGACCGTCGGGGACTTTCGACT
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