mRNA_H-elongata_contig138240.2675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138240.2675.1
Unique NamemRNA_H-elongata_contig138240.2675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A2K3K1Y4_TRIPR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K1Y4_TRIPR)

HSP 1 Score: 61.2 bits (147), Expect = 4.420e-10
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKDLPKRLFIEWNQESV 252
             WW  YG    P+L K+AIR  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ+++  K+ +   N E++
Sbjct:    2 QWWEMYGTEA-PNLKKLAIRILSQTCSASGCERNWSVFEHIHSKKRNRLEHQKLNDLVFVRYNLRLQNRNQKKQNYDPINFETL 84          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A6A5MXA4_LUPAL (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXA4_LUPAL)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-9
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDK 207
             WW TYG    P+L K+A+R  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:    4 QWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 71          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: UPI00092ED33F (uncharacterized protein LOC109339874 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092ED33F)

HSP 1 Score: 62.0 bits (149), Expect = 2.470e-9
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKD 210
             WW +YG  G P+L ++AIR  S+  SS+G ERNWS++  +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  262 QWWESYG-CGAPNLQQLAIRILSQTYSSSGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 330          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: UPI00092F4EA0 (uncharacterized protein LOC109333975 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F4EA0)

HSP 1 Score: 61.2 bits (147), Expect = 4.550e-9
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKD 210
             WW TYG    P+L K+A+R  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ ++
Sbjct:  248 QWWETYG-CRAPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRN 316          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: UPI00092EBF14 (uncharacterized protein LOC109333050 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EBF14)

HSP 1 Score: 60.8 bits (146), Expect = 4.940e-9
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKD 210
             WW +YG  G P+L ++AIR  S+  S++G ERNWS++  +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  121 QWWESYG-CGAPNLQQLAIRILSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 189          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A6A5M7K7_LUPAL (Phosphopyruvate hydratase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7K7_LUPAL)

HSP 1 Score: 60.8 bits (146), Expect = 6.560e-9
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDK 207
             WW TYG    P+L K+A+R  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  678 QWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 745          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A6N2M2F6_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2M2F6_SALVM)

HSP 1 Score: 59.3 bits (142), Expect = 2.280e-8
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKDL 213
             WW  +G +  P+L K AIR  S+  S+ G ERNWS++  +   +  R+  +R   LVFVR NL++Q ++L
Sbjct:  537 SWWEQFGNV-TPELQKFAIRVLSQCCSATGCERNWSVFEHIHSKKRNRLEHKRLNDLVFVRYNLKIQQRNL 606          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: UPI00092F8957 (uncharacterized protein LOC109329267 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F8957)

HSP 1 Score: 58.9 bits (141), Expect = 3.010e-8
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDK 207
             WW TYG    P+L ++ +R  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  263 QWWETYG-CRTPNLQRLTVRVLSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVFVRYNLRLQQR 330          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A6A5N2L1_LUPAL (BED-type domain-containing protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5N2L1_LUPAL)

HSP 1 Score: 58.9 bits (141), Expect = 3.090e-8
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDK 207
             WW TY +   P+L K+A+R  S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  437 QWWETY-RCCTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLENQKLNDLVFVRYNLRLQQR 504          
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Match: A0A2Z6NFM0_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NFM0_TRISU)

HSP 1 Score: 57.8 bits (138), Expect = 7.880e-8
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMGPERARKLVFVRANLRLQDKDLPKRLFIEWNQESV 252
             WW  YG    P+L K+AI   S+  S++G ERNWS++  +   +  R+  ++   LVFVR NLRLQ+++  K  +   N E++
Sbjct:  512 QWWEMYGTEA-PNLKKLAIWILSQTCSASGCERNWSVFEHIQSKKRNRLEHQKLNDLVFVRYNLRLQNRNKKKLNYDPINFETL 594          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138240.2675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3K1Y4_TRIPR4.420e-1038.10Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6A5MXA4_LUPAL1.520e-942.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lu... [more]
UPI00092ED33F2.470e-941.43uncharacterized protein LOC109339874 n=1 Tax=Lupin... [more]
UPI00092F4EA04.550e-941.43uncharacterized protein LOC109333975 n=1 Tax=Lupin... [more]
UPI00092EBF144.940e-940.00uncharacterized protein LOC109333050 n=2 Tax=Lupin... [more]
A0A6A5M7K7_LUPAL6.560e-942.03Phosphopyruvate hydratase n=1 Tax=Lupinus albus Ta... [more]
A0A6N2M2F6_SALVM2.280e-839.44Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
UPI00092F89573.010e-839.13uncharacterized protein LOC109329267 n=1 Tax=Lupin... [more]
A0A6A5N2L1_LUPAL3.090e-840.58BED-type domain-containing protein n=2 Tax=Lupinus... [more]
A0A2Z6NFM0_TRISU7.880e-836.90Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138240contigH-elongata_contig138240:259..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog90675.XP_010490018.1
EggNOG OGs2C7QK@1,2QRQU@2759,37TNR@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.3601556-CDS-H-elongata_contig138240:258..5101622929820.3601556-CDS-H-elongata_contig138240:258..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138240 259..510 +
1691679170.4348843-CDS-H-elongata_contig138240:258..5101691679170.4348843-CDS-H-elongata_contig138240:258..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138240 259..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138240.2675.1prot_H-elongata_contig138240.2675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138240 259..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138240.2675.1

>prot_H-elongata_contig138240.2675.1 ID=prot_H-elongata_contig138240.2675.1|Name=mRNA_H-elongata_contig138240.2675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
DWWVTYGKIGLPDLAKVAIRTTSKVPSSAGSERNWSLYGDVMGGRHTRMG
PERARKLVFVRANLRLQDKDLPKRLFIEWNQESV
back to top

mRNA from alignment at H-elongata_contig138240:259..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138240.2675.1 ID=mRNA_H-elongata_contig138240.2675.1|Name=mRNA_H-elongata_contig138240.2675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig138240:259..510+ (Himanthalia elongata Himel1 dioecious)
GACTGGTGGGTAACCTACGGAAAGATCGGCCTGCCGGACTTGGCCAAAGT AGCCATTCGCACGACTTCAAAGGTACCTTCATCGGCAGGATCGGAGCGCA ATTGGAGTCTGTACGGAGATGTCATGGGCGGAAGGCACACACGGATGGGC CCCGAGCGTGCCAGAAAGTTGGTGTTCGTGAGGGCTAACCTGAGGCTGCA GGATAAAGACTTACCCAAGCGGTTGTTCATTGAGTGGAACCAGGAGTCAG TA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig138240:259..510+

>mRNA_H-elongata_contig138240.2675.1 ID=mRNA_H-elongata_contig138240.2675.1|Name=mRNA_H-elongata_contig138240.2675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig138240:259..510+ (Himanthalia elongata Himel1 dioecious)
GACTGGTGGGTAACCTACGGAAAGATCGGCCTGCCGGACTTGGCCAAAGT
AGCCATTCGCACGACTTCAAAGGTACCTTCATCGGCAGGATCGGAGCGCA
ATTGGAGTCTGTACGGAGATGTCATGGGCGGAAGGCACACACGGATGGGC
CCCGAGCGTGCCAGAAAGTTGGTGTTCGTGAGGGCTAACCTGAGGCTGCA
GGATAAAGACTTACCCAAGCGGTTGTTCATTGAGTGGAACCAGGAGTCAG
TAGACTGGTGGGTAACCTACGGAAAGATCGGCCTGCCGGACTTGGCCAAA
GTAGCCATTCGCACGACTTCAAAGGTACCTTCATCGGCAGGATCGGAGCG
CAATTGGAGTCTGTACGGAGATGTCATGGGCGGAAGGCACACACGGATGG
GCCCCGAGCGTGCCAGAAAGTTGGTGTTCGTGAGGGCTAACCTGAGGCTG
CAGGATAAAGACTTACCCAAGCGGTTGTTCATTGAGTGGAACCAGGAGTC
AGTA
back to top