mRNA_H-elongata_contig13804.2665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13804.2665.1
Unique NamemRNA_H-elongata_contig13804.2665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13804.2665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13804contigH-elongata_contig13804:591..1765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.4843662-CDS-H-elongata_contig13804:590..7521622929819.4843662-CDS-H-elongata_contig13804:590..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13804 591..752 +
1691679170.0907068-CDS-H-elongata_contig13804:590..7521691679170.0907068-CDS-H-elongata_contig13804:590..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13804 591..752 +
1622929819.501923-CDS-H-elongata_contig13804:1409..17631622929819.501923-CDS-H-elongata_contig13804:1409..1763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13804 1410..1763 +
1691679170.100117-CDS-H-elongata_contig13804:1409..17631691679170.100117-CDS-H-elongata_contig13804:1409..1763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13804 1410..1763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13804.2665.1prot_H-elongata_contig13804.2665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13804 591..1763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13804.2665.1

>prot_H-elongata_contig13804.2665.1 ID=prot_H-elongata_contig13804.2665.1|Name=mRNA_H-elongata_contig13804.2665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
AETVHAGKRGKPVKNSKHPPYFPVGARVMLTKKFTGKHSPRGPHIDPVEL
VGKAAIVTRSGTYLCGPKFHCLSFEPWRGGPVETITWTVPRHCLALCPTT
DHLQNAGDDTAATGAAPVSASASSSSQVEISTASVAAALGNGPTKGMSDG
AKKAEVEKTRENQSQAVGEIEA
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mRNA from alignment at H-elongata_contig13804:591..1765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13804.2665.1 ID=mRNA_H-elongata_contig13804.2665.1|Name=mRNA_H-elongata_contig13804.2665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig13804:591..1765+ (Himanthalia elongata Himel1 dioecious)
GCGGAAACGGTGCACGCTGGGAAGCGGGGCAAGCCCGTGAAAAATTCGAA
GCATCCGCCGTACTTCCCCGTCGGGGCGAGGGTAATGCTTACAAAGAAAT
TCACTGGCAAGCACAGCCCGCGGGGCCCTCACATCGACCCGGTCGAGCTC
GTCGGGAAAGCGGTGAGAGGCGCCTAGGCAAGAAAAACAAAAATACTGCT
ATTTCGTTCATTTTCACCCTCTGGAAAAGGGAAGAAAGAGGATGTTGCGC
ACGGTTTTCGAAATAAATATAAATGAACATAATTTTTTATATATATTTAT
ATTAGAATAATAAAAAAACTCTCGCAGAAAGAGAGGCGTAAATTGGGGGA
GGAGAGGGTGGAGAATGAACTAGTAACGCGGTCTTACGGTTCACCCTGAA
AGTATGCCCTTGGAAGCTTGCCGTAGCTCGCGCTTCTTCTCGGCCTGATT
ATCGTACACAGACTGTCTTGTCTCTAAAGCCGATCCCGCCAAGCCGCTGA
ATTCAACCCGCGGTGGCGCGATATCGTTTTGGTAGCGGTGCCATAAGATA
ACCCCGGGCGCAAACCGTGCGTCGCCCTCGATCCTCGATCCTCTCGTGGA
AGCCGCTGCGGCGCCCTCGCTACCCTTCTCAGTGATCGTTCCCTTATTTT
TCGCTTACATTATAGACTACTCGTCTAGCTGTATAGCTTCAGAAAAGGCG
ACGGCGATAGCGATTGTGCAGCATGTTCCTTTGAGATCCCCTGTACTATC
CTGTGAACACGCGTGACGTTCTCCGACGCTCTTGATGCATCCAAACGCAC
AACATGACATGGTACACAGGCCATCGTAACGCGGTCGGGGACGTACTTGT
GCGGCCCTAAGTTCCACTGCTTGTCCTTCGAGCCTTGGCGTGGCGGGCCC
GTCGAGACGATAACCTGGACGGTGCCCCGCCACTGCCTCGCTCTGTGCCC
GACGACCGACCACCTCCAAAACGCCGGAGACGACACCGCGGCCACTGGTG
CTGCCCCAGTCTCTGCATCTGCCTCTTCCTCCTCCCAAGTGGAGATATCG
ACGGCCTCGGTTGCGGCGGCTCTTGGTAACGGCCCGACCAAAGGCATGAG
CGATGGTGCCAAGAAGGCAGAGGTCGAGAAAACTCGGGAGAACCAGAGTC
AGGCGGTGGGTGAAATAGAAGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig13804:591..1765+

>mRNA_H-elongata_contig13804.2665.1 ID=mRNA_H-elongata_contig13804.2665.1|Name=mRNA_H-elongata_contig13804.2665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig13804:591..1765+ (Himanthalia elongata Himel1 dioecious)
GCGGAAACGGTGCACGCTGGGAAGCGGGGCAAGCCCGTGAAAAATTCGAA
GCATCCGCCGTACTTCCCCGTCGGGGCGAGGGTAATGCTTACAAAGAAAT
TCACTGGCAAGCACAGCCCGCGGGGCCCTCACATCGACCCGGTCGAGCTC
GTCGGGAAAGCGGCGGAAACGGTGCACGCTGGGAAGCGGGGCAAGCCCGT
GAAAAATTCGAAGCATCCGCCGTACTTCCCCGTCGGGGCGAGGGTAATGC
TTACAAAGAAATTCACTGGCAAGCACAGCCCGCGGGGCCCTCACATCGAC
CCGGTCGAGCTCGTCGGGAAAGCGGCCATCGTAACGCGGTCGGGGACGTA
CTTGTGCGGCCCTAAGTTCCACTGCTTGTCCTTCGAGCCTTGGCGTGGCG
GGCCCGTCGAGACGATAACCTGGACGGTGCCCCGCCACTGCCTCGCTCTG
TGCCCGACGACCGACCACCTCCAAAACGCCGGAGACGACACCGCGGCCAC
TGGTGCTGCCCCAGTCTCTGCATCTGCCTCTTCCTCCTCCCAAGTGGAGA
TATCGACGGCCTCGGTTGCGGCGGCTCTTGGTAACGGCCCGACCAAAGGC
ATGAGCGATGGTGCCAAGAAGGCAGAGGTCGAGAAAACTCGGGAGAACCA
GAGTCAGGCGGTGGGTGAAATAGAAGCGGCCATCGTAACGCGGTCGGGGA
CGTACTTGTGCGGCCCTAAGTTCCACTGCTTGTCCTTCGAGCCTTGGCGT
GGCGGGCCCGTCGAGACGATAACCTGGACGGTGCCCCGCCACTGCCTCGC
TCTGTGCCCGACGACCGACCACCTCCAAAACGCCGGAGACGACACCGCGG
CCACTGGTGCTGCCCCAGTCTCTGCATCTGCCTCTTCCTCCTCCCAAGTG
GAGATATCGACGGCCTCGGTTGCGGCGGCTCTTGGTAACGGCCCGACCAA
AGGCATGAGCGATGGTGCCAAGAAGGCAGAGGTCGAGAAAACTCGGGAGA
ACCAGAGTCAGGCGGTGGGTGAAATAGAAGCG
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