mRNA_H-elongata_contig13785.2658.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13785.2658.1
Unique NamemRNA_H-elongata_contig13785.2658.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13785.2658.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.680e-9
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 1 
Query:    1 GKITIDGAYTASECIARGGGGDSADGDGNGIWNGETGQVVIDGAVNMTDCGNREVEGNLGGAIYNLGAFSISSNASFTNNWSSAG-AIYNGATGVFEFLDGSFATFTENRSSDARGGALTNAVGGAMTFTGGAKFTD 408
            G   +DG  T + C   G G +S  G G  ++ GETG V+ +G V +TD    +  G  GG IYNLG  +I  ++ F +  +S+G AIYNG    F F  G+ A F +  + D+ G AL N   G   F+G A F D
Sbjct:  244 GYFRVDGEATFTGCDISGAG-ESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNR--GFFKFSGPALFFD 377
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BLAST of mRNA_H-elongata_contig13785.2658.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.890e-8
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:    1 GKITIDGAYTASECIARGGGGDSADGDGNGIWNGETGQVVIDGAVNMTDCGNREVEGNLGGAIYNLGAFSISSNASFTNNWSSAG-AIYNGATGVFEFLDGSFATFTENRSSDARGGALTNAVGGAMTFTGGAKFTD 408
            G   +DG  T + C   G G +S  G G  ++ GETG V+ +  V +T+    +  G  GG IYNLG  +I  ++ F    +SAG AIYNG    F F +G+ A F +  + D+ G AL N   G   F+G A F D
Sbjct:  135 GYFRVDGEATFTGCDIIGAG-ESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNL--GFFKFSGPAFFFD 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13785.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCE5_9PHAE5.680e-937.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Q9_ECTSI2.890e-837.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13785contigH-elongata_contig13785:1639..5389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2083
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.7326517-UTR-H-elongata_contig13785:1638..17761622929818.7326517-UTR-H-elongata_contig13785:1638..1776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13785 1639..1776 +
1691679169.7711403-UTR-H-elongata_contig13785:1638..17761691679169.7711403-UTR-H-elongata_contig13785:1638..1776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13785 1639..1776 +
1622929818.836759-UTR-H-elongata_contig13785:3951..53891622929818.836759-UTR-H-elongata_contig13785:3951..5389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13785 3952..5389 +
1691679169.8360097-UTR-H-elongata_contig13785:3951..53891691679169.8360097-UTR-H-elongata_contig13785:3951..5389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13785 3952..5389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.7470129-CDS-H-elongata_contig13785:1776..17971622929818.7470129-CDS-H-elongata_contig13785:1776..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 1777..1797 +
1691679169.780115-CDS-H-elongata_contig13785:1776..17971691679169.780115-CDS-H-elongata_contig13785:1776..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 1777..1797 +
1622929818.773663-CDS-H-elongata_contig13785:2615..27051622929818.773663-CDS-H-elongata_contig13785:2615..2705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 2616..2705 +
1691679169.7891264-CDS-H-elongata_contig13785:2615..27051691679169.7891264-CDS-H-elongata_contig13785:2615..2705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 2616..2705 +
1622929818.7886505-CDS-H-elongata_contig13785:2847..30561622929818.7886505-CDS-H-elongata_contig13785:2847..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 2848..3056 +
1691679169.8069386-CDS-H-elongata_contig13785:2847..30561691679169.8069386-CDS-H-elongata_contig13785:2847..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 2848..3056 +
1622929818.80878-CDS-H-elongata_contig13785:3336..34631622929818.80878-CDS-H-elongata_contig13785:3336..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 3337..3463 +
1691679169.8171997-CDS-H-elongata_contig13785:3336..34631691679169.8171997-CDS-H-elongata_contig13785:3336..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 3337..3463 +
1622929818.8226008-CDS-H-elongata_contig13785:3891..39511622929818.8226008-CDS-H-elongata_contig13785:3891..3951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 3892..3951 +
1691679169.8266313-CDS-H-elongata_contig13785:3891..39511691679169.8266313-CDS-H-elongata_contig13785:3891..3951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13785 3892..3951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13785.2658.1prot_H-elongata_contig13785.2658.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13785 1777..3951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13785.2658.1

>prot_H-elongata_contig13785.2658.1 ID=prot_H-elongata_contig13785.2658.1|Name=mRNA_H-elongata_contig13785.2658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MTDCGNREVEGNLGGAIYNLGAFSISSNASFTNNWSSAGAIYNGATGVFE
FLDGSFATFTENRSSDARGGALTNAVGGAMTFTGGAKFTDNYSEGDGGAI
GNMGFLSISKSAVFVENRASGSGGAIYNSYTADLNLPDNAVFEDNTIYDW
EDCEDIYMETEDSFECLP*
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mRNA from alignment at H-elongata_contig13785:1639..5389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13785.2658.1 ID=mRNA_H-elongata_contig13785.2658.1|Name=mRNA_H-elongata_contig13785.2658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3751bp|location=Sequence derived from alignment at H-elongata_contig13785:1639..5389+ (Himanthalia elongata Himel1 dioecious)
GGTAAGATCACGATTGACGGTGCCTACACAGCTTCGGAGTGCATTGCACG
CGGTGGTGGTGGGGATTCAGCCGATGGAGACGGAAATGGAATCTGGAACG
GAGAGACAGGGCAGGTGGTGATTGATGGAGCGGTCAATATGACTGACTGC
GGAAACAGGGTAAGTCACGAACAAGGGAAGTCTTTTCCCTGACCACGCCG
CGAATACGTTTTTATTAGTTTGGCGACTTTCGAAATGAATGATGATAATG
GGGTGCATAGTAGAGGCACTGCAGAATCACGTTACAAAAGGTGGTAAATT
CGTAAGCTCTCGCAAGTCCAAATGGTTTTCGGCGGAGACGCAGCCAATGA
ACGAACGGCGGAGGTCACAAAAGTGTACCTGGTTGAAGGACAGGAAGGTA
AAAAAGGCAATGACCCTTCCGGGAGGTTACTTTTTTTGTATCCCTGATTT
TGGTGCTTTATAATGAATCACCGTAGAGGAGGGCGTGTCTACGCTTTATG
CCCGGAAGTGGACAATTTATTTTTTTCCGACTCGGGGAAATTCAAGCAGT
TCGCCCCCTATCGTAGGATTTGTCATACTTATATCCCTCTCTGTCTACAA
TACCAATACACCCCCCCCCCCCGATGGGAGCCTAGATTCTTACACAGGCA
GGTGCTCTGTCGGGACACAGCCGCGAAGTGTCGGTATCAGGGCAGCCTCT
TGTGCCACAGAAGGCCGTGTGGAAGGATGCGTTGGCCCCGTCGCCTTACT
TCTTCCCCAGAGTCCCAGTACAACGTTCTGGCACTCAGAGTTAACACGTT
GAAATATAGACGAGGAATAGAACTCTGTGATTGCGTCTCTATGTATCTGG
TGTACTAATACGAACAGGTGGTCTCGAGAAATATAGGAAACAATCCAATG
AGGAACAAGTTGAATAACAGCTGATCGACATGCGCGTGTTGCCCATAACT
GCACATCTTTTCTCACGATATCGGCAGGAAGTCGAAGGAAATCTCGGCGG
CGCAATCTACAACCTTGGCGCATTCAGCATCTCAAGCAATGCTTCATTTA
CAAACAACTGGAGCTCGGTGCGTTTCATAGCGCCGTAAAATTATACCATG
AATCCCACGGGCCTAACGCTAAAAACGAGAGATGACTCGTTGTCGCTCCA
CAGACAATCACTTCAACCCGTCTTACACGACATTATCATTTGGTTTCGGC
CACCCACAGGCTGGGGCTATCTACAATGGCGCCACCGGGGTGTTTGAGTT
CCTCGATGGATCTTTTGCTACTTTCACTGAGAATAGGTCATCTGACGCCA
GGGGCGGGGCCTTGACGAACGCCGTTGGGGGTGCCATGACGTTCACTGGC
GGTGCCAAATTTACCGATAATTATTCCGAGGGTGACGGGGGCGCCATCGG
CAACATGGGCTTCCTCAGGTGGAGAGCGCACGAGCCTACCAATTTTACAC
GTTTTGATTCTAAGCGGATGTGCATCGGGGATCTCTTGTCGATTCAAGAC
AAAGTGCTGACGATATAGTGCATGATAAACATACTATGCCGCCTGATTAA
CCTCAAAATGTACAGTTGAGCCTGTCGCATTTCGGGTTGCAACCGCACAC
GCGCGGCCTCTGTCTTGCAATTTATAAAAGGGTGGTAGTTATTGGCGTCG
ATTTTAGTCCGTATGCTCTTTCGTCGCTTCACTTCTGCGCCTTTTCAGCA
TCTCCAAGTCAGCAGTCTTTGTGGAAAACAGAGCTTCCGGTAGCGGTGGT
GCTATTTACAACTCGTACACTGCCGATCTGAACCTCCCAGACAACGCCGT
ATTTGAGGACAATACCATCTACGATGTGAGTTACCATTGTAACGCAAATT
TTCTGGCCATCCAAAAATCTTTAAGCTGTGCACGCTCCTCCTTCAACGCT
GTAGAAATGCGATGGCAGTGGGGGGGGGGGAGGGGGTAAGGAGTGAGATA
TTAAATTGCAGAAAAACTAGTTTTGCCGCAAGTTAGCAACTGCGGGGAAA
GTGTCGAACGCAAACACGATTAATTATGGTCTGGTTCCGAGGAACTATAT
TTATTTGCGCCACCAAGTCGCCAAACAATCCTGGTCGAAGTTTTCGACCG
CCGGAAACCTCTTCACGTAGAAATCATTTTTTCTACCCCAGAGCTACGAG
CACTGATAAAATTGGTTTTTCTACCTCCCTCGCATCGCCGGTGCCACTCC
TTTCTGCACCGCTTGCTTTGGGCGTAATGACGTTCGCAAATGGGCTTATA
AAGTGGGAGGACTGCGAAGATATATATATGGAAACCGAGGACAGCTTTGA
GTGTCTTCCTTAACCGGCGACAACGCGTCACGATTGTCATTGCAGGCAAG
AGAGTTCATGTCGAGGCATAATGCTCCTTCTCATGACGAATAGTAACTAA
AAGGGAGCGCGTAAAAAAAGTCCCGGTTCGAAGGAAGAAGCTGTCCAATA
TTATTGTTACTTTCTAGGGTATAACATCTATGGTAAGAATTGGAGGGATG
CGTAGAGCAGGGGATAATTGCACTCTAAATATATGTACATATATTTAGTA
ACACCTCAATAATGGGTGAAAACGTGCGACGTATGATCTCACATGATGCT
TAGTGCGAAGGCGACTTGTGCGCAGTAGGCCAGTCATTGACCCACGCCAG
ATACTTACCCAAAGCAGCAGTGTTACTAGGATTCCCAGCTGCGACACTAG
CCGCTGATGGGTTCGTGACTGTGACGGGCGCTAAGTTAGTAGATGTGAAA
ATGGTGTATAACGCTTAGGCCAACAGGCCTTAGATAGGCGTACTTTCAAG
GATAGCTGGAAGGGCAGAATGCTAAGTTTGACAGGCAAAATGTTCGAGGT
TGGAAAACACTCTTGGATTTCGTCATAATAACCGGAGTCGACTTCGTTTG
GTGCGATGATGGTGGTGGTGTCGAGGGGTGGCTCACGATATTCGTCGATA
CTTGCTAGGCTCTTGGCCGTGGAAGGTTGCCTCTACCTGATTATGTATCG
GCGTTTTGTTGTAAGCAGTATGATGTATATGCTGTGATATATCACCGTGT
TTTCCGGGTGCATACACATGGAGGGCGTAGCGTGCGCGGGGATATGGTCC
CCATCTAAGACCGTCGTACGTAACTATAATAAAGACTTGGGGCATATTTT
TGTGCGTACTGCACGCTCTAGCGTGGCCTCTTGTGGAATTTACGTTGTGA
ACGGGGGCCTTGGTGAGGAGAGTGGGAAGAGACACGAGTCCTTCAGGAAT
CCATGAGCACATGAACTCGAGTGCGTGGCGGGTACGTGGTGTGTTCAGGG
ACAAGCCGAATCTCGGTGCTTGAAGATTACCGGGCTGTTCATGGTTTGTG
TAAAGGGTGGGGTGTTTTGCAGTTCAGTGATCTCTCTAGATATATATACT
GAACAAGACCGCAAAGGCACACACAACAGTAGCGCGTCGGGCATTATTAC
GACTTTGAATATTGCCCAGCTCCCGGTAATGCCGTCAATATAGTGCTAAT
GGACCGCATGGTGAGTATTGATAATTTTTTCTAGCGTGCACGGTATCCGT
TGGTAACGTCGCTCAAGCGATAGGAGGAGTAATAATCTCAACGCATTACA
TCACGCACCATTCCAAAGACTGTACATCTTGAAGCTACAGAGGTTTTCGC
GTGCCGGCGAATTGATTGGCTTGGCGACAAATGGGATGCTGGTAACCGCA
CAATCTTTTATGTTGAGTCTGGCCAAAGTTATGCCTAACGAATATCACCA
C
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Coding sequence (CDS) from alignment at H-elongata_contig13785:1639..5389+

>mRNA_H-elongata_contig13785.2658.1 ID=mRNA_H-elongata_contig13785.2658.1|Name=mRNA_H-elongata_contig13785.2658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig13785:1639..5389+ (Himanthalia elongata Himel1 dioecious)
ATGACTGACTGCGGAAACAGGATGACTGACTGCGGAAACAGGGAAGTCGA
AGGAAATCTCGGCGGCGCAATCTACAACCTTGGCGCATTCAGCATCTCAA
GCAATGCTTCATTTACAAACAACTGGAGCTCGGAAGTCGAAGGAAATCTC
GGCGGCGCAATCTACAACCTTGGCGCATTCAGCATCTCAAGCAATGCTTC
ATTTACAAACAACTGGAGCTCGGCTGGGGCTATCTACAATGGCGCCACCG
GGGTGTTTGAGTTCCTCGATGGATCTTTTGCTACTTTCACTGAGAATAGG
TCATCTGACGCCAGGGGCGGGGCCTTGACGAACGCCGTTGGGGGTGCCAT
GACGTTCACTGGCGGTGCCAAATTTACCGATAATTATTCCGAGGGTGACG
GGGGCGCCATCGGCAACATGGGCTTCCTCAGGCTGGGGCTATCTACAATG
GCGCCACCGGGGTGTTTGAGTTCCTCGATGGATCTTTTGCTACTTTCACT
GAGAATAGGTCATCTGACGCCAGGGGCGGGGCCTTGACGAACGCCGTTGG
GGGTGCCATGACGTTCACTGGCGGTGCCAAATTTACCGATAATTATTCCG
AGGGTGACGGGGGCGCCATCGGCAACATGGGCTTCCTCAGCATCTCCAAG
TCAGCAGTCTTTGTGGAAAACAGAGCTTCCGGTAGCGGTGGTGCTATTTA
CAACTCGTACACTGCCGATCTGAACCTCCCAGACAACGCCGTATTTGAGG
ACAATACCATCTACGATCATCTCCAAGTCAGCAGTCTTTGTGGAAAACAG
AGCTTCCGGTAGCGGTGGTGCTATTTACAACTCGTACACTGCCGATCTGA
ACCTCCCAGACAACGCCGTATTTGAGGACAATACCATCTACGATTGGGAG
GACTGCGAAGATATATATATGGAAACCGAGGACAGCTTTGAGTGTCTTCC
TTAATGGGAGGACTGCGAAGATATATATATGGAAACCGAGGACAGCTTTG
AGTGTCTTCCTTAA
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