mRNA_H-elongata_contig137764.2653.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137764.2653.1
Unique NamemRNA_H-elongata_contig137764.2653.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137764.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137764contigH-elongata_contig137764:732..1364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137764.2653.1prot_H-elongata_contig137764.2653.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137764 732..1161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.3553078-CDS-H-elongata_contig137764:731..10091622929818.3553078-CDS-H-elongata_contig137764:731..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137764 732..1009 +
1691679169.5725598-CDS-H-elongata_contig137764:731..10091691679169.5725598-CDS-H-elongata_contig137764:731..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137764 732..1009 +
1622929818.3725886-CDS-H-elongata_contig137764:1148..11611622929818.3725886-CDS-H-elongata_contig137764:1148..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137764 1149..1161 +
1691679169.5844612-CDS-H-elongata_contig137764:1148..11611691679169.5844612-CDS-H-elongata_contig137764:1148..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137764 1149..1161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.3888896-UTR-H-elongata_contig137764:1161..13641622929818.3888896-UTR-H-elongata_contig137764:1161..1364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137764 1162..1364 +
1691679169.5967312-UTR-H-elongata_contig137764:1161..13641691679169.5967312-UTR-H-elongata_contig137764:1161..1364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137764 1162..1364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137764.2653.1

>prot_H-elongata_contig137764.2653.1 ID=prot_H-elongata_contig137764.2653.1|Name=mRNA_H-elongata_contig137764.2653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
PSVPATSVVAKAAASSGILVTATAPAPASTCHIVASTSRAAAAGAIVSSP
SVGTNGARLLSTPSSAAPVAASAATKMYSSTPSSFSSTATDTQLGP*
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mRNA from alignment at H-elongata_contig137764:732..1364+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137764.2653.1 ID=mRNA_H-elongata_contig137764.2653.1|Name=mRNA_H-elongata_contig137764.2653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig137764:732..1364+ (Himanthalia elongata Himel1 dioecious)
CCCTCGGTTCCTGCAACCTCCGTTGTAGCGAAAGCGGCGGCCAGCTCCGG
CATCCTGGTCACTGCAACCGCGCCCGCGCCAGCCTCTACATGCCACATCG
TCGCTTCCACTAGTCGTGCGGCTGCTGCAGGCGCGATCGTTTCCTCGCCT
TCGGTCGGTACCAATGGTGCGAGGCTCCTTTCAACTCCCTCCTCTGCCGC
GCCCGTCGCCGCATCAGCAGCCACGAAGATGTACTCTTCGACTCCTTCTT
CCTTCTCTTCCACCGCCACCGACACACAGCCACCGTCACATCCACAGCCG
CTGCGGACGCCTCCACCGCCTCGGCCACTAACACCACCGTCGATGGCGCA
AGACCTTGTACCTTTGCTCATCGCTACAGCTAGGCTGTCCGCTGGAGCCG
TGGCTGGTCGACAAAAGGCTCGGGCCATAGCCTCATGGATCCTCGCGGAA
AGCGCCCGGTTTAGGACGAAGGATGAGTGCCACCGAAGTTTTGCCGTCTC
TTGTCCCCGTGCCGCTGCTAACTGATCGCCCTCCAGATGCCCTCGCTTGG
GCACCCGGTGGGTCGCGACGGTCTGCCCTTTTAGAGTGGCCCTCTTGCAC
GTCCTACCATGTCCTACCTGTCATAATTCTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig137764:732..1364+

>mRNA_H-elongata_contig137764.2653.1 ID=mRNA_H-elongata_contig137764.2653.1|Name=mRNA_H-elongata_contig137764.2653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig137764:732..1364+ (Himanthalia elongata Himel1 dioecious)
CCCTCGGTTCCTGCAACCTCCGTTGTAGCGAAAGCGGCGGCCAGCTCCGG
CATCCTGGTCACTGCAACCGCGCCCGCGCCAGCCTCTACATGCCACATCG
TCGCTTCCACTAGTCGTGCGGCTGCTGCAGGCGCGATCGTTTCCTCGCCT
TCGGTCGGTACCAATGGTGCGAGGCTCCTTTCAACTCCCTCCTCTGCCGC
GCCCGTCGCCGCATCAGCAGCCACGAAGATGTACTCTTCGACTCCTTCTT
CCTTCTCTTCCACCGCCACCGACACACACCCTCGGTTCCTGCAACCTCCG
TTGTAGCGAAAGCGGCGGCCAGCTCCGGCATCCTGGTCACTGCAACCGCG
CCCGCGCCAGCCTCTACATGCCACATCGTCGCTTCCACTAGTCGTGCGGC
TGCTGCAGGCGCGATCGTTTCCTCGCCTTCGGTCGGTACCAATGGTGCGA
GGCTCCTTTCAACTCCCTCCTCTGCCGCGCCCGTCGCCGCATCAGCAGCC
ACGAAGATGTACTCTTCGACTCCTTCTTCCTTCTCTTCCACCGCCACCGA
CACACAGCTCGGGCCATAGGCTCGGGCCATAG
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