mRNA_H-elongata_contig137745.2652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137745.2652.1
Unique NamemRNA_H-elongata_contig137745.2652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137745.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137745contigH-elongata_contig137745:355..1392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size296
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137745.2652.1prot_H-elongata_contig137745.2652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137745 357..1392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.2908297-CDS-H-elongata_contig137745:356..3821622929818.2908297-CDS-H-elongata_contig137745:356..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 357..382 -
1691679169.530985-CDS-H-elongata_contig137745:356..3821691679169.530985-CDS-H-elongata_contig137745:356..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 357..382 -
1622929818.3026145-CDS-H-elongata_contig137745:734..8341622929818.3026145-CDS-H-elongata_contig137745:734..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 735..834 -
1691679169.543071-CDS-H-elongata_contig137745:734..8341691679169.543071-CDS-H-elongata_contig137745:734..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 735..834 -
1622929818.3172657-CDS-H-elongata_contig137745:1224..13921622929818.3172657-CDS-H-elongata_contig137745:1224..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 1225..1392 -
1691679169.5542765-CDS-H-elongata_contig137745:1224..13921691679169.5542765-CDS-H-elongata_contig137745:1224..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137745 1225..1392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137745.2652.1

>prot_H-elongata_contig137745.2652.1 ID=prot_H-elongata_contig137745.2652.1|Name=mRNA_H-elongata_contig137745.2652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RSTWRSAEEFCYQKLPFEFWVYMKAEGTADDSDAKTVRNECLKPRSIDLV
QLITPEDWNTTIMDAAPGEILRETKRAASYLVRSPLDFEAMCSDDQVT
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mRNA from alignment at H-elongata_contig137745:355..1392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137745.2652.1 ID=mRNA_H-elongata_contig137745.2652.1|Name=mRNA_H-elongata_contig137745.2652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-elongata_contig137745:355..1392- (Himanthalia elongata Himel1 dioecious)
AGGTCAACGTGGCGCAGCGCGGAAGAGTTTTGCTATCAAAAGCTCCCCTT
CGAGTTCTGGGTCTACATGAAGGCGGAGGGAACGGCAGACGATTCCGATG
CCAAAACCGTTCGGAACGAGTGCCTCAAGCCGAGAAGTATCGACTTGGTC
CAGCTTATTACCCCGGAGGCGAGTGATGCGTGGGTAATGGCTGGCGTATA
TTATGCGTATATATGTAGTATCTCGACGTACTATACCTAGCGAGTAAATA
GTCAATACTGTACCCTCTTTTTTGTATCTTGCTCACGTTAAGGTATATCT
TCCTCACGATAAACCGGTTCACACGAGGCATCATCACACGTTAAAATGAG
ACAGATACAATTACTTGCTTGCTTGCGTAAGCAGAGGCAAGAACTTTTAG
CTCTCTCTCGGGACTTCGAGACCGGAAATCAAATTGGTTGCTTATATTAT
TAGTACTACTACTACTATAAAAGCACCTCGTTTGACACCCCCCCGCCCCC
TCCCTAACTGTGACTTGCTTATTATGCGTGCGCCTTCGGTAATGTAATGC
AATCAAAGGATTGGAATACGACAATCATGGACGCGGCACCCGGGGAGATC
TTGCGAGAGACCAAACGCGCAGCTTCCTACCTTGTCCGAAGCCCTCTTGA
TTTTGAAGGCAAGATGTGATATATTCTACCATAAGCACAACAACTGCAGA
AGTACTATTGTATTGTTTTTATTATAGGCGGTCCAGGATTGGGTTATATG
CCGTTTGCCAATACATTATTTCAACGTCACTCCCACATAGCAGCATCTCT
CTCGCGGATTCTATCGAACATCGACCATGGACCGGTTTTTTGGCTTTTTG
TTGCAGATTTTTAGCACTAAAAACGCACTATCAGTTATAGTAAATATAGC
TCTTCTTTTTATCTCGCCCGTCTCTTTTTAATATATATAACATATAACAT
ATATATATATATAATATGTCTAGTATATAATATGTGCTTCTTCTGTTTCG
ATGCCACCAGCCATGTGCTCCGATGACCAAGTCACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig137745:355..1392-

>mRNA_H-elongata_contig137745.2652.1 ID=mRNA_H-elongata_contig137745.2652.1|Name=mRNA_H-elongata_contig137745.2652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig137745:355..1392- (Himanthalia elongata Himel1 dioecious)
AGGTCAACGTGGCGCAGCGCGGAAGAGTTTTGCTATCAAAAGCTCCCCTT
CGAGTTCTGGGTCTACATGAAGGCGGAGGGAACGGCAGACGATTCCGATG
CCAAAACCGTTCGGAACGAGTGCCTCAAGCCGAGAAGTATCGACTTGGTC
CAGCTTATTACCCCGGAGAGGTCAACGTGGCGCAGCGCGGAAGAGTTTTG
CTATCAAAAGCTCCCCTTCGAGTTCTGGGTCTACATGAAGGCGGAGGGAA
CGGCAGACGATTCCGATGCCAAAACCGTTCGGAACGAGTGCCTCAAGCCG
AGAAGTATCGACTTGGTCCAGCTTATTACCCCGGAGGATTGGAATACGAC
AATCATGGACGCGGCACCCGGGGAGATCTTGCGAGAGACCAAACGCGCAG
CTTCCTACCTTGTCCGAAGCCCTCTTGATTTTGAAGGATTGGAATACGAC
AATCATGGACGCGGCACCCGGGGAGATCTTGCGAGAGACCAAACGCGCAG
CTTCCTACCTTGTCCGAAGCCCTCTTGATTTTGAAGCCATGTGCTCCGAT
GACCAAGTCACCCCATGTGCTCCGATGACCAAGTCACC
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