mRNA_H-elongata_contig137533.2641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137533.2641.1
Unique NamemRNA_H-elongata_contig137533.2641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: D8LMR9_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR9_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.520e-110
Identity = 165/180 (91.67%), Postives = 172/180 (95.56%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFK 543
            F   + +LNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEK+TKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQI+GRLQHVVD+EKV ITPDG++AVM LGQGDMRRVLNLLQSTHMAYQK  VDERHAYLCAAAPLKEDMEYIRNALLTASFK
Sbjct:  125 FKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQK--VDERHAYLCAAAPLKEDMEYIRNALLTASFK 302
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A835YQB5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB5_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.730e-81
Identity = 129/180 (71.67%), Postives = 150/180 (83.33%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFK 543
            F++   +LNASDDRGIDVVR QIKEFAGTKRLFSSGVKLVILDEADAMT+DAQFALRRVIE+ T+HTRFC+ICNYV KIIPALQSRCT+FRFAPL+P+QIR RL HV+  EKV  TP G QA+++LGQGDMRRVLNLLQSTHMA+ K  VDE   YL A APL  D++  +  L+T + +
Sbjct:   91 FSSMTLELNASDDRGIDVVRDQIKEFAGTKRLFSSGVKLVILDEADAMTSDAQFALRRVIERHTRHTRFCLICNYVGKIIPALQSRCTRFRFAPLRPDQIRSRLAHVIASEKVDATPAGEQAILNLGQGDMRRVLNLLQSTHMAHVK--VDEDTVYLTAGAPLVSDVDAAQQWLMTGNIR 268
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A7S3UU54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU54_HETAK)

HSP 1 Score: 248 bits (633), Expect = 4.290e-79
Identity = 124/180 (68.89%), Postives = 149/180 (82.78%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFK 543
            FA+ + +LNASDDRGIDVVR Q+KEFAGT+RLFSSGVKLV+LDEADAMT DAQFALRRVIEK+T+HTRFCMICNYVN++IPALQSRCT+FRFAPL+  Q+ GRLQHVV++E V +T DG QA++ LGQGDMRRVLNLLQ+T MAY    V +++ YL +  PL+EDM+ I   L     K
Sbjct:   82 FASMVLELNASDDRGIDVVRNQVKEFAGTRRLFSSGVKLVVLDEADAMTADAQFALRRVIEKYTRHTRFCMICNYVNRVIPALQSRCTRFRFAPLQHGQVVGRLQHVVEQEGVPLTEDGRQALLDLGQGDMRRVLNLLQATFMAY--GEVTKQNVYLTSGHPLEEDMDLIYQKLNNEDLK 259
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A6G0WP14_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP14_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.580e-75
Identity = 116/180 (64.44%), Postives = 147/180 (81.67%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFK 543
            +A+ + +LNASDDRGI+VVR QIKEFAGTK+LFSSG+KL+ILDEADAMTNDAQFALRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRF+PL   Q++ R++H+   E V +TPDG QAV+ LG GDMRR+LN+LQ+T+MA+    V+E + YLC   PL  D+  + N L T SF+
Sbjct:   85 YASMVLELNASDDRGINVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFSPLAEHQVKDRVEHIAKAENVNMTPDGFQAVLRLGGGDMRRILNILQATNMAHDV--VNEANVYLCTGNPLPADITAMCNWLWTESFE 262
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A485KIW1_9STRA (Aste57867_7874 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIW1_9STRA)

HSP 1 Score: 238 bits (606), Expect = 5.020e-75
Identity = 116/181 (64.09%), Postives = 146/181 (80.66%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFKV 546
            +A+ + +LNASDDRGI+VVR QIKEFAGTK+LFSSG+KL+ILDEADAMTNDAQFALRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRF+PL   Q++ R+ H+   E V +T DG QAV+ LG GDMRR+LN+LQ+T+MA+    VDE + YLC   PL  DM  + N L T +F++
Sbjct:   85 YASMVLELNASDDRGINVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFSPLAEHQVKDRIDHIAKLENVNMTADGFQAVLKLGGGDMRRILNILQATNMAHDV--VDESNVYLCTGNPLPSDMAAMCNWLWTDTFEI 263
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: M4BQG7_HYAAE (AAA domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQG7_HYAAE)

HSP 1 Score: 238 bits (606), Expect = 7.360e-75
Identity = 113/179 (63.13%), Postives = 143/179 (79.89%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASF 540
            + + + +LNASDDRGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD+MTNDAQF+LRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRFAPL   Q+ GR++H+ + EK+ +T DG +A++ LGQGDMRR+LN+LQ+T MAY    VDE + Y C   PL +D+E +   L    F
Sbjct:   88 YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLDESQVSGRVKHIAELEKLNMTDDGFKAILRLGQGDMRRILNILQATSMAYDV--VDEANVYFCTGNPLPKDIELVVQWLFNEKF 264
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A067CLZ0_SAPPC (AAA domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ0_SAPPC)

HSP 1 Score: 237 bits (604), Expect = 9.200e-75
Identity = 115/180 (63.89%), Postives = 145/180 (80.56%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASFK 543
            + + + +LNASDDRGI+VVR QIKEFAGTK+LFS G+KL+ILDEADAMTNDAQFALRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRF+PL+  Q+R R++H+   E V +T DG QAV+ LG GDMRR+LN+LQ+T MA+ +  V+E + YLC   PL  DM  + N L TA F+
Sbjct:   84 YQSMVLELNASDDRGINVVRDQIKEFAGTKKLFSDGIKLIILDEADAMTNDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFSPLEEHQVRDRVEHIAKLENVAMTADGFQAVLRLGGGDMRRILNILQATSMAHDE--VNESNVYLCTGNPLPADMTALCNWLWTAPFE 261
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: H3G8T3_PHYRM (AAA domain-containing protein n=5 Tax=Peronosporaceae TaxID=4777 RepID=H3G8T3_PHYRM)

HSP 1 Score: 237 bits (605), Expect = 9.550e-75
Identity = 113/179 (63.13%), Postives = 145/179 (81.01%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASF 540
            + + + +LNASDDRGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD+MTNDAQF+LRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRFAPL   Q+ GR++H+ + EK+ +T DG +A++ LGQGDMRR+LN+LQ+T MA+    V+E + YLC   PL +D+E +   L   SF
Sbjct:   90 YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVGGRVKHIAELEKLNMTEDGFRAILRLGQGDMRRILNILQATSMAHDV--VNEANVYLCTGNPLPKDIESVTQWLFNESF 266
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A484DYU8_BRELC (AAA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYU8_BRELC)

HSP 1 Score: 237 bits (604), Expect = 1.310e-74
Identity = 114/179 (63.69%), Postives = 146/179 (81.56%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASF 540
            +++ + +LNASDDRGIDVVR QIKEFAGTK+LFS GVKLVILDEAD+MTNDAQF+LRRVIEK+TK+ RFC+ICNYV+KIIPALQSRCT+FRFAPL   Q+  R++H+V  EK+ +T DG +A++ LGQGDMRR+LN+LQ+T MA++   V+E + Y+C   PL +D+E I   L   SF
Sbjct:   89 YSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLVILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNDSQVSDRVKHIVQLEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHEI--VNETNVYMCTGNPLPKDIELITQWLFNESF 265
[Close]
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Match: A0A2D4BMT8_PYTIN (Replication factor C subunit 5 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BMT8_PYTIN)

HSP 1 Score: 236 bits (602), Expect = 2.870e-74
Identity = 113/179 (63.13%), Postives = 145/179 (81.01%), Query Frame = 1 
Query:    4 FATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKARVDERHAYLCAAAPLKEDMEYIRNALLTASF 540
            + + + +LNASDDRGIDVVR QIKEFAGTK+LFSSGVKL+ILDEAD+MTNDAQF+LRRVIEK+TK+TRFC+ICNYV+KIIPALQSRCT+FRFAPL   Q++ R+QH+   E++ +T DG +A++ LGQGDMRR+LN++Q+T MAY    VDE + Y+    PL +D+E I   LL   +
Sbjct:   92 YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGVKLIILDEADSMTNDAQFSLRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLHENQVKDRVQHIAQLERLNMTEDGFKAILRLGQGDMRRILNIMQATSMAYDT--VDETNVYMTTGNPLPKDIETIVGWLLNEGY 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137533.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR9_ECTSI1.520e-11091.67AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YQB5_9STRA1.730e-8171.67P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UU54_HETAK4.290e-7968.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0WP14_9STRA2.580e-7564.44AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485KIW1_9STRA5.020e-7564.09Aste57867_7874 protein n=1 Tax=Aphanomyces stellat... [more]
M4BQG7_HYAAE7.360e-7563.13AAA domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A067CLZ0_SAPPC9.200e-7563.89AAA domain-containing protein n=4 Tax=Saprolegniac... [more]
H3G8T3_PHYRM9.550e-7563.13AAA domain-containing protein n=5 Tax=Peronosporac... [more]
A0A484DYU8_BRELC1.310e-7463.69AAA domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A2D4BMT8_PYTIN2.870e-7463.13Replication factor C subunit 5 n=2 Tax=Pythium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137533contigH-elongata_contig137533:184..1654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.5
Seed ortholog evalue5.2e-88
Seed eggNOG ortholog2880.D8LMR9
Preferred nameRFC5
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030554,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031348,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0035639,GO:0036094,GO:0042623,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0061860,GO:0065007,GO:0065009,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0090618,GO:0097159,GO:0097367,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0990@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication factor C
Ec32 orthologEc-02_003410.1
Exons4
Model size570
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137533.2641.1prot_H-elongata_contig137533.2641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137533 184..1654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.3580642-CDS-H-elongata_contig137533:183..3611622929817.3580642-CDS-H-elongata_contig137533:183..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 184..361 +
1691679169.010876-CDS-H-elongata_contig137533:183..3611691679169.010876-CDS-H-elongata_contig137533:183..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 184..361 +
1622929817.374874-CDS-H-elongata_contig137533:530..6901622929817.374874-CDS-H-elongata_contig137533:530..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 531..690 +
1691679169.0250182-CDS-H-elongata_contig137533:530..6901691679169.0250182-CDS-H-elongata_contig137533:530..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 531..690 +
1622929817.3881018-CDS-H-elongata_contig137533:876..9881622929817.3881018-CDS-H-elongata_contig137533:876..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 877..988 +
1691679169.0346174-CDS-H-elongata_contig137533:876..9881691679169.0346174-CDS-H-elongata_contig137533:876..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 877..988 +
1622929817.4013379-CDS-H-elongata_contig137533:1534..16541622929817.4013379-CDS-H-elongata_contig137533:1534..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 1535..1654 +
1691679169.04665-CDS-H-elongata_contig137533:1534..16541691679169.04665-CDS-H-elongata_contig137533:1534..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137533 1535..1654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137533.2641.1

>prot_H-elongata_contig137533.2641.1 ID=prot_H-elongata_contig137533.2641.1|Name=mRNA_H-elongata_contig137533.2641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
RFATQIEQLNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMT
NDAQFALRRVIEKFTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQ
IRGRLQHVVDKEKVVITPDGIQAVMHLGQGDMRRVLNLLQSTHMAYQKAR
VDERHAYLCAAAPLKEDMEYIRNALLTASFKVRDEAWML*
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mRNA from alignment at H-elongata_contig137533:184..1654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137533.2641.1 ID=mRNA_H-elongata_contig137533.2641.1|Name=mRNA_H-elongata_contig137533.2641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1471bp|location=Sequence derived from alignment at H-elongata_contig137533:184..1654+ (Himanthalia elongata Himel1 dioecious)
CGCTTCGCCACGCAAATCGAACAGCTCAACGCATCGGACGATCGAGGCAT
CGACGTTGTTAGGGGACAGATCAAGGAATTTGCTGGCACGAAACGCCTCT
TCAGCTCCGGAGTGAAGCTCGTCATCCTGGACGAAGCCGACGCAATGACA
AACGATGCGCAATTCGCCCTTCGCCGAGGTGAACATGGGTTTTATTGCTC
ACCATGTCCTTCGCAACCACACCCTGCACAGATTACAGTCTTTCCCACTC
GATTGCTCTTATCACTCACACGTCGGTCATTGGCGCGAGCAGATTTGACC
TATCTTGCTCCGCCCGCGTGCCGCCATCTCTTCTACCGTGACCAAAGTCA
TCGAGAAGTTCACCAAGCACACCCGCTTCTGCATGATCTGCAACTACGTG
AACAAGATTATCCCGGCCTTGCAGTCGCGGTGTACGAAGTTCCGATTCGC
CCCGCTCAAGCCGGAGCAGATCAGAGGGCGCCTACAGCACGTTGTGGATA
AGGAGAAGTGAGTGGAGACCAACTCTCACGGTCGCTCGTTGAGCGAAAAG
CCGAAGAAATTAGTTGTCCCCCCCCATGTCCCGAGCTGACATCCTGAGAG
AGAACGTCTTTGAGTCTATCCACTACATGTGGGAAATCGGGAATCGGTGA
CCTTCCCTCTTTTCCTCTTTCTGCTTTTATGTTGGTCGCACAGAGTCGTG
ATTACACCAGATGGCATCCAAGCCGTGATGCACCTGGGGCAGGGTGACAT
GCGGCGCGTCCTCAACCTCCTTCAGTCAACGCACATGGCGTACCAAAAGG
CACGTGTAACTAAAGCCGCTGTAGGTGCGCGCCGCGTCGATAGTTTCGTG
GGAAGTGAAGTGAAGTGCCTACGTGAACGGTCCATCATAACATTGCGCCA
GTTTCCTTGGATTATCGCACCGAAAGGATGAGCCCTGTCAGATATAAAAA
AGTTGACCCGAATCCCGTGTTGCCACGCCCTGGCGTTGACCATTTGCTGT
ATGCGTCTTTGTGTATGAGTGTATTTATTAAATTGTACATATTCGCGCAA
CCCATCCCTGACATACTAATATTCTATGCTGCTCGTATAAATCCTCTTTT
GTGGAGGACCAGTGATAGCTACCGTCACGATAACTTCTGAGAAGACGCGA
CATAGGGGACACGCTCTATCCACGCTATCTCTTAGAATAAGGATTGTTGA
CCCCTTCCATCTTCTTCCTCGCCTTTACTATGCTCTCCCGCATCACCCTC
CTCCCACCCCCCTGTGTGTGTGCCTTTTCTCTCTCCTATTGTGTCTCATT
TCCTCAACATGGACGTTTGTATGTCTCCGGTGCTTGCCGTCTCGACGTCA
GGTGGATGAGCGACACGCCTACTTGTGCGCCGCTGCGCCCTTAAAAGAAG
ACATGGAGTACATCCGCAATGCACTGCTGACAGCCTCGTTCAAGGTAAGG
GACGAGGCTTGGATGTTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig137533:184..1654+

>mRNA_H-elongata_contig137533.2641.1 ID=mRNA_H-elongata_contig137533.2641.1|Name=mRNA_H-elongata_contig137533.2641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig137533:184..1654+ (Himanthalia elongata Himel1 dioecious)
CGCTTCGCCACGCAAATCGAACAGCTCAACGCATCGGACGATCGAGGCAT
CGACGTTGTTAGGGGACAGATCAAGGAATTTGCTGGCACGAAACGCCTCT
TCAGCTCCGGAGTGAAGCTCGTCATCCTGGACGAAGCCGACGCAATGACA
AACGATGCGCAATTCGCCCTTCGCCGAGCGCTTCGCCACGCAAATCGAAC
AGCTCAACGCATCGGACGATCGAGGCATCGACGTTGTTAGGGGACAGATC
AAGGAATTTGCTGGCACGAAACGCCTCTTCAGCTCCGGAGTGAAGCTCGT
CATCCTGGACGAAGCCGACGCAATGACAAACGATGCGCAATTCGCCCTTC
GCCGAGTCATCGAGAAGTTCACCAAGCACACCCGCTTCTGCATGATCTGC
AACTACGTGAACAAGATTATCCCGGCCTTGCAGTCGCGGTGTACGAAGTT
CCGATTCGCCCCGCTCAAGCCGGAGCAGATCAGAGGGCGCCTACAGCACG
TTGTGGATAAGGAGAATCATCGAGAAGTTCACCAAGCACACCCGCTTCTG
CATGATCTGCAACTACGTGAACAAGATTATCCCGGCCTTGCAGTCGCGGT
GTACGAAGTTCCGATTCGCCCCGCTCAAGCCGGAGCAGATCAGAGGGCGC
CTACAGCACGTTGTGGATAAGGAGAAAGTCGTGATTACACCAGATGGCAT
CCAAGCCGTGATGCACCTGGGGCAGGGTGACATGCGGCGCGTCCTCAACC
TCCTTCAGTCAACGCACATGGCGTACCAAAAGGCACGTAGTCGTGATTAC
ACCAGATGGCATCCAAGCCGTGATGCACCTGGGGCAGGGTGACATGCGGC
GCGTCCTCAACCTCCTTCAGTCAACGCACATGGCGTACCAAAAGGCACGT
GTGGATGAGCGACACGCCTACTTGTGCGCCGCTGCGCCCTTAAAAGAAGA
CATGGAGTACATCCGCAATGCACTGCTGACAGCCTCGTTCAAGGTAAGGG
ACGAGGCTTGGATGTTATGAGTGGATGAGCGACACGCCTACTTGTGCGCC
GCTGCGCCCTTAAAAGAAGACATGGAGTACATCCGCAATGCACTGCTGAC
AGCCTCGTTCAAGGTAAGGGACGAGGCTTGGATGTTATGA
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