mRNA_H-elongata_contig137429.2638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137429.2638.1
Unique NamemRNA_H-elongata_contig137429.2638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137429.2638.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   25 YLLSDKDPSVVRDFTVITGQGKHSRRPFEPILRPVAQDMFLEEFDP 162
            YL+++KDPSVV  FT+ITG+G+HSR+ FEP+LRPVAQDM LEEF+P
Sbjct: 1024 YLVAEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEP 1069
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BLAST of mRNA_H-elongata_contig137429.2638.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.300e-15
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   34 SDKDPSVVRDFTVITGQGKHSRRPFEPILRPVAQDMFLEEFDP 162
            ++KDPSVV  FT+ITG+G+HSR+ FEP+LRPVAQDM LEEF+P
Sbjct:    8 AEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEP 50
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BLAST of mRNA_H-elongata_contig137429.2638.1 vs. uniprot
Match: A0A835YST6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   25 YLLSDKDPSVVRDFTVITGQGKHSRRPFEPILRPVAQDMFLEEFDP 162
            Y  + +D SVV DFT+ITG G+HS+  F+P +RP  Q M LEE DP
Sbjct: 1036 YQSTGQDVSVVNDFTIITGIGRHSKLAFKPTVRPTVQAMLLEEQDP 1081
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BLAST of mRNA_H-elongata_contig137429.2638.1 vs. uniprot
Match: W7U458_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U458_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.870e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   22 VYLLSDKDPSVVRDFTVITGQGKHSRRPFEPILRPVAQDMFLEEFDP 162
            +Y  + K   V++DF  ITG G++S  PFEP+LRP  Q M  E+FDP
Sbjct: 1081 MYEQTGKREGVIKDFVFITGVGRNSEMPFEPVLRPAMQRMLNEDFDP 1127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137429.2638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNR8_9PHAE2.050e-1571.74Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIK6_ECTSI4.300e-1572.09Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YST6_9STRA3.900e-754.35Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
W7U458_9STRA1.870e-648.94Pentatricopeptide repeat containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137429contigH-elongata_contig137429:1586..1747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.9821715-CDS-H-elongata_contig137429:1585..17471622929816.9821715-CDS-H-elongata_contig137429:1585..1747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137429 1586..1747 +
1691679168.7834496-CDS-H-elongata_contig137429:1585..17471691679168.7834496-CDS-H-elongata_contig137429:1585..1747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137429 1586..1747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137429.2638.1prot_H-elongata_contig137429.2638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137429 1586..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137429.2638.1

>prot_H-elongata_contig137429.2638.1 ID=prot_H-elongata_contig137429.2638.1|Name=mRNA_H-elongata_contig137429.2638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MTYFHLFVYLLSDKDPSVVRDFTVITGQGKHSRRPFEPILRPVAQDMFLE
EFDP
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mRNA from alignment at H-elongata_contig137429:1586..1747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137429.2638.1 ID=mRNA_H-elongata_contig137429.2638.1|Name=mRNA_H-elongata_contig137429.2638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig137429:1586..1747+ (Himanthalia elongata Himel1 dioecious)
ATGACATATTTTCATTTATTTGTGTATTTATTGTCAGACAAAGACCCATC
GGTCGTCCGAGACTTTACGGTCATTACCGGCCAAGGCAAGCATAGCCGGA
GGCCGTTCGAACCTATCCTGAGGCCAGTGGCGCAAGACATGTTCCTTGAG
GAGTTCGATCCT
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Coding sequence (CDS) from alignment at H-elongata_contig137429:1586..1747+

>mRNA_H-elongata_contig137429.2638.1 ID=mRNA_H-elongata_contig137429.2638.1|Name=mRNA_H-elongata_contig137429.2638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig137429:1586..1747+ (Himanthalia elongata Himel1 dioecious)
ATGACATATTTTCATTTATTTGTGTATTTATTGTCAGACAAAGACCCATC
GGTCGTCCGAGACTTTACGGTCATTACCGGCCAAGGCAAGCATAGCCGGA
GGCCGTTCGAACCTATCCTGAGGCCAGTGGCGCAAGACATGTTCCTTGAG
GAGTTCGATCCTATGACATATTTTCATTTATTTGTGTATTTATTGTCAGA
CAAAGACCCATCGGTCGTCCGAGACTTTACGGTCATTACCGGCCAAGGCA
AGCATAGCCGGAGGCCGTTCGAACCTATCCTGAGGCCAGTGGCGCAAGAC
ATGTTCCTTGAGGAGTTCGATCCT
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