mRNA_H-elongata_contig137342.2626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137342.2626.1
Unique NamemRNA_H-elongata_contig137342.2626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A6H5KXU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 2.290e-95
Identity = 155/194 (79.90%), Postives = 167/194 (86.08%), Query Frame = 3
Query:  156 KVGTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGTRVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQPAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDEDDF 737
            KVGTSGATM PRRGT CAALFDDG GPAWYRA+V+GSTP+G RV YVDHGN ATVK+S LRPLDSSYFAF PQARECV+AF RVPSLEEEFGRDAAM LN LGWGK+LLGRALG+DADGRLMMALYES DS S+NETLVAQGVAR+   +      QPAKEMV +LRESQE AHKSR  +WRYGDC SDDEDDF
Sbjct:  748 KVGTSGATMEPRRGTLCAALFDDGNGPAWYRAKVLGSTPVGMRVLYVDHGNTATVKSSSLRPLDSSYFAFRPQARECVMAFMRVPSLEEEFGRDAAMGLNALGWGKELLGRALGRDADGRLMMALYESEDSESLNETLVAQGVARVASNADKLAASQPAKEMVARLRESQEHAHKSRANMWRYGDCQSDDEDDF 941          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A835YK22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK22_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.980e-54
Identity = 112/206 (54.37%), Postives = 140/206 (67.96%), Query Frame = 3
Query:  156 KVGTSGATMAPRRGTQCAALFD--DGKGPAWYRAQVIGSTPLGTRV--RYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDAD-GRLMMALYESNDSNSINETLVAQGVARLEKTS-KIFTTCQP--------AKEMVDKLRESQEIAHKSRTALWRYGDCCSDDED 731
            +VGT GA M  RRGT CAALFD  DG G  W+RA++  +   GT V  RY+DHGNCATV A +LRPLD +YF  PP A+ECVLA+TRVPSL EE+G DAA  L ++ WGK+L  R LG+DA  G+ M+ALYE  +  SI E +V +G+ARL K + K     Q         A E+V +L+E+QE AHK R A+WRYGDC SDDE+
Sbjct:  820 QVGTGGAPMEHRRGTTCAALFDAGDGAGECWFRARIEAAARGGTAVTVRYIDHGNCATVPAGKLRPLDRTYFDLPPLAKECVLAYTRVPSLTEEWGGDAAGLLQEMAWGKELKARMLGRDATTGKPMVALYEEGEQ-SIQEIMVGEGLARLAKRAEKAVAAAQQSGAPAAXAAAELVARLKEAQEAAHKGRVAMWRYGDCTSDDEN 1024          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A2P4YKI6_9STRA (Nuclease n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKI6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.460e-39
Identity = 86/192 (44.79%), Postives = 116/192 (60.42%), Query Frame = 3
Query:  162 GTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGT-RVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTS--KIFTTCQPAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDE 728
            G +G     RR   CAALFDDG GPAW RA+V    P G+ RVR++D+GN  TV A++LRPLD+    FPPQA+E V A+ +  +   EFG DAAM + ++ WGK L  R  G D + R+ ++LY   D  S+ ETL+  G+ R ++ +   +    QP   +VD L  +QE A K R  LW+YGD  SDDE
Sbjct:    9 GLAGKAFEVRRNAVCAALFDDGNGPAWNRAKVEYVHPDGSARVRFLDYGNDTTVTANRLRPLDADVLQFPPQAKEAVFAWIKPLAATAEFGTDAAMRIGEVAWGKTLSCRIHGTDDNNRMQVSLYLP-DGKSVAETLMEAGLLRTDRKALRHVLPYQQP---VVDGLINAQETAKKQRRCLWQYGDIESDDE 196          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A662WVM6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVM6_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.040e-37
Identity = 85/190 (44.74%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  162 GTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGT-RVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQPAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDE 728
            G +G     RR   CAALF+DG  PAW RA+V    P G+ RVR++D+GN ATV  ++LRPLD+    FPPQA+EC LAF +     EEFG DAA+ L ++ WG+ L  R  G D  GR+ +++Y   D  S+ E L+  G+ R ++ +  F      K +VD L  +QE A K R  LW+YGD  SDDE
Sbjct:  184 GLAGKAFEVRRNAVCAALFEDGGEPAWNRAKVEFVHPDGSARVRFLDYGNQATVGPNRLRPLDADVLQFPPQAKECTLAFIKSLPATEEFGSDAAIRLGEVAWGQNLSCRVHGTDDHGRMQVSIYLP-DGKSVGENLLEGGLLRTDRKALRFVLPHQ-KPIVDGLVNAQETAKKQRRCLWQYGDIESDDE 371          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A3F2RSG8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSG8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.300e-36
Identity = 88/191 (46.07%), Postives = 116/191 (60.73%), Query Frame = 3
Query:  162 GTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGT-RVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQP-AKEMVDKLRESQEIAHKSRTALWRYGDCCSDDE 728
            G +G T   RR   CAALFDDG GPAW RA+V    P G+ RVR++D+GN  TV  ++LRPLD+    FPPQA+E   AF +  +  EEFG DAAM + ++ WGK L  R    D  GRL ++LY   D  S++E+LV  G+ R ++ +  F   QP  K +VD L  +Q+ A   R  LW+YGD  SDDE
Sbjct:  687 GLAGKTFEVRRNAVCAALFDDGSGPAWNRAKVEYVHPDGSARVRFLDYGNETTVTPNRLRPLDADVLQFPPQAKEAAFAFIKPLAATEEFGSDAAMRIGEVAWGKTLSCRVHSTDDHGRLQVSLYLP-DGKSVSESLVEAGLLRTDRKALRFV--QPYQKPVVDGLVNAQDTAKAQRRCLWQYGDIESDDE 874          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A7S1C8D4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8D4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.030e-33
Identity = 77/198 (38.89%), Postives = 115/198 (58.08%), Query Frame = 3
Query:  153 KKVGTSGATMAPRRGTQCAALFDDGKGPAWYRAQV---IGSTPLGT--RVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQPAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDED 731
            ++VGT+GA   P++G   AALFDDG GPAWYRA+V    G    G    V YVD+GN   V  ++LRPLD+   A PP ARECV AF RVP+L  E+G +AA   ++  +G+++L +   +D     ++ L++     S +E L+++G+AR+ K           K +V KL ++QE A      ++RYGD    D++
Sbjct:  183 EEVGTAGAPCEPKKGALLAALFDDGSGPAWYRARVNAVTGDAAAGQTYEVTYVDYGNKDAVPIARLRPLDADLAAIPPLARECVTAFLRVPALGAEYGNEAAGCFHETVFGRRVLSKTHYRDESNNAVVTLFDEESDLSASEVLLSEGLARVSKRDTRRLRRGDDKALVAKLLKAQEEAKAGHRNMFRYGDPGDSDDE 380          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: W7TNM8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNM8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.570e-33
Identity = 82/221 (37.10%), Postives = 127/221 (57.47%), Query Frame = 3
Query:  120 KTSPCLVALGLKKVGTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPL----GTRVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNS-------INETLVAQGVARLEKT-----SKIFTTCQPAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDEDD 734
            K    + ALG +    +  +  PR+G   AALFDDG GP WYRA+V     +    G  V ++D+GN A V  SQ+R LD+S+ A P QA+   LAF R P L+++FG +AA++ + L +GK L  R  G +  G L+++L E  + +S        N+ +V +G+ARL K      SK+  +   A  +V++++E+QE+A + R  +WRYGD    D++D
Sbjct:  712 KVGEKMKALGAEGRSENAISFEPRKGNIVAALFDDGSGPLWYRARVEDKLSMSNGGGFMVSFIDYGNKAIVGRSQVRTLDASFTAMPAQAKRAKLAFLRAPGLKDDFGHEAAVAFSRLAYGKVLRARVFGLER-GTLLVSLQEKGEDSSPATSMKTFNQLMVEEGLARLSKQADGVISKLGKSS--AVNLVEEMKEAQELARRGRIGMWRYGDVADSDDED 929          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A067C0V4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0V4_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 4.580e-33
Identity = 79/192 (41.15%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  159 VGTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGTRVRYVDHGNCATVKASQLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQP-AKEMVDKLRESQEIAHKSRTALWRYGDCCSDDED 731
            VGT G T   ++G  CAALFDDG+GPAW RA++   +  G +V +VDHGN   V  ++LRPLD +   +PPQA+ CVL F +      E+  DAA   ND  WGK L     G D +GR M+ L   +   S+ E L+ QG+A++++ +      +P  K +VDKL  + + A + R  LW YGD  SD +D
Sbjct:  677 VGTDGKTFEMKKGVLCAALFDDGQGPAWNRARIESLSVRGVQVFFVDHGNTEFVPTTRLRPLDPALAQYPPQAKPCVLGFIKPFGDGAEYAEDAAHVFNDTAWGKTLTAILHGHDGNGRQMVTLQLQD--KSVAEILLEQGIAKVDRAA--IKRAEPYQKVVVDKLLAALDHAKRRRLCLWHYGDAESDLDD 864          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: A0A7S2H067_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H067_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.970e-31
Identity = 82/205 (40.00%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  153 KKVGTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGTRVRYVDHGNCATVKAS-QLRPLDSSYFA--FPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYE-SNDSNSINETLVAQGVARLEKTSKIFTTCQ------PAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDEDDF 737
            +K GT GA    + G   AALFD     +WYRA++         V Y+DHGN   VKAS  LRPLD        PP A+E  L  T V S E+++G DAA  LN L WGK+L  R+   + +G++ + L + S+D  SINE +VA G+AR+ K +++    +        K++  KL  +QE A  SR  +WRYGD   DD++DF
Sbjct:   14 EKNGTKGAPCDIKVGKVVAALFDG----SWYRAKITEKKDKEVEVLYIDHGNLDVVKASTHLRPLDDELGTDKIPPVAKEAQLICTIVRSTEDDYGFDAARELNSLAWGKELTARSH-CELEGKMHVTLIDPSDDKTSINEKMVAAGLARVPKPAEVNHLAKRLRSGGDVKKLAAKLTTAQEGARTSRAGMWRYGDIGDDDDEDF 213          
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Match: K0R2A1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2A1_THAOC)

HSP 1 Score: 134 bits (338), Expect = 1.090e-30
Identity = 83/198 (41.92%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  162 GTSGATMAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLG-TRVRYVDHGNCATVK-ASQLRPLDSSYFA--FPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKLLGRALGKDADGRLMMALYESN-DSNSINETLVAQGVARLEKTSKIFTTCQ---PAKEMVDKLRESQEIAHKSRTALWRYGDCCSDDED 731
            GTSGA    + G   AALF DG   +WYRA++I  T  G  +V +VDHGN +TV  ASQLRPLD +      P  A+E VLA T+V SLEEE G DAA  L  + WGK L  R  G ++DG+L++ L+E + +++SINE LV +G+AR+    +++   +      ++  +L+ +Q+ A K R  +W YG+   +DE+
Sbjct:  734 GTSGAPCEIKPGKVVAALFKDGSTSSWYRAKIIEQTDKGKVKVLFVDHGNVSTVSPASQLRPLDMALGTDQIPAVAKEAVLAMTKVRSLEEEDGLDAARCLQGIAWGKDLKARLHG-ESDGQLLVTLFEGDAETSSINEKLVIEGLARVPNRKEMYDAGRGNSSLNKLKKELQSAQDKARKMRKGIWIYGEIPEEDEE 930          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137342.2626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXU2_9PHAE2.290e-9579.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YK22_9STRA2.980e-5454.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P4YKI6_9STRA2.460e-3944.79Nuclease n=1 Tax=Phytophthora palmivora var. palmi... [more]
A0A662WVM6_9STRA1.040e-3744.74Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A3F2RSG8_9STRA1.300e-3646.07Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
A0A7S1C8D4_9STRA3.030e-3338.89Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
W7TNM8_9STRA3.570e-3337.10Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A067C0V4_SAPPC4.580e-3341.15Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2H067_9STRA3.970e-3140.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0R2A1_THAOC1.090e-3041.92Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137342contigH-elongata_contig137342:2..1750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue3.3e-79
Seed eggNOG ortholog2880.D8LGL1
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009266,GO:0009408,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010371,GO:0010372,GO:0010467,GO:0010468,GO:0010494,GO:0010565,GO:0010605,GO:0010629,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016070,GO:0016071,GO:0016101,GO:0016102,GO:0016114,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019439,GO:0019747,GO:0019752,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034605,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046394,GO:0046483,GO:0046686,GO:0046700,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.gamete generation
EggNOG OGsCOG1525@1,KOG2039@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size1180
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137342.2626.1prot_H-elongata_contig137342.2626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137342 442..1571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.6123872-UTR-H-elongata_contig137342:1..4411622929815.6123872-UTR-H-elongata_contig137342:1..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137342 2..441 -
1691679168.3032866-UTR-H-elongata_contig137342:1..4411691679168.3032866-UTR-H-elongata_contig137342:1..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137342 2..441 -
1622929815.6723835-UTR-H-elongata_contig137342:1571..17501622929815.6723835-UTR-H-elongata_contig137342:1571..1750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137342 1572..1750 -
1691679168.3482325-UTR-H-elongata_contig137342:1571..17501691679168.3482325-UTR-H-elongata_contig137342:1571..1750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137342 1572..1750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.6287696-CDS-H-elongata_contig137342:441..5551622929815.6287696-CDS-H-elongata_contig137342:441..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 442..555 -
1691679168.3169682-CDS-H-elongata_contig137342:441..5551691679168.3169682-CDS-H-elongata_contig137342:441..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 442..555 -
1622929815.6425095-CDS-H-elongata_contig137342:810..9181622929815.6425095-CDS-H-elongata_contig137342:810..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 811..918 -
1691679168.3261292-CDS-H-elongata_contig137342:810..9181691679168.3261292-CDS-H-elongata_contig137342:810..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 811..918 -
1622929815.6553757-CDS-H-elongata_contig137342:1232..15711622929815.6553757-CDS-H-elongata_contig137342:1232..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 1233..1571 -
1691679168.3392918-CDS-H-elongata_contig137342:1232..15711691679168.3392918-CDS-H-elongata_contig137342:1232..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137342 1233..1571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137342.2626.1

>prot_H-elongata_contig137342.2626.1 ID=prot_H-elongata_contig137342.2626.1|Name=mRNA_H-elongata_contig137342.2626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MAPRRGTQCAALFDDGKGPAWYRAQVIGSTPLGTRVRYVDHGNCATVKAS
QLRPLDSSYFAFPPQARECVLAFTRVPSLEEEFGRDAAMSLNDLGWGKKL
LGRALGKDADGRLMMALYESNDSNSINETLVAQGVARLEKTSKIFTTCQP
AKEMVDKLRESQEIAHKSRTALWRYGDCCSDDEDDF*
back to top

mRNA from alignment at H-elongata_contig137342:2..1750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137342.2626.1 ID=mRNA_H-elongata_contig137342.2626.1|Name=mRNA_H-elongata_contig137342.2626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1749bp|location=Sequence derived from alignment at H-elongata_contig137342:2..1750- (Himanthalia elongata Himel1 dioecious)
TACGGTGACAAAAAGGTGTGGATGTTCGGAGAGTTAGAATGAGCCTAAAG TCTTTTAAATAAAAATACCTCACACAAAAAACAGTTGACGAAGTTTTCCA ATCCTTGTAATGCTTTTAAAAAACATCTCCTTGTTTGGTGGCCCTTGGCT TAAAAAAGGTGGGCACGTCCGGAGCGACGATGGCTCCTCGCAGAGGCACC CAGTGCGCCGCCCTTTTTGACGATGGTAAGGGCCCTGCGTGGTACAGGGC CCAGGTGATCGGGTCGACGCCCTTGGGCACAAGGGTCCGGTATGTGGATC ACGGTAATTGTGCCACTGTAAAGGCGTCACAGCTGCGGCCGCTGGACTCG TCGTACTTTGCTTTTCCGCCTCAAGCAAGAGAGTGCGTGCTGGCCTTCAC ACGGGTTCCCTCGCTCGAGGAGGAGTTCGGGCGTGACGCAGCCATGAGCT TGAATGACCTTGGATGGGGAAAGAAGCTCCTGGGTCGCGCCCTCGGGAAG GACGCGGACGGTCGCCTTGTGAGAGAAGTCAATTTTCGTGTCTTGTTAGC GGAATCTATATCGCGACATTGTACGAGGAACTTGCGACGTAAACCACGAC TATCGGTCAAAGTAAAGTGGTAGTATTTGTGAAATGCTTTTGAATGCGTC GCACATAGACATGTGAAGGGGCGCCGATCGCGGTGCGTTACGACGGTAGT ATCGACCACGTTCCAATCCATGGACTGCAGAAGCAACATCCACAAGGAGG AACCAATGCCATAACGTTCACTGCCAATAAAAGCCGCCTACAATTTAGCA CCTTCCATAATCTGCCCCCGTTTCAACCTCAGATGATGGCGCTTTATGAG TCGAACGACTCTAATAGCATAAATGAGACCTTGGTAGCTCAAGGGGTGGC TCGTTTGGAAAAAACCTCCAAAATATTTACTACTTGCCAGGTGAGATGAT GAGGGGAGGAAATTAAGCGATGATATCGAAACCGTTTGGTTATCAGCGGA ACTGAAATATCCGTCTCTAGGAGGGGTCAACATCGGACCCTTGGAATATA CATCGCACTAAAAGTGATGTCGACATTACATTTTTCTTAGCTCTTTGTTT CTTCGCCACCCTTTCTCTGAAGTTTGTATTTTCCTTCTCTCTTTTGTCTT CCGTTCCCTTATTTTCTATTATGGCCGCGACTTTCCTCTTCGTAGCCCGC GAAGGAGATGGTCGATAAGCTGCGAGAATCACAGGAAATTGCGCACAAGA GTCGAACCGCTTTATGGCGCTACGGAGACTGTTGTTCAGACGACGAAGAT GATTTTTAAGGGCAAGACAATTTGTTCTTTTCCTTCGCCCTGATTCCCAT TCCCACCATCCAGTAAATGTTTATATTTTTATACACTTGTACAATCTATA GAAGAAGCAGGAAGAATATCTGATTTGTCCCTCGTATTTTGGGTCAATTG CGTCTGCCTGCAGGTGATGGTGCTTGCAGGAGAGATTGAACGGATTTATT CGTAAGAATAGAGTCAGTATGACAGTTTCGGCCGAGGCATAGATTATAAA TGTAAGCAGTAGGCACGGTGTGTTTAGGGCTATTTAAATCAGCTGCGATT CTGCTGATGCTGGTTTACGAATTGATTAGTGCCTTCTTGCTCTCTTGAGC TGACATCGGTGGTATAAAAATATACAATGGAGCATATGCAACCGGTCGAC CCGGTGGTGTAAGGGTCAAGCCGTCTTCCTTGATCCCCGGAAGTAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig137342:2..1750-

>mRNA_H-elongata_contig137342.2626.1 ID=mRNA_H-elongata_contig137342.2626.1|Name=mRNA_H-elongata_contig137342.2626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig137342:2..1750- (Himanthalia elongata Himel1 dioecious)
ATGGCTCCTCGCAGAGGCACCCAGTGCGCCGCCCTTTTTGACGATGGTAA
GGGCCCTGCGTGGTACAGGGCCCAGGTGATCGGGTCGACGCCCTTGGGCA
CAAGGGTCCGGTATGTGGATCACGGTAATTGTGCCACTGTAAAGGCGTCA
CAGCTGCGGCCGCTGGACTCGTCGTACTTTGCTTTTCCGCCTCAAGCAAG
AGAGTGCGTGCTGGCCTTCACACGGGTTCCCTCGCTCGAGGAGGAGTTCG
GGCGTGACGCAGCCATGAGCTTGAATGACCTTGGATGGGGAAAGAAGCTC
CTGGGTCGCGCCCTCGGGAAGGACGCGGACGGTCGCCTTATGGCTCCTCG
CAGAGGCACCCAGTGCGCCGCCCTTTTTGACGATGGTAAGGGCCCTGCGT
GGTACAGGGCCCAGGTGATCGGGTCGACGCCCTTGGGCACAAGGGTCCGG
TATGTGGATCACGGTAATTGTGCCACTGTAAAGGCGTCACAGCTGCGGCC
GCTGGACTCGTCGTACTTTGCTTTTCCGCCTCAAGCAAGAGAGTGCGTGC
TGGCCTTCACACGGGTTCCCTCGCTCGAGGAGGAGTTCGGGCGTGACGCA
GCCATGAGCTTGAATGACCTTGGATGGGGAAAGAAGCTCCTGGGTCGCGC
CCTCGGGAAGGACGCGGACGGTCGCCTTATGATGGCGCTTTATGAGTCGA
ACGACTCTAATAGCATAAATGAGACCTTGGTAGCTCAAGGGGTGGCTCGT
TTGGAAAAAACCTCCAAAATATTTACTACTTGCCAGATGATGGCGCTTTA
TGAGTCGAACGACTCTAATAGCATAAATGAGACCTTGGTAGCTCAAGGGG
TGGCTCGTTTGGAAAAAACCTCCAAAATATTTACTACTTGCCAGCCCGCG
AAGGAGATGGTCGATAAGCTGCGAGAATCACAGGAAATTGCGCACAAGAG
TCGAACCGCTTTATGGCGCTACGGAGACTGTTGTTCAGACGACGAAGATG
ATTTTTAACCCGCGAAGGAGATGGTCGATAAGCTGCGAGAATCACAGGAA
ATTGCGCACAAGAGTCGAACCGCTTTATGGCGCTACGGAGACTGTTGTTC
AGACGACGAAGATGATTTTTAA
back to top