mRNA_H-elongata_contig137151.2615.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137151.2615.1
Unique NamemRNA_H-elongata_contig137151.2615.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137151.2615.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.480e-20
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 MRVFDIPTTPGSSEAEQVEEEHQGKKGKPPLPQTMVQPDDLCPTTVKTRESSAKALCRG-YIQDFGTSKPPTPPFRDVAVLLTLSYKDSEFHRALCLTAADGEYLAPSKAGLAPTLDEEVERKLD 372
            ++VFDIP TP S EAEQ +EE   KK    LP  MV+P  L P   KTRE   K L    Y + +        PFR+ +VLLT SYKD+ F +A  LTAAD ++L   KA LAPT+D EV++KL+
Sbjct:  285 LKVFDIPATPVSPEAEQADEEVPKKKKS--LPHKMVEPAALRPVATKTRELLTKTLVEKLYRRVWDQDSADPSPFRNASVLLTPSYKDTNFLQAHALTAADSQHLDQRKAHLAPTIDTEVDQKLN 407
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BLAST of mRNA_H-elongata_contig137151.2615.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.700e-19
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:    1 MRVFDIPTTPGSSEAEQVEEEHQG--KKGKPPLPQTMVQPDDLCPTTVKTRESSAKALCRG-YIQDFGTSKPPTPPFRDVAVLLTLSYKDSEFHRALCLTAADGEYLAPSKAGLAPTLDEEVERKLD 372
            ++VFDIP TP S  A Q +EE       GK PLP   V+P  L P   KTRE   KAL    Y + +        PFR+ +VLLT SYKDS+F     LTA D ++L   +A LAPTLD++V+ KLD
Sbjct:  502 LKVFDIPPTPDSPAALQSDEELPVTVNTGKKPLPHKTVEPAALRPVATKTRELLGKALVEKLYARLWDEESADPSPFRNASVLLTPSYKDSKFLDGHALTAGDAQHLGEGRAHLAPTLDDDVQSKLD 628
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BLAST of mRNA_H-elongata_contig137151.2615.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.100e-9
Identity = 47/126 (37.30%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:    1 MRVFDIPTTPGSSEAEQVEEEHQGKKGKPPLPQTMVQPDDLCPTTVKTRESSAKAL-CRGYIQDFGTSKPPTPPFRDVAVLLTLSYKDSEFHRALCLTAADGEYLAPSKAGLAPTLDEEVERKLDG 375
            ++VFDIP        ++       K+ K  LP  MV  D L P   K R    +AL  R Y + + TS        D A LLT  + +  +  A+ LTA +GEYL       APTLDEEV+ KLDG
Sbjct:  231 LKVFDIPPLGEDGLPDR-------KEQKKALPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEEGEYLPAGSCVTAPTLDEEVQEKLDG 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137151.2615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZ46_9PHAE1.480e-2048.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L1G0_9PHAE8.700e-1945.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT2_9PHAE5.100e-937.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137151contigH-elongata_contig137151:1318..1692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.7914894-CDS-H-elongata_contig137151:1317..16921622929814.7914894-CDS-H-elongata_contig137151:1317..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137151 1318..1692 +
1691679168.0296068-CDS-H-elongata_contig137151:1317..16921691679168.0296068-CDS-H-elongata_contig137151:1317..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137151 1318..1692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137151.2615.1prot_H-elongata_contig137151.2615.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137151 1318..1692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137151.2615.1

>prot_H-elongata_contig137151.2615.1 ID=prot_H-elongata_contig137151.2615.1|Name=mRNA_H-elongata_contig137151.2615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MRVFDIPTTPGSSEAEQVEEEHQGKKGKPPLPQTMVQPDDLCPTTVKTRE
SSAKALCRGYIQDFGTSKPPTPPFRDVAVLLTLSYKDSEFHRALCLTAAD
GEYLAPSKAGLAPTLDEEVERKLDG
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mRNA from alignment at H-elongata_contig137151:1318..1692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137151.2615.1 ID=mRNA_H-elongata_contig137151.2615.1|Name=mRNA_H-elongata_contig137151.2615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig137151:1318..1692+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGTGTTCGATATCCCCACGACGCCAGGTTCTTCCGAAGCGGAGCA
GGTGGAGGAGGAACACCAGGGGAAGAAGGGCAAGCCACCGCTGCCGCAGA
CGATGGTGCAGCCGGATGACTTGTGTCCCACTACCGTCAAGACCCGGGAG
AGCTCAGCAAAGGCCCTGTGCAGAGGTTATATTCAAGACTTTGGGACAAG
CAAACCGCCGACCCCCCCCTTCCGCGACGTCGCCGTGCTGCTCACTCTGT
CGTACAAGGACTCCGAGTTCCATAGGGCTCTTTGTTTGACGGCAGCGGAC
GGTGAGTATCTTGCCCCGAGTAAAGCGGGCTTGGCTCCTACCCTCGATGA
AGAGGTGGAGAGAAAATTGGACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig137151:1318..1692+

>mRNA_H-elongata_contig137151.2615.1 ID=mRNA_H-elongata_contig137151.2615.1|Name=mRNA_H-elongata_contig137151.2615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig137151:1318..1692+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGTGTTCGATATCCCCACGACGCCAGGTTCTTCCGAAGCGGAGCA
GGTGGAGGAGGAACACCAGGGGAAGAAGGGCAAGCCACCGCTGCCGCAGA
CGATGGTGCAGCCGGATGACTTGTGTCCCACTACCGTCAAGACCCGGGAG
AGCTCAGCAAAGGCCCTGTGCAGAGGTTATATTCAAGACTTTGGGACAAG
CAAACCGCCGACCCCCCCCTTCCGCGACGTCGCCGTGCTGCTCACTCTGT
CGTACAAGGACTCCGAGTTCCATAGGGCTCTTTGTTTGACGGCAGCGGAC
GGTGAGTATCTTGCCCCGAGTAAAGCGGGCTTGGCTCCTACCCTCGATGA
AGAGGTGGAGAGAAAATTGGACGGTATGAGGGTGTTCGATATCCCCACGA
CGCCAGGTTCTTCCGAAGCGGAGCAGGTGGAGGAGGAACACCAGGGGAAG
AAGGGCAAGCCACCGCTGCCGCAGACGATGGTGCAGCCGGATGACTTGTG
TCCCACTACCGTCAAGACCCGGGAGAGCTCAGCAAAGGCCCTGTGCAGAG
GTTATATTCAAGACTTTGGGACAAGCAAACCGCCGACCCCCCCCTTCCGC
GACGTCGCCGTGCTGCTCACTCTGTCGTACAAGGACTCCGAGTTCCATAG
GGCTCTTTGTTTGACGGCAGCGGACGGTGAGTATCTTGCCCCGAGTAAAG
CGGGCTTGGCTCCTACCCTCGATGAAGAGGTGGAGAGAAAATTGGACGGT
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