mRNA_H-elongata_contig137000.2608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137000.2608.1
Unique NamemRNA_H-elongata_contig137000.2608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: D8LCY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.770e-19
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    4 QWGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTRR 144
            QWGLDLLWRLLRWDP+ RIS ++ALEHAYF GPYRSRRDG+ H T+R
Sbjct:  592 QWGLDLLWRLLRWDPMSRISASDALEHAYFVGPYRSRRDGTLHATQR 638          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A6H5JKE5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.360e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    4 QWGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPT 138
            QWGLDLLWRLLRWDP+ RIS ++ALEHAYF GPYRSRRDG+ H T
Sbjct:  672 QWGLDLLWRLLRWDPMSRISASDALEHAYFVGPYRSRRDGTLHAT 716          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A8K1CDS6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDS6_PYTOL)

HSP 1 Score: 65.1 bits (157), Expect = 4.900e-11
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    4 QWGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTR 141
            +WGLDL+W+LL+W+P +RIS  EAL+HA+F GPY S  DG    T+
Sbjct:  500 RWGLDLMWKLLQWNPSQRISAREALQHAFFQGPYMSTEDGRRFATK 545          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A6A3FDD1_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FDD1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.900e-11
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTR 141
            WGLDL+WRLL+W P ERIS  +ALEHAYF GPY  +  G    TR
Sbjct:  572 WGLDLMWRLLQWHPSERISAEDALEHAYFRGPYVCKESGRRFATR 616          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: F0X0Q1_9STRA (Protein phosphatase 1Llike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0Q1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTRR 144
            WGLDL+W+LL+WDP +RIS  EAL HA+F GPY     G A  T++
Sbjct:  204 WGLDLIWKLLQWDPKQRISAKEALRHAFFVGPYICNETGRAFATKK 249          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: M4C3Z6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3Z6_HYAAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.340e-10
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTR 141
            WGLDL+W+LL+W+P ERI   EAL+HAYF GPY  ++ G    TR
Sbjct:  507 WGLDLMWKLLQWNPSERIPAAEALQHAYFQGPYVCQQSGRQFATR 551          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: T0RAV5_SAPDV (CMGC protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RAV5_SAPDV)

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTRR 144
            WGL+LL++LL+WDP +RIS T+ALEHAYF GPY     G    TRR
Sbjct:  454 WGLNLLYKLLQWDPAKRISATDALEHAYFQGPYVCPETGREFSTRR 499          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A067BCU9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BCU9_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-9
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTRR 144
            WGL+LL++LL+WDP +RIS  +ALEHAYF GPY     G    TRR
Sbjct:   92 WGLNLLYKLLQWDPAKRISAIDALEHAYFRGPYVCPESGREFSTRR 137          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A0A7CPJ9_9STRA (Secreted protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CPJ9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-9
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTR 141
            WGL+LL++LL+WDP +RIS  +AL+HAYF GPY     G A  TR
Sbjct:  471 WGLNLLYKLLQWDPAKRISAADALQHAYFRGPYVCGETGRAFATR 515          
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Match: A0A3R7GEL2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GEL2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-9
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    7 WGLDLLWRLLRWDPLERISVTEALEHAYFAGPY 105
            WGLDL+WRLL+W P +RI+  +AL+HAYF GPY
Sbjct:  548 WGLDLMWRLLQWHPAQRITAEQALQHAYFRGPY 580          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137000.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LCY1_ECTSI6.770e-1978.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKE5_9PHAE2.360e-1880.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A8K1CDS6_PYTOL4.900e-1156.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3FDD1_9STRA4.900e-1162.22Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
F0X0Q1_9STRA1.710e-1056.52Protein phosphatase 1Llike protein putative n=1 Ta... [more]
M4C3Z6_HYAAE2.340e-1057.78Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
T0RAV5_SAPDV3.200e-1060.87CMGC protein kinase n=1 Tax=Saprolegnia diclina (s... [more]
A0A067BCU9_SAPPC1.520e-958.70Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A0A7CPJ9_9STRA2.850e-957.78Secreted protein n=2 Tax=Achlya hypogyna TaxID=120... [more]
A0A3R7GEL2_9STRA3.900e-966.67Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137000contigH-elongata_contig137000:1511..1657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D8LCY1
KEGG koko:K17501
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.0573523-CDS-H-elongata_contig137000:1510..16571622929814.0573523-CDS-H-elongata_contig137000:1510..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137000 1511..1657 -
1691679167.715468-CDS-H-elongata_contig137000:1510..16571691679167.715468-CDS-H-elongata_contig137000:1510..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137000 1511..1657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137000.2608.1prot_H-elongata_contig137000.2608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137000 1511..1657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137000.2608.1

>prot_H-elongata_contig137000.2608.1 ID=prot_H-elongata_contig137000.2608.1|Name=mRNA_H-elongata_contig137000.2608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MQWGLDLLWRLLRWDPLERISVTEALEHAYFAGPYRSRRDGSAHPTRR*
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mRNA from alignment at H-elongata_contig137000:1511..1657-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137000.2608.1 ID=mRNA_H-elongata_contig137000.2608.1|Name=mRNA_H-elongata_contig137000.2608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig137000:1511..1657- (Himanthalia elongata Himel1 dioecious)
ATGCAGTGGGGCCTGGATCTCCTCTGGCGTCTATTGCGCTGGGACCCGCT CGAGCGAATCTCTGTGACAGAGGCCCTCGAACACGCGTACTTCGCGGGGC CGTACCGCAGCCGTCGCGACGGCTCCGCCCACCCGACTCGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig137000:1511..1657-

>mRNA_H-elongata_contig137000.2608.1 ID=mRNA_H-elongata_contig137000.2608.1|Name=mRNA_H-elongata_contig137000.2608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig137000:1511..1657- (Himanthalia elongata Himel1 dioecious)
ATGCAGTGGGGCCTGGATCTCCTCTGGCGTCTATTGCGCTGGGACCCGCT
CGAGCGAATCTCTGTGACAGAGGCCCTCGAACACGCGTACTTCGCGGGGC
CGTACCGCAGCCGTCGCGACGGCTCCGCCCACCCGACTCGCAGGTGAATG
CAGTGGGGCCTGGATCTCCTCTGGCGTCTATTGCGCTGGGACCCGCTCGA
GCGAATCTCTGTGACAGAGGCCCTCGAACACGCGTACTTCGCGGGGCCGT
ACCGCAGCCGTCGCGACGGCTCCGCCCACCCGACTCGCAGGTGA
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