mRNA_H-elongata_contig136964.2604.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI) HSP 1 Score: 221 bits (563), Expect = 3.980e-63 Identity = 116/214 (54.21%), Postives = 139/214 (64.95%), Query Frame = 1
Query: 1 DESSGVRVLETQTVLCRPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRLPHRGARTIED-----GAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQGEEAGVHPLVVFRGHTDTVFSCSLLPGGEVAVTGGADTVVRVWDARTGGGVRSLVVEGKEVLCVRPWPRDPD 627
D S V+ + V+ R HH GSI+CL FSPDS L+ATGSNDK+V+LL+LP + + G + +VLRGHTGTVRDLC+P P P G +A + RLL+ GAGD+ACRVWDV G + PLV+ RGHTDTVFSCS+LPGG VAVTGGAD VR+WD RTG VRSL+VEGKEVLCVRPWP DP+
Sbjct: 759 DSDSPVQEWPSTEVIRRENHHLGSIFCLGFSPDSSLLATGSNDKLVRLLKLPGTTPESQQQXXQQPGFSDRNGCDAEPSSLVLRGHTGTVRDLCYPLPPPTFA----GPPAASASSERLLSVGAGDYACRVWDVTGGXXXXX-XXXXIAPLVLLRGHTDTVFSCSMLPGGNVAVTGGADASVRLWDTRTGDSVRSLIVEGKEVLCVRPWPGDPE 967
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A835ZD46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD46_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.830e-30 Identity = 81/210 (38.57%), Postives = 101/210 (48.10%), Query Frame = 1
Query: 16 VRVLETQTVLCRPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRLPHRGARTIEDGAEPHDTI---APSSDGIVLR----------GHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQGEEAGVHPLVVFRGHTDTVFSCSLLPGGEVAVTGGADTVVRVWDARTGGGVRSLVVEGKEV--LC 600
+RVL+ L H GS+YC+A+S D+ LIATGSNDK V++ R G+ DG+ L GH GTVR + F S N +L++AGAGDFA RVWD PL +FRGHT TV++ LP G VTGGAD V+R+WD RTGGG S+ G EV LC
Sbjct: 757 LRVLQADVALHARTRHGGSVYCVAWSADAALIATGSNDKSVRVTRFRSGGSXXXXXXXXXXXXXXXXVEGDDGVTLMVLLCAHTARAGHGGTVRAVAFLS-----------------SNAQLISAGAGDFAVRVWDAAAXXXXXXXXXXXXAPLTLFRGHTATVYAARALPRGLGVVTGGADGVLRLWDPRTGGGAMSVAAAGGEVRGLC 949
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A504YZI5_FASGI (WD repeat-containing protein 47 n=3 Tax=Fasciola TaxID=6191 RepID=A0A504YZI5_FASGI) HSP 1 Score: 100 bits (250), Expect = 4.580e-21 Identity = 68/172 (39.53%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 49 RPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRLPHRGARTIEDGAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQ--GEEAGVHPLVVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
R ++HRGSIYC+A+SPD LIATGSND V+LL + + I +P + + I LR H GTVRDL F P Y + + A++R LLTAGAGD + D + A G VH V R GHT V++ ++ G + V+G AD R+WD R
Sbjct: 660 RGKYHRGSIYCVAWSPDGGLIATGSNDTTVRLLPMESQSGLPIAAHGDP-SLASTAGHAIELRHHDGTVRDLTFLLPG---YPSDSSTRVSTAESRHLLTAGAGDARICLVDCSRVESADPSLGSIRPVHSGHVIRSMSGHTGPVYALAVWAPGSLFVSGSADATARLWDLR 827
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A654I6C3_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654I6C3_9CEST) HSP 1 Score: 96.7 bits (239), Expect = 6.380e-20 Identity = 73/191 (38.22%), Postives = 94/191 (49.21%), Query Frame = 1
Query: 40 VLCRPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQ----------GEEAGVHPL-------VVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
V+ RP++HRGSIYC+A+S D +IATGSND V LLR+ P G + A T + + I L H GTVRD+ F YS G + G LLTAGAGD V DVE + Q G G PL V R GH+ TV++ ++ G + V+G AD R+WD R
Sbjct: 102 VMQRPKYHRGSIYCIAWSNDGRVIATGSNDTSVNLLRIDPETGCFSSVSDA----TSKKTENFIQLTHHDGTVRDVAF---MLNSYSKGSEAVSGGGTAGYLLTAGAGDCRIYVVDVERASLLAQSSLSSGGGDTGNSGGTAPLRLKTSSAAVVRALSGHSATVYALTVWAPGSLFVSGSADATARLWDIR 285
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A7M3QFA5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QFA5_SPIER) HSP 1 Score: 97.1 bits (240), Expect = 1.010e-19 Identity = 74/191 (38.74%), Postives = 94/191 (49.21%), Query Frame = 1
Query: 40 VLCRPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQ----------GEEAGVHPL-------VVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
V+ RP++HRGSIYC+A+S D +IATGSND V LLR+ P G + A T + I L H GTVRD+ F YS G + G LLTAGAGD V DVE + Q G AG PL V R GH+ TV++ ++ G + V+G AD R+WD R
Sbjct: 789 VMQRPKYHRGSIYCIAWSNDGRVIATGSNDTSVNLLRVDPETGCFSSVSDA----TSKKTEHFIQLTHHDGTVRDVAF---MLNSYSKGSEAVSGGGTAGYLLTAGAGDCRIYVVDVERASLLAQSSLSSGGGDTGNSAGTAPLRLKTPSAAVVRALSGHSATVYALTVWAPGSLFVSGSADATARLWDIR 972
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A3P7LYN1_DIBLA (Uncharacterized protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7LYN1_DIBLA) HSP 1 Score: 93.6 bits (231), Expect = 1.450e-19 Identity = 71/188 (37.77%), Postives = 91/188 (48.40%), Query Frame = 1
Query: 49 RPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQ----------GEEAGVHPL-------VVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
RP++HRGSIYC+A+S D +IATGSND V LLR+ P G A T + + I L H GTVRD+ F YS G + G LLTAGAGD V DVE + + G G PL V R GH+ TV++ ++ G + V+G AD R+WD R
Sbjct: 3 RPKYHRGSIYCVAWSNDGRVIATGSNDTSVNLLRVDPETGCFPSASDA----TTKKTENFIQLTHHDGTVRDVAF---MLNSYSKGSEAVAGGGTAGHLLTAGAGDCRIYVIDVERASLLARSSLSSSGGDTGTSGGTAPLRLKSSSAAVVRALSGHSATVYALTVWAPGSLFVSGSADATARLWDIR 183
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A183X3V0_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X3V0_TRIRE) HSP 1 Score: 90.1 bits (222), Expect = 6.480e-19 Identity = 68/180 (37.78%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 49 RPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSD-GIVLRGHTGTVRDLCF--------PSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQGEEAGVHPLVVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
R ++H+GSIYC+A+SPD LIATGSND V+LL++ P G I D A IA ++ I LR H GTVRD+ F S A Y + + + + + LL+AGAGD + D P V R GHT V+S S+ G + V+G AD R+WD R
Sbjct: 3 RQKYHKGSIYCVAWSPDGKLIATGSNDTTVRLLQMDPSTG---IPDAACGDPEIASTAGHAIELRYHDGTVRDIAFLVSFVSITVSFALRSYPSSDANT--STLSNHLLSAGAGDSRIYLVDCNRAQTFDPSAPKSTPPGYVVRSMSGHTAAVYSLSVWSPGSLFVSGSADATARLWDLR 177
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A5J4NSE2_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NSE2_9TREM) HSP 1 Score: 94.0 bits (232), Expect = 7.150e-19 Identity = 66/178 (37.08%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 49 RPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSDGIV-LRGHTGTVRDLCFPSPAPECYSAGEGS----AGGAAQNRRLLTAGAGDFA-----CRVWDVEGMPVAGQGEEAGVHPLVVFRGHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
RP++HRGSIYC+A+SPD LIATGSND V+LL + P G + + A ++A ++ V LR H GT+RDL F A AG + + + LLTAGAGD C + + GQ + H + GHT V++ ++ G + V+G AD R+WD R
Sbjct: 118 RPKYHRGSIYCVAWSPDGRLIATGSNDTTVRLLAMCPETG---LPEAANGDISLANTAGQCVDLRHHDGTIRDLTFLLSAYSTEQAGSSATPRISNSTTASTHLLTAGAGDARICLVDCSRAEAVNPSLGGQPTKPS-HVIRSMSGHTAPVYALNVWSPGSLFVSGSADATARLWDLR 291
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A4Z2DH44_SCHJA (WD repeat-containing protein n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DH44_SCHJA) HSP 1 Score: 94.0 bits (232), Expect = 1.180e-18 Identity = 68/175 (38.86%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 49 RPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSD-GIVLRGHTGTVRDLCF---PSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQGEEAGVHPLVVFR---GHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
R ++HRGSIYC+A+SPD LIATGSND ++LL++ P G I D A IA ++ I LR H GTVRD+ F P+ + ++ GS LL+AGAGD + D P V R GHT V+S S+ G + V+G AD R+WD R
Sbjct: 821 RQKYHRGSIYCVAWSPDGRLIATGSNDTTIRLLQMDPTTG---IPDAACGDPEIASTAGYAIELRYHDGTVRDIAFLLGSYPSSDTNTSAPGS--------HLLSAGAGDSRIYLVDCNRAQTYDPTSSKSTPPSYVVRSMSGHTAAVYSLSVWSPGSLFVSGSADATARLWDLR 984
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Match: A0A183T407_SCHSO (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T407_SCHSO) HSP 1 Score: 93.6 bits (231), Expect = 1.570e-18 Identity = 68/188 (36.17%), Postives = 94/188 (50.00%), Query Frame = 1
Query: 40 VLCRPEHHRGSIYCLAFSPDSVLIATGSNDKVVKLLRL-PHRGARTIEDGAEPHDTIAPSSDGIVLRGHTGTVRDLCFPSPAPECYSAGEGSAGGAAQNRRLLTAGAGDFACRVWDVEGMPVAGQ-------GEEAGVHPLV----------VFRGHTDTVFSCSLLPGGEVAVTGGADTVVRVWDAR 549
V+ RP++HRGSIYC+A+S D +IATGSND V LLR+ P G + A T + + I L H GTVRD+ F Y+ G + G LLTAGAGD V DVE + + G+ G + + V GH+ TV++ ++ G + V+G AD R+WD R
Sbjct: 670 VMHRPKYHRGSIYCVAWSNDGRVIATGSNDTAVNLLRVDPETGCFSSLSDA----TSKKTENFIQLTHHDGTVRDVAF---MLNSYAKGSEAVSGGGAAGYLLTAGAGDCRIYVVDVERASLLARSSLSSSGGDTGGTNAIRLKSPSAAVVRVLSGHSATVYALTVWAPGSLFVSGSADATARLWDIR 850 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136964.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136964.2604.1 >prot_H-elongata_contig136964.2604.1 ID=prot_H-elongata_contig136964.2604.1|Name=mRNA_H-elongata_contig136964.2604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp MLFRRGGKCWRGGAKSPSSYSRSRRFRVSGVGRRRHAGSRARGGGGGASLback to top mRNA from alignment at H-elongata_contig136964:330..1713- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136964.2604.1 ID=mRNA_H-elongata_contig136964.2604.1|Name=mRNA_H-elongata_contig136964.2604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1384bp|location=Sequence derived from alignment at H-elongata_contig136964:330..1713- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136964:330..1713- >mRNA_H-elongata_contig136964.2604.1 ID=mRNA_H-elongata_contig136964.2604.1|Name=mRNA_H-elongata_contig136964.2604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig136964:330..1713- (Himanthalia elongata Himel1 dioecious)back to top |