mRNA_H-elongata_contig136873.2597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136873.2597.1
Unique NamemRNA_H-elongata_contig136873.2597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A813YH49_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YH49_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 8.900e-10
Identity = 25/82 (30.49%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   10 WVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKRFSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAVADSG 255
            W  D+GA+ H   +    ID       ++   G+   ++G G+++  +RS+ E+  + ++N +YVP+LS NLIS+R ++ +G
Sbjct:  225 WFLDSGATNHLCCNKGMFIDIKPYNSKVKVGDGRELEVKGIGNIVAKIRSKNEIKRITIKNAMYVPDLSVNLISIRKLSSNG 306
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BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.770e-9
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR-FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAV 243
            ER+V DTGA+ H    +    ++ EC + +  A+GK+ F+I GYGD+ + + S      L L+ V +VPEL+ NL+SL A+
Sbjct:   54 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTAL 134
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BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A1W7R600_AEDAL (Putative copia-8 aa-i (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R600_AEDAL)

HSP 1 Score: 61.2 bits (147), Expect = 5.620e-9
Identity = 29/85 (34.12%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKRFSIEGYGDLILHLRS-EGEVAHLKLRNVVYVPELSSNLISLRAVADSG 255
            ++W+ D+GAS+H +++      F   ++ +  A G++    G+G  I+  +S +GE+  +K++ V+YVP L SNLIS+  +A SG
Sbjct:  282 QKWIFDSGASRHMTSNKRCFTCFSGQRETVHLADGRKLLSLGFGTAIIRSQSADGEIISVKMKEVLYVPNLRSNLISVGLIASSG 366
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BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.940e-9
Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   10 WVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKRFSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAVADSG 255
            WV D+GAS HF N+S+   +       +R A+G   +IEG G + L + +   +  ++L+NV Y+P L  NL SL  V+  G
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQHG 378
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: I2G1X3_USTH4 (Integrase catalytic domain-containing protein n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2G1X3_USTH4)

HSP 1 Score: 60.1 bits (144), Expect = 1.380e-8
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   10 WVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKRFSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAVADSG 255
            WV D+GA++H +ND+  +I    C + ++TA G    I+  G  I+++    +   + L NV+YVPE S NL+S+RA+  +G
Sbjct:   46 WVIDSGATEHITNDNTILIFPSPCTRIVKTAGGMLIGIKARGQAIVNV----DGFKVYLNNVLYVPEASINLMSVRALTSNG 123
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A9NWA6_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NWA6_PICSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.920e-8
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    1 DERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR--FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAVADSG 255
            D+ W+ D GAS+H   D A + D  E +   +   G +  + +EG+G   + L S     H+ L NV+YVP L  NL+S+  + D G
Sbjct:   53 DDMWIIDNGASRHMMGDQARLSDLNERKTSYKVELGDKSTYPVEGFGQASIKLESGN---HVHLSNVLYVPGLEKNLVSISCLEDKG 136
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.060e-8
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR-FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAV 243
            ER+V DTGA+ H    +    ++ EC + +  A+GK+ F+I GYGD+ + + S      L L+ V +VPEL+ NL+SL A+
Sbjct:  280 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTAL 360
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6H5KRW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-8
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR-FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAV 243
            ER+V DTGA+ H    +    ++ EC + +  A+GK+ F+I GYGD+ + + S      L L+ V +VPEL+ NL+SL A+
Sbjct:  507 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTAL 587
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-8
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR-FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAV 243
            ER+V DTGA+ H    +    ++ EC + +  A+GK+ F+I GYGD+ + + S      L L+ V +VPEL+ NL+SL A+
Sbjct:  478 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTAL 558
[Close]
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.160e-8
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 ERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKR-FSIEGYGDLILHLRSEGEVAHLKLRNVVYVPELSSNLISLRAV 243
            ER+V DTGA+ H    +    ++ EC + +  A+GK+ F+I GYGD+ + + S      L L+ V +VPEL+ NL+SL A+
Sbjct:  858 ERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTAL 938
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136873.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813YH49_9BILA8.900e-1030.49Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6H5KDA4_9PHAE3.770e-939.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1W7R600_AEDAL5.620e-934.12Putative copia-8 aa-i (Fragment) n=1 Tax=Aedes alb... [more]
A0A6G0X3B5_9STRA5.940e-936.59Integrase catalytic domain-containing protein n=1 ... [more]
I2G1X3_USTH41.380e-836.59Integrase catalytic domain-containing protein n=1 ... [more]
A9NWA6_PICSI1.920e-834.48Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A6H5KPC5_9PHAE2.060e-839.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW7_9PHAE2.080e-839.51CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K4H5_9PHAE2.140e-839.51CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE2.160e-839.51CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136873contigH-elongata_contig136873:973..1242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.9
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog36651.K9FNP8
GOsGO:0000943,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003887,GO:0003964,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019538,GO:0032196,GO:0032197,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0140096,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576
EggNOG free text desc.polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN)
EggNOG OGs39YUU@33154,3P1DN@4751,3QRDY@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.7136772-CDS-H-elongata_contig136873:972..12421622929812.7136772-CDS-H-elongata_contig136873:972..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136873 973..1242 -
1691679167.1801226-CDS-H-elongata_contig136873:972..12421691679167.1801226-CDS-H-elongata_contig136873:972..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136873 973..1242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136873.2597.1prot_H-elongata_contig136873.2597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136873 973..1242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136873.2597.1

>prot_H-elongata_contig136873.2597.1 ID=prot_H-elongata_contig136873.2597.1|Name=mRNA_H-elongata_contig136873.2597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
DERWVCDTGASQHFSNDSAHMIDFCECQKFIRTASGKRFSIEGYGDLILH
LRSEGEVAHLKLRNVVYVPELSSNLISLRAVADSGGSYSG
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mRNA from alignment at H-elongata_contig136873:973..1242-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136873.2597.1 ID=mRNA_H-elongata_contig136873.2597.1|Name=mRNA_H-elongata_contig136873.2597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig136873:973..1242- (Himanthalia elongata Himel1 dioecious)
GACGAGCGTTGGGTCTGTGACACCGGCGCTTCGCAGCATTTTAGCAATGA
CTCTGCGCACATGATCGATTTCTGTGAATGCCAAAAATTTATACGGACGG
CTAGCGGGAAGAGATTCTCGATCGAGGGTTACGGTGACCTTATCTTGCAC
CTTCGGTCTGAGGGAGAGGTGGCACATCTCAAGCTTCGCAATGTAGTGTA
TGTGCCGGAACTTTCTTCCAATCTGATATCACTCAGAGCAGTAGCCGACA
GTGGAGGTTCATACTCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig136873:973..1242-

>mRNA_H-elongata_contig136873.2597.1 ID=mRNA_H-elongata_contig136873.2597.1|Name=mRNA_H-elongata_contig136873.2597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig136873:973..1242- (Himanthalia elongata Himel1 dioecious)
GACGAGCGTTGGGTCTGTGACACCGGCGCTTCGCAGCATTTTAGCAATGA
CTCTGCGCACATGATCGATTTCTGTGAATGCCAAAAATTTATACGGACGG
CTAGCGGGAAGAGATTCTCGATCGAGGGTTACGGTGACCTTATCTTGCAC
CTTCGGTCTGAGGGAGAGGTGGCACATCTCAAGCTTCGCAATGTAGTGTA
TGTGCCGGAACTTTCTTCCAATCTGATATCACTCAGAGCAGTAGCCGACA
GTGGAGGTTCATACTCCGGTGACGAGCGTTGGGTCTGTGACACCGGCGCT
TCGCAGCATTTTAGCAATGACTCTGCGCACATGATCGATTTCTGTGAATG
CCAAAAATTTATACGGACGGCTAGCGGGAAGAGATTCTCGATCGAGGGTT
ACGGTGACCTTATCTTGCACCTTCGGTCTGAGGGAGAGGTGGCACATCTC
AAGCTTCGCAATGTAGTGTATGTGCCGGAACTTTCTTCCAATCTGATATC
ACTCAGAGCAGTAGCCGACAGTGGAGGTTCATACTCCGGT
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