mRNA_H-elongata_contig136524.2576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136524.2576.1
Unique NamemRNA_H-elongata_contig136524.2576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136524.2576.1 vs. uniprot
Match: A0A6H5JI18_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI18_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   19 PSGED---EICDCVIIGGGIAGLAAAADLEKNGIDFVLLEA 132
            P GE+   E+ DCVI+G GIAGLAA ADL++ G+D V+LEA
Sbjct:   91 PPGEEHGEEVRDCVIVGAGIAGLAAGADLQQAGMDLVVLEA 131
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BLAST of mRNA_H-elongata_contig136524.2576.1 vs. uniprot
Match: A0A0C1C304_ASPUT (Monooxygenase n=1 Tax=Aspergillus ustus TaxID=40382 RepID=A0A0C1C304_ASPUT)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   40 CDCVIIGGGIAGLAAAADLEKNGIDFVLLEA 132
            C  +I GGGI+GLA AA LEKNG+DF+LLEA
Sbjct:    9 CKVLIAGGGISGLALAAMLEKNGVDFILLEA 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136524.2576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI18_9PHAE5.980e-660.98PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A0C1C304_ASPUT5.370e-570.97Monooxygenase n=1 Tax=Aspergillus ustus TaxID=4038... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136524contigH-elongata_contig136524:1148..1282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.4194765-CDS-H-elongata_contig136524:1147..12821622929810.4194765-CDS-H-elongata_contig136524:1147..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136524 1148..1282 -
1691679166.3442223-CDS-H-elongata_contig136524:1147..12821691679166.3442223-CDS-H-elongata_contig136524:1147..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136524 1148..1282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136524.2576.1prot_H-elongata_contig136524.2576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136524 1148..1282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136524.2576.1

>prot_H-elongata_contig136524.2576.1 ID=prot_H-elongata_contig136524.2576.1|Name=mRNA_H-elongata_contig136524.2576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MPNIVSPSGEDEICDCVIIGGGIAGLAAAADLEKNGIDFVLLEAG
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mRNA from alignment at H-elongata_contig136524:1148..1282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136524.2576.1 ID=mRNA_H-elongata_contig136524.2576.1|Name=mRNA_H-elongata_contig136524.2576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig136524:1148..1282- (Himanthalia elongata Himel1 dioecious)
ATGCCAAACATTGTCAGCCCGAGCGGGGAAGACGAAATATGTGACTGCGT
GATCATCGGAGGTGGGATAGCTGGGCTTGCGGCTGCAGCCGACCTCGAGA
AGAACGGCATAGATTTCGTCCTCTTGGAAGCAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig136524:1148..1282-

>mRNA_H-elongata_contig136524.2576.1 ID=mRNA_H-elongata_contig136524.2576.1|Name=mRNA_H-elongata_contig136524.2576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig136524:1148..1282- (Himanthalia elongata Himel1 dioecious)
ATGCCAAACATTGTCAGCCCGAGCGGGGAAGACGAAATATGTGACTGCGT
GATCATCGGAGGTGGGATAGCTGGGCTTGCGGCTGCAGCCGACCTCGAGA
AGAACGGCATAGATTTCGTCCTCTTGGAAGCAGGTATGCCAAACATTGTC
AGCCCGAGCGGGGAAGACGAAATATGTGACTGCGTGATCATCGGAGGTGG
GATAGCTGGGCTTGCGGCTGCAGCCGACCTCGAGAAGAACGGCATAGATT
TCGTCCTCTTGGAAGCAGGT
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