mRNA_H-elongata_contig136478.2571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136478.2571.1
Unique NamemRNA_H-elongata_contig136478.2571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.140e-12
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   34 FDLLKYWN------ACS--------ARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F++L +WN       CS        A  P++  IARL+ G++ +SCQAERNFSAL  ++  LR   L+ K+E+M+L+RLNR L+
Sbjct:  146 FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.290e-12
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLN 231
            F+LL +WN                 A  P++  IARL+ G++ TSCQAERNFSAL  ++ D R   L+H++E+M+L+RLN
Sbjct:  141 FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.320e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F+L+ +WN                 A  P++  IARL+ G++ TSCQAERNFSAL  ++  LR   LA K+E+M+L+RLNR L+
Sbjct:  406 FNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.360e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F++L YWN                 A  P++  IARLY G++ TSCQAERNFSAL  ++  LR   L  K+E+M+ +RLNR L+
Sbjct:  528 FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.400e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F++L YWN                 A  P++  IARLY G++ TSCQAERNFSAL  ++  LR   L  K+E+M+ +RLNR L+
Sbjct:  723 FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.590e-12
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F+LL +WN                 A  P++  IARL+ G++ TSCQAERNFSAL  ++ DL    L+H++E+M+L+RLN+ L+
Sbjct:  524 FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.640e-12
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   34 FDLLKYWN------ACS--------ARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F++L +WN       CS        A  P++  IARL+ G++ +SCQAERNFSAL  ++  LR   L+ K+E+M+L+RLNR L+
Sbjct:  711 FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.210e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   34 FDLLKYWN--------------ACSARWPHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLI 243
            F+L+ +WN                 A  P++  IARL+ G++ TSCQAERNFSAL  ++ +LR   L H++E+M+L+RLNR ++
Sbjct:  420 FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.150e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 MKEAASNNNAKFDLLKYWN------ACSARW------PHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLIP 246
            + E  +     F LL++W        C+         PH+ LIARL+ G++ TSCQAERNFSAL  ++  LR+  L  K+E+++ LRLNR  IP
Sbjct:  375 LAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 468
[Close]
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.210e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 MKEAASNNNAKFDLLKYWN------ACSARW------PHVGLIARLYAGLDITSCQAERNFSALKQVLSDLRAGSLAHKIEKMLLLRLNRSLIP 246
            + E  +     F LL++W        C+         PH+ LIARL+ G++ TSCQAERNFSAL  ++  LR+  L  K+E+++ LRLNR  IP
Sbjct:  703 LAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 796
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136478.2571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KJT6_9PHAE2.140e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE2.290e-1242.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE3.320e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE3.360e-1242.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE3.400e-1242.86Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JQI6_9PHAE4.590e-1241.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE4.640e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE6.210e-1240.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.150e-1140.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.210e-1140.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136478contigH-elongata_contig136478:416..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.9931772-CDS-H-elongata_contig136478:415..6611622929809.9931772-CDS-H-elongata_contig136478:415..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136478 416..661 +
1691679166.1641612-CDS-H-elongata_contig136478:415..6611691679166.1641612-CDS-H-elongata_contig136478:415..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136478 416..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136478.2571.1prot_H-elongata_contig136478.2571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136478 416..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136478.2571.1

>prot_H-elongata_contig136478.2571.1 ID=prot_H-elongata_contig136478.2571.1|Name=mRNA_H-elongata_contig136478.2571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MKEAASNNNAKFDLLKYWNACSARWPHVGLIARLYAGLDITSCQAERNFS
ALKQVLSDLRAGSLAHKIEKMLLLRLNRSLIP
back to top

mRNA from alignment at H-elongata_contig136478:416..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136478.2571.1 ID=mRNA_H-elongata_contig136478.2571.1|Name=mRNA_H-elongata_contig136478.2571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig136478:416..661+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGGCGGCGTCTAACAACAACGCCAAGTTCGACCTCCTCAAGTA
CTGGAATGCGTGCTCTGCCCGCTGGCCGCACGTCGGTTTGATAGCACGGT
TGTACGCAGGGCTCGACATCACGAGTTGTCAAGCGGAGCGGAACTTTTCT
GCCCTCAAGCAGGTCCTTAGTGACCTGCGCGCAGGTAGTCTAGCTCACAA
GATTGAAAAGATGCTGTTGCTCAGGCTTAACAGGAGCCTCATTCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig136478:416..661+

>mRNA_H-elongata_contig136478.2571.1 ID=mRNA_H-elongata_contig136478.2571.1|Name=mRNA_H-elongata_contig136478.2571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig136478:416..661+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGGCGGCGTCTAACAACAACGCCAAGTTCGACCTCCTCAAGTA
CTGGAATGCGTGCTCTGCCCGCTGGCCGCACGTCGGTTTGATAGCACGGT
TGTACGCAGGGCTCGACATCACGAGTTGTCAAGCGGAGCGGAACTTTTCT
GCCCTCAAGCAGGTCCTTAGTGACCTGCGCGCAGGTAGTCTAGCTCACAA
GATTGAAAAGATGCTGTTGCTCAGGCTTAACAGGAGCCTCATTCCCATGA
AAGAGGCGGCGTCTAACAACAACGCCAAGTTCGACCTCCTCAAGTACTGG
AATGCGTGCTCTGCCCGCTGGCCGCACGTCGGTTTGATAGCACGGTTGTA
CGCAGGGCTCGACATCACGAGTTGTCAAGCGGAGCGGAACTTTTCTGCCC
TCAAGCAGGTCCTTAGTGACCTGCGCGCAGGTAGTCTAGCTCACAAGATT
GAAAAGATGCTGTTGCTCAGGCTTAACAGGAGCCTCATTCCC
back to top