mRNA_H-elongata_contig136438.2569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136438.2569.1
Unique NamemRNA_H-elongata_contig136438.2569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136438.2569.1 vs. uniprot
Match: A0A7N2LHA8_QUELO (DUF659 domain-containing protein n=4 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LHA8_QUELO)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-7
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    1 TTDLDAEYAMVEKQSKAKLEERGLQRGKTLQADGWIGPDGRPRVNIIVSIDGVDIFLNAIDCTGHKKDMNYLANLYEPFI 240
            TT L  E A VE+  K  +++  L+ G ++ +DGW+ P  RP +NI+V  DG  +F+ AID +G  KD +Y+A + +  I
Sbjct:  209 TTLLQKERAHVERLLKP-IKDSWLENGVSIVSDGWLDPQRRPLINIMVVSDGGPVFIKAIDESGEFKDKHYIAEVLKDAI 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136438.2569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7N2LHA8_QUELO1.330e-738.75DUF659 domain-containing protein n=4 Tax=Quercus l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136438contigH-elongata_contig136438:808..1406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136438.2569.1prot_H-elongata_contig136438.2569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136438 808..1379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.8125823-CDS-H-elongata_contig136438:807..9361622929809.8125823-CDS-H-elongata_contig136438:807..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136438 808..936 -
1691679166.1150167-CDS-H-elongata_contig136438:807..9361691679166.1150167-CDS-H-elongata_contig136438:807..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136438 808..936 -
1622929809.8264902-CDS-H-elongata_contig136438:1289..13791622929809.8264902-CDS-H-elongata_contig136438:1289..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136438 1290..1379 -
1691679166.1276984-CDS-H-elongata_contig136438:1289..13791691679166.1276984-CDS-H-elongata_contig136438:1289..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136438 1290..1379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.8429248-UTR-H-elongata_contig136438:1379..14061622929809.8429248-UTR-H-elongata_contig136438:1379..1406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136438 1380..1406 -
1691679166.1355653-UTR-H-elongata_contig136438:1379..14061691679166.1355653-UTR-H-elongata_contig136438:1379..1406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136438 1380..1406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136438.2569.1

>prot_H-elongata_contig136438.2569.1 ID=prot_H-elongata_contig136438.2569.1|Name=mRNA_H-elongata_contig136438.2569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVEKQSKAKLEERGLQRGKTLQADGWIGPDGRPRVNIIVSIDGVDIFLNA
IDCTGHKKDMNYLANLYEPFIDD
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mRNA from alignment at H-elongata_contig136438:808..1406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136438.2569.1 ID=mRNA_H-elongata_contig136438.2569.1|Name=mRNA_H-elongata_contig136438.2569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=599bp|location=Sequence derived from alignment at H-elongata_contig136438:808..1406- (Himanthalia elongata Himel1 dioecious)
ACCACCGACTTGGACGCGGAGTACGCTATGGTGGAGAAGCAGAGTAAGGC
CAAGCTGGAGGAACGTGGCCTTCAGCGTGGCAAGACGCTTCAGGCTGATG
GGTGGATTGGGCCAGATGTAAGCTTGAAGTTTTTGAGTCAGAAAATTGAT
ATTCGAAAAAACAAAACAAGCAGAAGTGTACTGCTGTAGATACAAATAGG
ACCTTGACAGTGTTTCATGTTTTTTGTATTTTTGTAGGTGATCCTATGGG
AGAATGTTCTCTGTACTCTGTACTCCTCGCTGCACTTTAGCACTTTTTAT
TAAAAAAACCTTATATGCTGTACTGCTGTACACTGTACACTCCTGCAGGT
TTGTAATTGATTTTTGAATATTGAGTACGAAGTACTGAATACTCCACCAA
AAATGATCATGCTACATGTATTCATATATTTGTCTAATGTTGTATTTTTG
TTTTTTTTTATGTCTGACAGGGTCGACCTAGGGTGAACATCATAGTGTCT
ATCGACGGCGTCGATATATTTTTGAACGCCATAGACTGCACCGGTCACAA
GAAGGACATGAACTATCTGGCGAACCTGTACGAGCCCTTCATCGATGAT
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Coding sequence (CDS) from alignment at H-elongata_contig136438:808..1406-

>mRNA_H-elongata_contig136438.2569.1 ID=mRNA_H-elongata_contig136438.2569.1|Name=mRNA_H-elongata_contig136438.2569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig136438:808..1406- (Himanthalia elongata Himel1 dioecious)
ATGGTGGAGAAGCAGAGTAAGGCCAAGCTGGAGGAACGTGGCCTTCAGCG
TGGCAAGACGCTTCAGGCTGATGGGTGGATTGGGCCAGATATGGTGGAGA
AGCAGAGTAAGGCCAAGCTGGAGGAACGTGGCCTTCAGCGTGGCAAGACG
CTTCAGGCTGATGGGTGGATTGGGCCAGATGGTCGACCTAGGGTGAACAT
CATAGTGTCTATCGACGGCGTCGATATATTTTTGAACGCCATAGACTGCA
CCGGTCACAAGAAGGACATGAACTATCTGGCGAACCTGTACGAGCCCTTC
ATCGATGATGGTCGACCTAGGGTGAACATCATAGTGTCTATCGACGGCGT
CGATATATTTTTGAACGCCATAGACTGCACCGGTCACAAGAAGGACATGA
ACTATCTGGCGAACCTGTACGAGCCCTTCATCGATGAT
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