mRNA_H-elongata_contig136279.2562.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE) HSP 1 Score: 202 bits (513), Expect = 2.010e-57 Identity = 99/139 (71.22%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVSAHRPSK 423
A ADPSQ+LG +V AL LEH T LT IIRACIALELTSRYS+VCCEVMA SRCP VLYDL+ GLNRSPPHQKIL Y++ T RNIAQRGDGL ++AAPP A T LLQMYR+ QEVFL RLLQQL++AH+P+K
Sbjct: 2187 ALADPSQVLGTRVNDALTALEHCTHLTAIIRACIALELTSRYSKVCCEVMARSRCPQVLYDLIRGLNRSPPHQKILKYVITTFRNIAQRGDGLPALLAAPPVAAETYVDLLQMYRERQEVFLPTVRLLQQLLNAHKPTK 2325
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI) HSP 1 Score: 201 bits (510), Expect = 5.110e-57 Identity = 100/139 (71.94%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVSAHRPSK 423
A ADPSQILG +V AL LEH T LT IIRACIALELTSRYS+VCCEVMA SRCP VLYDL+ GLNRSPPHQKIL Y + T RNIAQRGDGL ++AAPP A T LLQMYR+ QEVFL RLLQQL++AH+P+K
Sbjct: 2306 ALADPSQILGTRVNDALTALEHCTHLTAIIRACIALELTSRYSKVCCEVMARSRCPQVLYDLIRGLNRSPPHQKILKYAITTFRNIAQRGDGLPALLAAPPVAAETYVDLLQMYRERQEVFLPTVRLLQQLLNAHKPTK 2444
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A7S3YG01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG01_HETAK) HSP 1 Score: 81.6 bits (200), Expect = 2.310e-16 Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 1
Query: 4 RARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVSAHR 414
+ARA+P+Q LG + + AL L +T I + C+ LEL++ YSR CCE + +++L+ NRS PHQ++L ++L+ L N+ R L +A P V L ++Q +R+ ++ FL + L+ + + R
Sbjct: 16 QARAEPAQRLGSRTRSALEQLLATKSVTQIKKCCVTLELSTTYSRRCCESFVFAEAHLRMFELMRSCNRSLPHQELLKHVLRILANLT-RYPHLVGTVAQAPGCVEVLVDMMQFFRELEDTFLLSVGLVATMARSER 151
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A2V0PC77_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PC77_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 7.100e-15 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVSA 408
A P + +G++ + AL L + T +I A A+E ++RYSR CC ++AES L + NRS PH ++L L L N+A+ + ++ AP V L+ LQM+RD ++VFLS LL +L ++
Sbjct: 2067 AECAPHKRIGVRAREALKVLLASKQCTQVITAVSAIEFSTRYSRDCCALIAESGGVPALLSFMRSCNRSKPHAEMLRLALGVLHNVARWRELAPAVLGAPECVAV-LSERLQMFRDMEDVFLSVVGLLSKLAAS 2199
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A0D2MQ02_9CHLO (Putative Abnormal spindle-like microcephaly-associated protein like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MQ02_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 7.210e-13 Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVS 405
A P + +G + + AL L +I A A+E ++RYS+ CC ++AES L + G NRS PH ++L L L N A+ + ++AAP V L+ +QM+RD +++FL LL +L S
Sbjct: 1113 AEGAPHRRIGARAREALKVLLASKSCAQVITAVAAMEFSTRYSKECCTLIAESGGVAALLQFMRGCNRSKPHAEMLRLALAVLHNCARWRELAPPVLAAPECVAV-LSERMQMFRDMEDIFLLVVGLLARLAS 1244
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: D8UIV3_VOLCA (Microtubule-associated protein Asp n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UIV3_VOLCA) HSP 1 Score: 63.9 bits (154), Expect = 4.230e-9 Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTR-LTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQ----RGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVS 405
AR P + +G + + AL L R L ++ A LE+++RYSR CC+++A+ L V NRS PH +L+ L L NI R D + + L+ LQ +RD +EVF + LLQ+L +
Sbjct: 1355 ARKAPHRHIGNRTREALDSLLRPNRNLPQVLAAVEVLEVSTRYSRDCCKLIAQDDGVTALLRFVRSCNRSKPHIDVLIRTLAALHNICSCPSIRYDTFVPDVFHAEECLAVLSERLQYFRDTEEVFNTTVTLLQRLTA 1492
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A8C5WK03_9ANUR (Assembly factor for spindle microtubules n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5WK03_9ANUR) HSP 1 Score: 58.5 bits (140), Expect = 3.250e-7 Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 82 LTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRD 354
L+ I+ A LE+ +R S VCCE+MA SR V++ L+ NRS P +++ ++ L N+++ ++V+ A +V L L+Q+YR+
Sbjct: 3184 LSYILAALQHLEVATRLSAVCCEIMARSRAVGVIFTLIRSCNRSIPCMEVIKLAVQVLLNLSKYEGTVQVVYEAE-RSVAVLLDLMQIYRE 3273
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: A0A1U8B8T3_NELNU (abnormal spindle-like microcephaly-associated protein homolog isoform X1 n=6 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B8T3_NELNU) HSP 1 Score: 57.4 bits (137), Expect = 7.920e-7 Identity = 37/136 (27.21%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 7 ARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRDHQEVFLSAARLLQQLVSAHR 414
A D + L ++ AL +L ++ I+ C L++ +R+S+ CCE++ + L L+ +RS P Q++L + L TLRN+A R L + ++ T+ +++R+ +E + A+ LL++L S +
Sbjct: 1241 ANVDDNMRLINRLVAALSELLSIRSVSSILHTCATLDMATRHSQKCCEMLVSAGAIETLLKLIRSTSRSIPDQEVLKHALSTLRNLA-RYPHLAEALLDTHGSIETI--FWELFRNKEEGYFIASELLKKLCSRQK 1373
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Match: UPI001F087A66 (abnormal spindle-like microcephaly-associated protein n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F087A66) HSP 1 Score: 54.7 bits (130), Expect = 7.070e-6 Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 40 KVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEVMAESRCPNVLYDLVGGLNRSPPHQKILMYILKTLRNIAQRGDGLRVIIAAPPAAVVTLTSLLQMYRD 354
K A+ L + I+ A LEL +R S CCE++ ES V++ L+ NRS P +++ Y ++ L N+++ + + A + V TL LLQ+YR+
Sbjct: 2824 KTSTAIDHLLQYKHFSYILTALKNLELATRLSPECCEMLVESGATLVIFTLIRSCNRSVPCMEVISYAIQVLLNLSKYHKTVEAVYAVENS-VNTLLDLLQIYRE 2927 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136279.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136279.2562.1 >prot_H-elongata_contig136279.2562.1 ID=prot_H-elongata_contig136279.2562.1|Name=mRNA_H-elongata_contig136279.2562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp ERARADPSQILGIKVKHALWDLEHGTRLTVIIRACIALELTSRYSRVCCEback to top mRNA from alignment at H-elongata_contig136279:107..1765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136279.2562.1 ID=mRNA_H-elongata_contig136279.2562.1|Name=mRNA_H-elongata_contig136279.2562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1659bp|location=Sequence derived from alignment at H-elongata_contig136279:107..1765- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136279:107..1765- >mRNA_H-elongata_contig136279.2562.1 ID=mRNA_H-elongata_contig136279.2562.1|Name=mRNA_H-elongata_contig136279.2562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig136279:107..1765- (Himanthalia elongata Himel1 dioecious)back to top |