mRNA_H-elongata_contig136109.2555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136109.2555.1
Unique NamemRNA_H-elongata_contig136109.2555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.530e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            PL+   V+ S++R  W  A+  EM G  ++ TF+ ++KLPEG KAV ++WVF YK D+ G+I
Sbjct:  220 PLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLI 281
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.860e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            PL+   V+ S++R  W  A+  EM G  ++ TF+ ++KLPEG KAV ++WVF YK D+ G+I
Sbjct:  736 PLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLI 797
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.900e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            PL+   V+ S++R  W  A+  EM G  ++ TF+ ++KLPEG KAV ++WVF YK D+ G+I
Sbjct: 1289 PLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLI 1350
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5J6N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-10
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            PL+      S+++  W  AM  E  GL ++ TFT + KLPEG KAV S+WVFSYK ++ GMI
Sbjct:  273 PLTYKDAMDSKYKVLWEAAMMKEKGGLDKAGTFTKIGKLPEGRKAVSSKWVFSYKTNEKGMI 334
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5KHS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.830e-10
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            PL+  G   S+++  W  AM  E  GL ++ TFT + KLPEG KAV S+WVFSY+ ++ GMI
Sbjct:  467 PLTYKGAMDSKYKVLWEAAMMKENGGLGKAGTFTKIGKLPEGRKAVTSKWVFSYETNEKGMI 528
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5JIZ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.240e-10
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 KVPPLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            +V P++   V  S+++  W  AM  E+ G  ++ TFT + +LPEG KA+GS+WVFS+K ++ G+I
Sbjct:   49 EVVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLI 113
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.630e-9
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 KVPPLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            K  P++   V  S+++  W  AM  E+ G  ++ TFT + +LPEG KA+GS+WVFS+K ++ G+I
Sbjct:  645 KAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLI 709
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.130e-9
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            P++   V  S+++  W  AM  E+ G  ++ TFT + +LPEG KA+GS+WVFS+K ++ G+I
Sbjct:  122 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLI 183
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.180e-9
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 PLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            P++   V  S+++  W  AM  E+ G  ++ TFT + +LPEG KA+GS+WVFS+K ++ G+I
Sbjct:   16 PMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLI 77
[Close]
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.220e-9
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 KVPPLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVGSRWVFSYKQDKAGMI 195
            K  P++   V  S+++  W  AM  E+ G  ++ TFT + +LPEG KA+GS+WVFS+K ++ G+I
Sbjct:  210 KAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLI 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136109.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUR2_9PHAE8.530e-1145.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE9.860e-1145.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE9.900e-1145.16Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N2_9PHAE1.340e-1048.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHS9_9PHAE1.830e-1048.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIZ8_9PHAE2.240e-1041.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE1.630e-941.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE2.130e-941.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE2.180e-941.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE2.220e-941.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136109contigH-elongata_contig136109:1570..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.5078564-CDS-H-elongata_contig136109:1569..17641622929808.5078564-CDS-H-elongata_contig136109:1569..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136109 1570..1764 +
1691679165.5130224-CDS-H-elongata_contig136109:1569..17641691679165.5130224-CDS-H-elongata_contig136109:1569..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136109 1570..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136109.2555.1prot_H-elongata_contig136109.2555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136109 1570..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136109.2555.1

>prot_H-elongata_contig136109.2555.1 ID=prot_H-elongata_contig136109.2555.1|Name=mRNA_H-elongata_contig136109.2555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
KVPPLSVAGVQKSRFRSAWLNAMNAEMKGLTESNTFTVLDKLPEGEKAVG
SRWVFSYKQDKAGMI
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mRNA from alignment at H-elongata_contig136109:1570..1764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136109.2555.1 ID=mRNA_H-elongata_contig136109.2555.1|Name=mRNA_H-elongata_contig136109.2555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig136109:1570..1764+ (Himanthalia elongata Himel1 dioecious)
AAGGTACCGCCTTTATCTGTAGCGGGTGTTCAGAAATCTCGTTTCCGTAG
TGCGTGGTTGAATGCGATGAATGCCGAGATGAAGGGTCTCACAGAATCGA
ACACTTTCACGGTGTTGGACAAGTTGCCGGAAGGTGAGAAAGCAGTTGGT
TCGAGGTGGGTGTTTTCATACAAGCAGGATAAAGCCGGAATGATC
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Coding sequence (CDS) from alignment at H-elongata_contig136109:1570..1764+

>mRNA_H-elongata_contig136109.2555.1 ID=mRNA_H-elongata_contig136109.2555.1|Name=mRNA_H-elongata_contig136109.2555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig136109:1570..1764+ (Himanthalia elongata Himel1 dioecious)
AAGGTACCGCCTTTATCTGTAGCGGGTGTTCAGAAATCTCGTTTCCGTAG
TGCGTGGTTGAATGCGATGAATGCCGAGATGAAGGGTCTCACAGAATCGA
ACACTTTCACGGTGTTGGACAAGTTGCCGGAAGGTGAGAAAGCAGTTGGT
TCGAGGTGGGTGTTTTCATACAAGCAGGATAAAGCCGGAATGATCAAGGT
ACCGCCTTTATCTGTAGCGGGTGTTCAGAAATCTCGTTTCCGTAGTGCGT
GGTTGAATGCGATGAATGCCGAGATGAAGGGTCTCACAGAATCGAACACT
TTCACGGTGTTGGACAAGTTGCCGGAAGGTGAGAAAGCAGTTGGTTCGAG
GTGGGTGTTTTCATACAAGCAGGATAAAGCCGGAATGATC
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