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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_001940.1 |
| Exons | 4 |
| Model size | 414 |
| Cds size | 414 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929808.3704154-CDS-H-elongata_contig136072:181..269 | 1622929808.3704154-CDS-H-elongata_contig136072:181..269 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 182..269 - |
| 1691679165.461776-CDS-H-elongata_contig136072:181..269 | 1691679165.461776-CDS-H-elongata_contig136072:181..269 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 182..269 - |
| 1622929808.3856602-CDS-H-elongata_contig136072:635..726 | 1622929808.3856602-CDS-H-elongata_contig136072:635..726 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 636..726 - |
| 1691679165.4717274-CDS-H-elongata_contig136072:635..726 | 1691679165.4717274-CDS-H-elongata_contig136072:635..726 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 636..726 - |
| 1622929808.3986406-CDS-H-elongata_contig136072:1182..1265 | 1622929808.3986406-CDS-H-elongata_contig136072:1182..1265 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 1183..1265 - |
| 1691679165.4811368-CDS-H-elongata_contig136072:1182..1265 | 1691679165.4811368-CDS-H-elongata_contig136072:1182..1265 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 1183..1265 - |
| 1622929808.4127414-CDS-H-elongata_contig136072:1461..1613 | 1622929808.4127414-CDS-H-elongata_contig136072:1461..1613 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 1462..1613 - |
| 1691679165.4913185-CDS-H-elongata_contig136072:1461..1613 | 1691679165.4913185-CDS-H-elongata_contig136072:1461..1613 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig136072 1462..1613 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136072.2553.1 >prot_H-elongata_contig136072.2553.1 ID=prot_H-elongata_contig136072.2553.1|Name=mRNA_H-elongata_contig136072.2553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
RPDHDDRDRRWRGGWRSGVSVGIMAKDASRSDPAEGHDAPRGVSERRGRG
RRGGGGGGGGGGGEKKMGGGGGGGGRSRERKRRSRSLSQGGEDSARSLSR
SISRDRRSRRSSRSHSPSFRRSRSRDRAVWRYAFALP* back to topmRNA from alignment at H-elongata_contig136072:182..1613- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig136072.2553.1 ID=mRNA_H-elongata_contig136072.2553.1|Name=mRNA_H-elongata_contig136072.2553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1432bp|location=Sequence derived from alignment at H-elongata_contig136072:182..1613- (Himanthalia elongata Himel1 dioecious)
AGGCCTGACCACGATGACCGCGATCGGCGCTGGCGTGGAGGCTGGCGATC
CGGAGTGAGCGTTGGGATCATGGCGAAAGACGCCAGCCGATCAGATCCCG
CAGAGGGGCACGACGCACCGAGGGGTGTTTCGGAACGACGGGGCCGAGGC
CGGTACAGGGACTTGGACGACGAGAAGGAGTTCCACAGGGAGCGCATGCG
AGGGAGGTGAGATGGAAATATAAAGGGGGGGGGGGGGGGGGGGAGGAGCA
GGGGTAGGGGAATCGCAGGACTAAAGGTAATAACTTATTTTTTGTCTTTT
TCGTGCTGCAACGCATCTCGTTNNNNNNNNNNGGGGGGAGAGGGAGAGGA
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAAATGGGG
GGGGGGGGGGGGGGGGGGGGGAGGAGCAGGGGTAGTCGAATCGCAGGACT
AAAGATAATAACTTATTTCTTGTCTGTCTCGTGCTGCAACGCATCCCGAT
CTTTGTACTGGCCGTTTGTTGATGTTGATTTCAAGGGCATTATTGACAGT
GCTACATGGTTACACGATGGGGTGGGGTGGATAATGGCTGGGATTTGGAT
GAGGAGGTGGGAGGGACAGATTGTCGCGTGATTTATGCGATCGTTTTTGG
CTGTATTGCTCGTTAGTTTAGGAGGCGTAGGAACGAGGGGGGGAGGGGGG
GGGATTAGGCTTCTGACCTACAAGATATGAATGATGTTTTACTTGTTTGA
GGGTTGTCAATGACGAAAAGCGACGGTACTATGTAAGGCCGCAGTTGTAT
TTCCCTCTGGGATTCGATCTTCTATGTCGTCCCTTTTAATGACACGACGC
GATTCGGTGTCTTACTCTTGCAGGAGGAGTTCTAGAGAACGGAAGCGTCG
TAGCCGCAGCCTGAGCCAGGGGGGTGAAGACAGCGCCAGGAGTCTCAGCC
GGAGCATAAGCAGGGACAGACGATCCAGGTGCTAACAGGCGCTCGTTGAG
CTGAGCCGTACTCGGTTCATTAGGAGATAGGGTATCATCTCCCTATGGGA
TTATGAACTCTATCGAGTAATTATTTGCGCGTTCACCATGTGCGTGGGTG
CAAGCGACATGTGATCACGAGACACACGCTCTCGGTATGCTTCACCTTGT
CCCAGCTGAAATATCTTCCCCGTTGCTGGAATTCGTTCGATTCGACCTCA
GTATTTCCAATATTCAGTAGTAGAGAACGAGAAAGAGAAAGAGAACTGAT
TTGATCATTTGGTGCACCTTATCCCATTTCCCCCAAAAAATACACACACA
CACACACACACACGCCCACCGACGCTGCACGCGGGGACACGCAGACGGAG
CAGTCGAAGCCACAGCCCAAGCTTTCGGAGGAGCAGGAGTCGGGATCGCG
CCGTGTGGAGGTATGCATTCGCTCTACCATGA back to topCoding sequence (CDS) from alignment at H-elongata_contig136072:182..1613- >mRNA_H-elongata_contig136072.2553.1 ID=mRNA_H-elongata_contig136072.2553.1|Name=mRNA_H-elongata_contig136072.2553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig136072:182..1613- (Himanthalia elongata Himel1 dioecious)
AGGCCTGACCACGATGACCGCGATCGGCGCTGGCGTGGAGGCTGGCGATC
CGGAGTGAGCGTTGGGATCATGGCGAAAGACGCCAGCCGATCAGATCCCG
CAGAGGGGCACGACGCACCGAGGGGTGTTTCGGAACGACGGGGCCGAGGC
CGAGGCCTGACCACGATGACCGCGATCGGCGCTGGCGTGGAGGCTGGCGA
TCCGGAGTGAGCGTTGGGATCATGGCGAAAGACGCCAGCCGATCAGATCC
CGCAGAGGGGCACGACGCACCGAGGGGTGTTTCGGAACGACGGGGCCGAG
GCCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAA
ATGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGCAGGGGAGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAAATGGGGGGGGGGGGGGG
GGGGGGGGGGAGGAGCAGGGAACGGAAGCGTCGTAGCCGCAGCCTGAGCC
AGGGGGGTGAAGACAGCGCCAGGAGTCTCAGCCGGAGCATAAGCAGGGAC
AGACGATCCAGAACGGAAGCGTCGTAGCCGCAGCCTGAGCCAGGGGGGTG
AAGACAGCGCCAGGAGTCTCAGCCGGAGCATAAGCAGGGACAGACGATCC
AGACGGAGCAGTCGAAGCCACAGCCCAAGCTTTCGGAGGAGCAGGAGTCG
GGATCGCGCCGTGTGGAGGTATGCATTCGCTCTACCATGAACGGAGCAGT
CGAAGCCACAGCCCAAGCTTTCGGAGGAGCAGGAGTCGGGATCGCGCCGT
GTGGAGGTATGCATTCGCTCTACCATGA back to top
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