mRNA_H-elongata_contig136.2541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136.2541.1
Unique NamemRNA_H-elongata_contig136.2541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 1.370e-73
Identity = 153/258 (59.30%), Postives = 179/258 (69.38%), Query Frame = 1 
Query:  835 RREAADRLLTLGRRFSRHNAATMIQAAVRGVAVRCAAGHRIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESRS--------GGGVSTSFGVRSPARSLKAMNLLMNELS 1584
            R EAA R L LGRRFSR  AATMIQAA RG+A R   G  IA ARA+I KA   A ADPSQILG +V +AL  LEH T LT IIRACI LELTSRYSKVCCEVMA SRCPQVLYDL+ GLNRSPPHQK+  Y + T RNIAQRGDGL  LLAAPP +  T++ LLQM+R   EVFL   R+LQQL++A++PTKD     +H  RLE IR +LARK AVE++S                     ++SLKA+  L++EL+
Sbjct: 2252 REEAAARWLVLGRRFSRAKAATMIQAAARGMAARKKTGPGIASARARIEKANANALADPSQILGTRVNDALTALEHCTHLTAIIRACIALELTSRYSKVCCEVMARSRCPQVLYDLIRGLNRSPPHQKILKYAITTFRNIAQRGDGLPALLAAPPVAAETYVDLLQMYRERQEVFLPTVRLLQQLLNAHKPTKDECNSVKHRPRLESIRDILARKAAVEAKSIAARGXXXXXXXXXXXXXXRASKSLKAVQGLLDELA 2509
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 9.300e-72
Identity = 141/222 (63.51%), Postives = 166/222 (74.77%), Query Frame = 1 
Query:  835 RREAADRLLTLGRRFSRHNAATMIQAAVRGVAVRCAAGHRIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESRS 1500
            R EAA R L LGRRFSR  AATMIQAA RG+A R      I+ ARA+I +A   A ADPSQ+LG +V +AL  LEH T LT IIRACI LELTSRYSKVCCEVMA SRCPQVLYDL+ GLNRSPPHQK+  Y++ T RNIAQRGDGL  LLAAPP +  T++ LLQM+R   EVFL   R+LQQL++A++PTKD     +H  RLE +R +LARK AVE++S
Sbjct: 2133 REEAAARWLVLGRRFSRTKAATMIQAAARGMAARKKTDPGISSARARIERANANALADPSQVLGTRVNDALTALEHCTHLTAIIRACIALELTSRYSKVCCEVMARSRCPQVLYDLIRGLNRSPPHQKILKYVITTFRNIAQRGDGLPALLAAPPVAAETYVDLLQMYRERQEVFLPTVRLLQQLLNAHKPTKDKCNSVKHRPRLESMRDILARKAAVEAKS 2354
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A7S3YG01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG01_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 7.480e-17
Identity = 55/182 (30.22%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:  964 ARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESRSGGG 1509
            AR ++ +A  +ARA+P+Q LG++ ++AL  L     +T I + C+ LEL++ YS+ CCE    +     +++L+   NRS PHQ++  ++L+ L N+  R   L   +A  P  V   + ++Q  R   + FLL+  ++  +  + R  +     P   +RL GI ++L RK ++ ++ G G
Sbjct:    6 ARLRVERANAQARAEPAQRLGSRTRSALEQLLATKSVTQIKKCCVTLELSTTYSRRCCESFVFAEAHLRMFELMRSCNRSLPHQELLKHVLRILANLT-RYPHLVGTVAQAPGCVEVLVDMMQFFRELEDTFLLSVGLVATMARSERRIRQQAAAPEIAKRLGGILSILRRKFSLATKHGVG 186
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A0D2MQ02_9CHLO (Putative Abnormal spindle-like microcephaly-associated protein like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MQ02_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 7.210e-13
Identity = 63/191 (32.98%), Postives = 94/191 (49.21%), Query Frame = 1 
Query:  931 VRCAAGHRIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVS----AYRPTKDAFKEPRHFQRLEGIRTVLARKTAVE 1491
            VR  AG     AR ++  AA  A   P + +GA+ + AL +L        +I A   +E ++RYSK CC ++AES     L   + G NRS PH ++    L  L N A+  +    +LAAP   VA     +QM R+  ++FLL   +L +L S    A     DA   P   ++ EG+  ++ARK  +E
Sbjct: 1091 VRRGAGRSGREARRRLEAAAAAAEGAPHRRIGARAREALKVLLASKSCAQVITAVAAMEFSTRYSKECCTLIAESGGVAALLQFMRGCNRSKPHAEMLRLALAVLHNCARWRELAPPVLAAPEC-VAVLSERMQMFRDMEDIFLLVVGLLARLASTDAGALAVAADA--GPAFLRQWEGVAAIIARKLDME 1278
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A2R6X111_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X111_MARPO)

HSP 1 Score: 80.9 bits (198), Expect = 5.510e-12
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 1 
Query: 1012 SQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESRS 1500
            S  LG ++  AL +L     +T I+  C  +++ + +SK CC+ +AE+     + +L+  +NRSPPH++V  + L  L+N+A     LR+ +A  P +++     L M R   ++F+ A  +L+Q+           +EP+ F+RL+ +   L RK  VE R+
Sbjct: 2108 SDRLGNRLTEALALLLGQKTVTGILSICRTIDVATHHSKSCCDRLAEAGAVTKILNLIQTINRSPPHEQVLKHALTILKNLAHHLH-LRLRIAEAPGAISIITEQLHMFRYKEDIFMRAMEVLKQVCELPVGIAVLQREPQIFRRLQLVAQSLDRKIQVEKRN 2269
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A2K1IF47_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IF47_PHYPA)

HSP 1 Score: 76.3 bits (186), Expect = 1.420e-10
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1 
Query:  997 ARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPR-HFQRLEGIRTVLARKTAVESRS 1500
            A  D SQ LG ++  AL  L     ++ I+  C  +++ + +SK+CCE +AE      L  L+  +NRSPPH++V  + L  L N+A R   L   +A+   SV   +  L + RN   VF  A RILQ  VS      D  ++     +RL+ +  +L R+  VE R+
Sbjct: 1458 ATVDNSQRLGNRLTEALSQLLSQKTVSGILHTCATIDMATEHSKLCCERLAEGGAVNKLLQLIQTVNRSPPHEQVLKHALSILGNLA-RFPNLAFSVASEHDSVNIIVEQLLIFRNKEVVFSKAMRILQH-VSRTPGCVDVIQQDMVAIRRLQNVAILLERRFEVEKRN 1624
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A2V0PC77_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PC77_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.490e-10
Identity = 59/220 (26.82%), Postives = 105/220 (47.73%), Query Frame = 1 
Query:  964 ARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKE--PRHFQRLEGIRTVLARK--------TAVESRSGGGVSTSFGVR---SPARSLKAMNLLMNELS 1584
            ARA++  AA  A   P + +G + + AL +L    + T +I A   +E ++RYS+ CC ++AES     L   +   NRS PH ++    L  L N+A+  +    +L AP   VA     LQM R+  +VFL    +L +L ++        +   P   ++ EG+ +++ R+          +E + G   S     R   S A+ L+A++ ++  ++
Sbjct: 2056 ARARLEAAAAAAECAPHKRIGVRAREALKVLLASKQCTQVITAVSAIEFSTRYSRDCCALIAESGGVPALLSFMRSCNRSKPHAEMLRLALGVLHNVARWRELAPAVLGAPEC-VAVLSERLQMFRDMEDVFLSVVGLLSKLAASDDGALAVAEAAAPSFLRQWEGVASIIGRRIDMERKYIARLEGQKGSDASAREATRKMVSGAKQLEALSTVIRRVA 2274
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: D8UIV3_VOLCA (Microtubule-associated protein Asp n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UIV3_VOLCA)

HSP 1 Score: 70.9 bits (172), Expect = 6.700e-9
Identity = 89/291 (30.58%), Postives = 130/291 (44.67%), Query Frame = 1 
Query:  724 ACTVIAAWWRSVHGVEGFRRLRHGVVVLQSIVRGR-HARREAADRLLTLGRRFSRHNAATMIQAAVRGVAVRCAAGHRIAVARAKIMKAAERARADPSQILGAKVKNAL-WILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQ----RGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKD-AFKEP----RHFQRLEGIRTVLARKTAVE----SRSGGGVSTSFGVRSPARSL 1551
            A  VI + WR       + R+R  V V+ SI+     ARRE     L L RR  R      +QAA+     + +A  ++  AR ++ +AA  AR  P + +G + + AL  +L     L  ++ A  +LE+++RYS+ CC+++A+      L   V   NRS PH  V +  L  L NI      R D     +      +A     LQ  R+  EVF     +LQ+L +    T+D A   P    RH+   EGI  VL RK  +E     R  G   +    R  AR L
Sbjct: 1274 AAIVIQSAWRGYVVHIKYCRIRWAVEVINSILLPIFRARRE-----LALLRRLHR----ARVQAAI--TLQKSSARPKVQEARCRLEQAAREARKAPHRHIGNRTREALDSLLRPNRNLPQVLAAVEVLEVSTRYSRDCCKLIAQDDGVTALLRFVRSCNRSKPHIDVLIRTLAALHNICSCPSIRYDTFVPDVFHAEECLAVLSERLQYFRDTEEVFNTTVTLLQRLTA----TEDLAANVPAAVLRHW---EGIHQVLFRKADIERKYLERLEGQKGSDVSARESARKL 1546
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: A0A1U8B8T3_NELNU (abnormal spindle-like microcephaly-associated protein homolog isoform X1 n=6 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B8T3_NELNU)

HSP 1 Score: 70.5 bits (171), Expect = 8.240e-9
Identity = 63/240 (26.25%), Postives = 109/240 (45.42%), Query Frame = 1 
Query:  781 RLRHGVVVLQSIVRGRHARREAADRLLTLGRRFSRHNAATMIQAAVRGVAVRCAAGHRIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESRS 1500
            R RH +VV+QS  +G  AR+E+  +LL L                                 R ++ K+A  A  D +  L  ++  AL  L     ++ I+  C  L++ +R+S+ CCE++  +   + L  L+   +RS P Q+V  + L TLRN+A+       LL    +    F    ++ RN  E + +A+ +L++L S  +  +   + P   +RL  +   L RKT+ E R+
Sbjct: 1204 RERHRIVVIQSYWKGYIARKESKGKLLDL---------------------------------RIRVQKSA--ANVDDNMRLINRLVAALSELLSIRSVSSILHTCATLDMATRHSQKCCEMLVSAGAIETLLKLIRSTSRSIPDQEVLKHALSTLRNLARYPHLAEALLDTHGSIETIFW---ELFRNKEEGYFIASELLKKLCSRQKGFEMVHQFPYLLKRLHTLVEDLKRKTSNEKRN 1405
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BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Match: UPI001F087A66 (abnormal spindle-like microcephaly-associated protein n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F087A66)

HSP 1 Score: 65.5 bits (158), Expect = 3.240e-7
Identity = 76/273 (27.84%), Postives = 120/273 (43.96%), Query Frame = 1 
Query:  733 VIAAWWRSVHGVEGFRRLRHGVVVLQSIVRGRHARREAADRLLT-------LGRRFSR-HNAATMIQAAVRGVAVRCAAGH-RIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACIILELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRNIAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHH---------EVFLLAARILQQLVSAYRPTKDAFKEPRHFQRLEGIRTVLARKTAVESR 1497
            +I  W R+      F   R  VV  Q + R   ARR  A R+L        L RR  R        QA  RG A R    H R+   R ++   ++ A+ +    L  K   A+  L      + I+ A   LEL +R S  CCE++ ES    V++ L+   NRS P  +V  Y ++ L N+++    +  + A    SV T + LLQ++R             +F  A  +L  L+   R   +  K P+  +R++ I ++ ARK  +++R
Sbjct: 2718 LIQRWVRAGQQRRLFLEERRKVVTAQRVARRWLARRHRAARVLQQHARKFLLLRRQQRVERGIIKAQALWRGHASRKLHDHHRVVAVRHRLRIVSDGAQEEDR--LCHKTSTAIDHLLQYKHFSYILTALKNLELATRLSPECCEMLVESGATLVIFTLIRSCNRSVPCMEVISYAIQVLLNLSKYHKTVEAVYAVE-NSVNTLLDLLQIYREKAGDKVAEKGGSIFTKACFLLALLLQDPRRALEVKKLPKALERIQSIYSLTARKHKMDAR 2987
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136.2541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LLN9_ECTSI1.370e-7359.30Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE9.300e-7263.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YG01_HETAK7.480e-1730.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0D2MQ02_9CHLO7.210e-1332.98Putative Abnormal spindle-like microcephaly-associ... [more]
A0A2R6X111_MARPO5.510e-1230.06Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A2K1IF47_PHYPA1.420e-1033.14Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A2V0PC77_9CHLO1.490e-1026.82Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
D8UIV3_VOLCA6.700e-930.58Microtubule-associated protein Asp n=1 Tax=Volvox ... [more]
A0A1U8B8T3_NELNU8.240e-926.25abnormal spindle-like microcephaly-associated prot... [more]
UPI001F087A663.240e-727.84abnormal spindle-like microcephaly-associated prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136contigH-elongata_contig136:13445..17524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.7
Seed ortholog evalue1.1e-68
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categorymitochondrion
Exons9
Model size1880
Cds size1542
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.412081-UTR-H-elongata_contig136:13444..134951622929807.412081-UTR-H-elongata_contig136:13444..13495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 13445..13495 +
1691679165.100398-UTR-H-elongata_contig136:13444..134951691679165.100398-UTR-H-elongata_contig136:13444..13495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 13445..13495 +
1622929807.583903-UTR-H-elongata_contig136:17237..175241622929807.583903-UTR-H-elongata_contig136:17237..17524Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 17238..17524 +
1691679165.214738-UTR-H-elongata_contig136:17237..175241691679165.214738-UTR-H-elongata_contig136:17237..17524Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 17238..17524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.4258175-CDS-H-elongata_contig136:13495..140471622929807.4258175-CDS-H-elongata_contig136:13495..14047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 13496..14047 +
1691679165.1148994-CDS-H-elongata_contig136:13495..140471691679165.1148994-CDS-H-elongata_contig136:13495..14047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 13496..14047 +
1622929807.437947-CDS-H-elongata_contig136:14356..144451622929807.437947-CDS-H-elongata_contig136:14356..14445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 14357..14445 +
1691679165.133334-CDS-H-elongata_contig136:14356..144451691679165.133334-CDS-H-elongata_contig136:14356..14445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 14357..14445 +
1622929807.459725-CDS-H-elongata_contig136:14615..148321622929807.459725-CDS-H-elongata_contig136:14615..14832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 14616..14832 +
1691679165.1453779-CDS-H-elongata_contig136:14615..148321691679165.1453779-CDS-H-elongata_contig136:14615..14832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 14616..14832 +
1622929807.473882-CDS-H-elongata_contig136:15064..151861622929807.473882-CDS-H-elongata_contig136:15064..15186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15065..15186 +
1691679165.1570954-CDS-H-elongata_contig136:15064..151861691679165.1570954-CDS-H-elongata_contig136:15064..15186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15065..15186 +
1622929807.4879231-CDS-H-elongata_contig136:15501..155751622929807.4879231-CDS-H-elongata_contig136:15501..15575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15502..15575 +
1691679165.1694865-CDS-H-elongata_contig136:15501..155751691679165.1694865-CDS-H-elongata_contig136:15501..15575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15502..15575 +
1622929807.5043492-CDS-H-elongata_contig136:15894..160151622929807.5043492-CDS-H-elongata_contig136:15894..16015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15895..16015 +
1691679165.1782618-CDS-H-elongata_contig136:15894..160151691679165.1782618-CDS-H-elongata_contig136:15894..16015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 15895..16015 +
1622929807.529886-CDS-H-elongata_contig136:16243..163491622929807.529886-CDS-H-elongata_contig136:16243..16349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 16244..16349 +
1691679165.1870277-CDS-H-elongata_contig136:16243..163491691679165.1870277-CDS-H-elongata_contig136:16243..16349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 16244..16349 +
1622929807.546582-CDS-H-elongata_contig136:16683..167641622929807.546582-CDS-H-elongata_contig136:16683..16764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 16684..16764 +
1691679165.1959114-CDS-H-elongata_contig136:16683..167641691679165.1959114-CDS-H-elongata_contig136:16683..16764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 16684..16764 +
1622929807.5701861-CDS-H-elongata_contig136:17057..172371622929807.5701861-CDS-H-elongata_contig136:17057..17237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 17058..17237 +
1691679165.2046795-CDS-H-elongata_contig136:17057..172371691679165.2046795-CDS-H-elongata_contig136:17057..17237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 17058..17237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136.2541.1prot_H-elongata_contig136.2541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136 13496..17237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136.2541.1

>prot_H-elongata_contig136.2541.1 ID=prot_H-elongata_contig136.2541.1|Name=mRNA_H-elongata_contig136.2541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=514bp
MAVSRYRRNVEAAIAIQATVRSALAAARYRRSICAVKTIQVFWRGTTAVA
HYRKQLRAIVAIQVRWRGVISVYRYRRSVGAAITIQATVRSTLAAARYHR
AISAMQTIQAFWRGAAATAHYRQQLRAVVTIQAHWRGAMAVSRYRRIVEA
AIAIQATVRSALAAARYRRGICAVQTIQVFWRGKAAIATQTTAHSALAAA
RYRQAISAAQTIQRWWRSEVPKAAACTVIAAWWRSVHGVEGFRRLRHGVV
VLQSIVRGRHARREAADRLLTLGRRFSRHNAATMIQAAVRGVAVRCAAGH
RIAVARAKIMKAAERARADPSQILGAKVKNALWILEHGTRLTVIIRACII
LELTSRYSKVCCEVMAESRCPQVLYDLVNGLNRSPPHQKVRMYILKTLRN
IAQRGDGLRVLLAAPPTSVATFMTLLQMHRNHHEVFLLAARILQQLVSAY
RPTKDAFKEPRHFQRLEGIRTVLARKTAVESRSGGGVSTSFGVRSPARSL
KAMNLLMNELSAQ*
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mRNA from alignment at H-elongata_contig136:13445..17524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136.2541.1 ID=mRNA_H-elongata_contig136.2541.1|Name=mRNA_H-elongata_contig136.2541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4080bp|location=Sequence derived from alignment at H-elongata_contig136:13445..17524+ (Himanthalia elongata Himel1 dioecious)
CGCCAACAGCTTCGCGCCGTCGTCGCTATCCAGGCGCACTGGAGAGGTGC
CATGGCAGTGTCTCGCTACCGCCGAAATGTGGAGGCCGCGATTGCAATCC
AGGCCACGGTCCGCAGCGCCCTGGCGGCTGCTCGGTATCGCCGGTCCATC
TGTGCAGTTAAAACCATCCAGGTCTTCTGGCGGGGCACAACCGCCGTAGC
GCACTATCGCAAACAGCTCCGTGCCATTGTCGCCATCCAGGTGCGCTGGA
GAGGTGTCATATCAGTGTATCGTTACCGCCGAAGCGTGGGGGCCGCGATT
ACTATCCAGGCCACAGTCCGCAGCACCCTGGCCGCTGCTCGATATCACCG
GGCCATCTCTGCGATGCAAACGATCCAGGCCTTCTGGCGGGGCGCAGCCG
CCACAGCCCACTATCGCCAACAGCTCCGCGCCGTCGTCACTATCCAGGCG
CACTGGAGAGGTGCTATGGCAGTGTCTCGCTACCGCCGAATCGTGGAGGC
CGCGATTGCAATCCAGGCCACAGTCCGCAGCGCCCTGGCGGCTGCTCGGT
ATCGCCGGGGCATCTGTGCAGTGCAAACGATCCAGGTCTTCTGGCGAGGC
AAGGTCGCCCTAGCGCGCTACCGTAAACAGCTTTGCGCGGTCGTCGCCCT
TCAGGCGAGCTGGAGAGGTGCCATGGCAGTGTCTCGCTACCGCCGAAGTA
TAGAGGCCGCGATTGATATCCAGGCCACGGTCCGCAGCGCCCTGGCGGCT
GCTCGGTATCGCCGGGCCATCTCGGCGATGCAAACGATCCAGGTCTTCTG
GCGGGGCACAGCCGCCGTAGCGCACTACCGCAAACAGCTAGGTGCCATCT
ATATTATCCAGACGCGCTGGAGAGGTGCCGTGGCAGTGTCTCGCTACCGC
CGAAGTTTGGAGGCCGCGATTGCTACCCAGACCACTGCCCACAGCGCCCT
GGCGGCTGCTCGATATCGCCAGGCCATCTCTGCGGCACAAACAATTCAGA
GGTAAATGCGTACGCAACACCTGTTTCGGAGCGGTCGATTTTCTCATAGG
TACGGGGAGTTATCCTACAACCGGAAATACACACTTCTCCCCTTTGACGA
TCCAACAACCTTGGACCGTATCATACTCTTCTAATATTTTCCTGATTTCG
ATCTGAAAAAACAACATGTAGGTGGTGGCGATCGGAAGTGCCCAAAGCCG
CGGCGTGCACCGTGATCGCCGCCTGGTGGCGCTCCGTGCACGGCGTAGAG
GGATTCCGGCGGTTGCGCCATGGTGTCGTGGTCCTTCAGAGCATCGTTCG
CGGTAGGCATGCTCGGCGAGAGGCAGCGGACCGTTTGCTTACCCTCGGTC
GTCGATTCTCGAGGCACAACGCGGCAACAATGATTCAGGTGTGCTTAAGC
TGAAAATTCGAGAAGACATGTTTGACCTCGTGCGTTAGGACGGTACCCCA
AAGTTGTGGTACGCTTCCTATTTTGATATGAACACAAAAAATGAAAGACC
GTCGACAACCGTTGGGCACCGAAGTAGCTAGCTTTTCCCGATCCCATATA
GGCTTGTTATTTTCCAAATACGCTGAAAGAAACGGCACAAGGTTAAATTC
TTAATTATCGTCCTATTCAGGCGGCAGTACGTGGCGTTGCGGTGCGGTGC
GCAGCTGGTCATAGGATAGCGGTCGCCAGAGCCAAGATCATGAAAGCAGC
CGAGAGGGCTCGTGCAGACCCGTCCCAGATTCTAGGAGCCAAGTGAGTTC
CCAAGTCAAAGTTAGGCACGATAGGGGATATAAGCTCCACCACCGCCTTA
TCATCTGCTGTTGTTTTCCTTTCTCGTCGAGATTCTTGACTCCTGAAACG
CCTGTTTGTCAGTTGTTGCCAGTGCCTGTTCGTCGTGATGTTTGCGTTTG
CCGGGCGAAGCGAAGAGGAGGTACCTAAAATATGGCCACAACAGCATATT
AAATTACAGTCCATTATAACTGATACGCAGGAGAAGAAATAAAATAAAAG
TAGGTGTAATAAATACATGCGCCATGCCAACGCCTCCTTCTTTCCCCTAT
CCTGCAGGGTGAAGAACGCGCTGTGGATCTTAGAGCACGGAACGCGGCTG
ACGGTCATTATCCGTGCCTGCATTATTCTTGGTGAGGGATGGACCGGGTC
TGCCTTGGCGTTGGGAACAAACAGAAGAGCGAGGCCTTAAGCTACTGCCG
ATAGCCCTACTGCGATCGATTCGCGTAGGGCCTCAACTTTTCTCTCAGGC
GTGTCGTCGACTTTGCGTGGAATTCGACCGCCGATGTCTCGTTGGGAAAG
CGGCAATACTCATGTAGGTGAAGATCTAGTGCTGCGTCCATGGTGCCGCG
TGAAAAATATGCCCTCCACAGCCCAAGCCACGACTTTGCCTCTCATACCT
CATGCCTCAATTCTCGACCACGTCATTGTCCCCTCTTTGACGTGCCTTAG
AGCTCACATCGAGGTACTCAAAGGTATGCTGCGAGGTCATGGCTGAATCG
AGGTGCCCCCAGGTTCTATACGACCTGGTCAATGGCCTCAACCGGAGCCC
CCCACACCAAAAAGTTCGCATGTGGGTTTTTCGACTCTGTCTGAGCTAAG
ATTTACATCGCTACGTGTACGTGCCACCTTCGCCTCAATGCGCTATTTGT
ACGGGTAAATTCGCGCTGGTCTTACAGGTGTCGTTGGCATAAGTGTTGAA
AAAGTGTGATGCCTCGATCGGACCGACAACCATCGCCGCTCTGATTTTAT
CCTTTATTTTCTTTGCCACACATTCGCCGCCGTAATTTTTACTCGAAAGG
TACATACTGAAAACGTTGCGGAACATCGCGCAGAGGGGAGATGGTCTGCG
AGTGCTACTCGCAGCACCCCCCACATCCGTTGCCACCTTCATGACTCTCC
TGCAGGTGATGAAGGGGGCGCTACGGTACCTGATCAATAAGTGTGACACG
AAAACAACTTCTACCAACGCTGTGTTTCTCTGGTGTGAGAAAAAAATGTT
CGTACATTGAAGAGACTCCATAATATTTCTAAATGCTACAGCTCCTTGAC
TGTGATATGAATCCCTCCGGCCCTGCTCCCGCCCGGTGTTGACTGCTACC
GCGCCATCACCTTTGTCGTGAATCTTGCGGTAGTAGTCGTACATACACGC
GGATTTCAAGGCTAACCTTTAAGCCTACACTCTCACAGCATCGTTTACAC
TCTCTTAACTCTTCGATTCTGGTGTTGTCTTGATGTCAGATGCACCGTAA
CCATCACGAAGTGTTCCTGCTGGCAGCCCGCATACTTCAGCAGCTCGTAT
CGGCTTATCGTCCAACAAAGGTCCGTGGCTTTATCTTGTTTGTATCGTGT
GATTGAAATAAATGTTTTTCTCAGGAATAGCCCTCATTGCGCGGGATATT
GCTTATAACAGTAGCCTAGTTTACACGGCGGCGGCGAGGATTAAATATAA
TTTACCATAGCTCTACAGATCCAAATAATGGCTCGAGGTCTCAGCAGACT
CATTTCCTTCTCCATGAAGACAGGGCAAATGTATGTGCGTTATGGGGTAC
AAAGGTCTGTTATCACTCGCGTTAGAGCACAGTTGCTTGTTTTTCTACGC
TCGCCTGTTGCAGGACGCTTTCAAGGAGCCTAGACATTTCCAGCGCCTAG
AGGGCATACGGACAGTCTTGGCTCGAAAGACGGCGGTAGAGTCGAGGAGT
GGTGGCGGGGTTAGCACGAGCTTCGGCGTAAGGAGTCCAGCAAGATCCTT
GAAAGCTATGAACCTTCTTATGAACGAGTTGTCGGCGCAGTGAGGCCAAC
TTGTCCCTAGTGGTTACAAGCGCCGTGTTTGGCAATGTCTAGAGTGGAAG
AGGGCTGCAATGGATTCGAGGTTTGTTTTATAAACTATTTCTTGTGACGG
AAAGAGCTCACTCGAGGTCTACCGGTTTCGCTAGTTGCTCTCGATGGAAG
TTTACGCCCCAAAGAAAGCAATAAATTAGCAGAAAGCTATAATACCGTTG
CTTCAGTCTTAAGATAGAATCGCGTGCGGTGTGCGACCCCCTTTTGGCCC
CGCGACGGAAAAATAAAAGATATATGGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig136:13445..17524+

>mRNA_H-elongata_contig136.2541.1 ID=mRNA_H-elongata_contig136.2541.1|Name=mRNA_H-elongata_contig136.2541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3084bp|location=Sequence derived from alignment at H-elongata_contig136:13445..17524+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGTGTCTCGCTACCGCCGAAATGTGGAGGCCGCGATTGCAATCCA
GGCCACGGTCCGCAGCGCCCTGGCGGCTGCTCGGTATCGCCGGTCCATCT
GTGCAGTTAAAACCATCCAGGTCTTCTGGCGGGGCACAACCGCCGTAGCG
CACTATCGCAAACAGCTCCGTGCCATTGTCGCCATCCAGGTGCGCTGGAG
AGGTGTCATATCAGTGTATCGTTACCGCCGAAGCGTGGGGGCCGCGATTA
CTATCCAGGCCACAGTCCGCAGCACCCTGGCCGCTGCTCGATATCACCGG
GCCATCTCTGCGATGCAAACGATCCAGGCCTTCTGGCGGGGCGCAGCCGC
CACAGCCCACTATCGCCAACAGCTCCGCGCCGTCGTCACTATCCAGGCGC
ACTGGAGAGGTGCTATGGCAGTGTCTCGCTACCGCCGAATCGTGGAGGCC
GCGATTGCAATCCAGGCCACAGTCCGCAGCGCCCTGGCGGCTGCTCGGTA
TCGCCGGGGCATCTGTGCAGTGCAAACGATCCAGGTCTTCTGGCGAGGCA
AGATGGCAGTGTCTCGCTACCGCCGAAATGTGGAGGCCGCGATTGCAATC
CAGGCCACGGTCCGCAGCGCCCTGGCGGCTGCTCGGTATCGCCGGTCCAT
CTGTGCAGTTAAAACCATCCAGGTCTTCTGGCGGGGCACAACCGCCGTAG
CGCACTATCGCAAACAGCTCCGTGCCATTGTCGCCATCCAGGTGCGCTGG
AGAGGTGTCATATCAGTGTATCGTTACCGCCGAAGCGTGGGGGCCGCGAT
TACTATCCAGGCCACAGTCCGCAGCACCCTGGCCGCTGCTCGATATCACC
GGGCCATCTCTGCGATGCAAACGATCCAGGCCTTCTGGCGGGGCGCAGCC
GCCACAGCCCACTATCGCCAACAGCTCCGCGCCGTCGTCACTATCCAGGC
GCACTGGAGAGGTGCTATGGCAGTGTCTCGCTACCGCCGAATCGTGGAGG
CCGCGATTGCAATCCAGGCCACAGTCCGCAGCGCCCTGGCGGCTGCTCGG
TATCGCCGGGGCATCTGTGCAGTGCAAACGATCCAGGTCTTCTGGCGAGG
CAAGGCCGCGATTGCTACCCAGACCACTGCCCACAGCGCCCTGGCGGCTG
CTCGATATCGCCAGGCCATCTCTGCGGCACAAACAATTCAGAGGCCGCGA
TTGCTACCCAGACCACTGCCCACAGCGCCCTGGCGGCTGCTCGATATCGC
CAGGCCATCTCTGCGGCACAAACAATTCAGAGGTGGTGGCGATCGGAAGT
GCCCAAAGCCGCGGCGTGCACCGTGATCGCCGCCTGGTGGCGCTCCGTGC
ACGGCGTAGAGGGATTCCGGCGGTTGCGCCATGGTGTCGTGGTCCTTCAG
AGCATCGTTCGCGGTAGGCATGCTCGGCGAGAGGCAGCGGACCGTTTGCT
TACCCTCGGTCGTCGATTCTCGAGGCACAACGCGGCAACAATGATTCAGG
TGGTGGCGATCGGAAGTGCCCAAAGCCGCGGCGTGCACCGTGATCGCCGC
CTGGTGGCGCTCCGTGCACGGCGTAGAGGGATTCCGGCGGTTGCGCCATG
GTGTCGTGGTCCTTCAGAGCATCGTTCGCGGTAGGCATGCTCGGCGAGAG
GCAGCGGACCGTTTGCTTACCCTCGGTCGTCGATTCTCGAGGCACAACGC
GGCAACAATGATTCAGGCGGCAGTACGTGGCGTTGCGGTGCGGTGCGCAG
CTGGTCATAGGATAGCGGTCGCCAGAGCCAAGATCATGAAAGCAGCCGAG
AGGGCTCGTGCAGACCCGTCCCAGATTCTAGGAGCCAAGCGGCAGTACGT
GGCGTTGCGGTGCGGTGCGCAGCTGGTCATAGGATAGCGGTCGCCAGAGC
CAAGATCATGAAAGCAGCCGAGAGGGCTCGTGCAGACCCGTCCCAGATTC
TAGGAGCCAAGGTGAAGAACGCGCTGTGGATCTTAGAGCACGGAACGCGG
CTGACGGTCATTATCCGTGCCTGCATTATTCTTGGGTGAAGAACGCGCTG
TGGATCTTAGAGCACGGAACGCGGCTGACGGTCATTATCCGTGCCTGCAT
TATTCTTGAGCTCACATCGAGGTACTCAAAGGTATGCTGCGAGGTCATGG
CTGAATCGAGGTGCCCCCAGGTTCTATACGACCTGGTCAATGGCCTCAAC
CGGAGCCCCCCACACCAAAAAGTTCGCATAGCTCACATCGAGGTACTCAA
AGGTATGCTGCGAGGTCATGGCTGAATCGAGGTGCCCCCAGGTTCTATAC
GACCTGGTCAATGGCCTCAACCGGAGCCCCCCACACCAAAAAGTTCGCAT
GTACATACTGAAAACGTTGCGGAACATCGCGCAGAGGGGAGATGGTCTGC
GAGTGCTACTCGCAGCACCCCCCACATCCGTTGCCACCTTCATGACTCTC
CTGCAGGTACATACTGAAAACGTTGCGGAACATCGCGCAGAGGGGAGATG
GTCTGCGAGTGCTACTCGCAGCACCCCCCACATCCGTTGCCACCTTCATG
ACTCTCCTGCAGATGCACCGTAACCATCACGAAGTGTTCCTGCTGGCAGC
CCGCATACTTCAGCAGCTCGTATCGGCTTATCGTCCAACAAAGATGCACC
GTAACCATCACGAAGTGTTCCTGCTGGCAGCCCGCATACTTCAGCAGCTC
GTATCGGCTTATCGTCCAACAAAGGACGCTTTCAAGGAGCCTAGACATTT
CCAGCGCCTAGAGGGCATACGGACAGTCTTGGCTCGAAAGACGGCGGTAG
AGTCGAGGAGTGGTGGCGGGGTTAGCACGAGCTTCGGCGTAAGGAGTCCA
GCAAGATCCTTGAAAGCTATGAACCTTCTTATGAACGAGTTGTCGGCGCA
GTGAGACGCTTTCAAGGAGCCTAGACATTTCCAGCGCCTAGAGGGCATAC
GGACAGTCTTGGCTCGAAAGACGGCGGTAGAGTCGAGGAGTGGTGGCGGG
GTTAGCACGAGCTTCGGCGTAAGGAGTCCAGCAAGATCCTTGAAAGCTAT
GAACCTTCTTATGAACGAGTTGTCGGCGCAGTGA
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