mRNA_H-elongata_contig135928.2533.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135928.2533.1
Unique NamemRNA_H-elongata_contig135928.2533.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.970e-31
Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    7 RARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMR 510
            R +G+ + +AT NVRT+AV G +G GR   VL    R    V+G+QETRR+G + F  AG+ V+C G    E GG  G   VG+A++ S+ + +    EFI +RL+ + L L G   A+ F+ A  PTE   AS+K  FW  LD  V  +P  E ++VL+DANARTG R
Sbjct:   52 RQQGQLLRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT---ETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDR 214          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6H5JPX0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.260e-25
Identity = 61/171 (35.67%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 RARARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMR 510
            R + +GR + + T NVRT+A +GK+G GR  ++L    +    V+ LQE RR G + F  AG+ V C G        K+   GVG+A++ S+ + +     ++ +RL+ +  E+ G   A+ F+ AY PTE   A +K   W  LD  V  +   E +++LMD NARTG+R
Sbjct:   45 RRKRQGRLLGVTTWNVRTLAGNGKNGYGRAFNILHEAAKQDISVVKLQEIRRPGQTEFAAAGFRVSCCGT------DKRNIHGVGIAVKESLCKTSTFTTNYVDERLMAMRFEMTGHRGAVNFVAAYAPTEVAAADSKTELWGKLDSLVRRIRSKECVYILMDVNARTGVR 209          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A3S3P648_9ACAR (Endonuclease-reverse transcriptase-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P648_9ACAR)

HSP 1 Score: 67.0 bits (162), Expect = 8.340e-10
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   31 IATHNVRTMAVDGKHGVGRVLDVLD-VYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMRE 513
            IAT NVR M+  GK      LD++    DRL   ++G+ E   + +  F    ++VY SG    +      + GV       +TRA      ISDR++ +   +R +   IT L  Y PT   +      F++SL+ A+++VP+ + ++++ D NA+ G +E
Sbjct:   62 IATWNVRGMS-QGK------LDIIKREMDRLKIGLLGISELHWTDNGYFQSDDFTVYYSGHDNIK------RNGVAFIACKRVTRAIESYSTISDRIISI--RIRAKPLFITILQIYAPTSDASEDEIERFYSSLEEALQQVPKKDIIYIMGDFNAKVGCQE 208          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: W2SH60_NECAM (Uncharacterized protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2SH60_NECAM)

HSP 1 Score: 58.5 bits (140), Expect = 6.260e-8
Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 1
Query:   25 ITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEE 450
            +TI T+N RT+A +       + D++    ++ YDVIGL ETRR              C          K+G GGVG+ + TS+ +     E ++ R+ ++ +   G   A+T  V Y PT + +     AF+  L++   E
Sbjct:    1 MTICTYNARTLASEAA-----IEDLIMQAKKIKYDVIGLTETRRR------------TCD---------KRGVGGVGVLVNTSMAKNIDSFEELTTRIGRLRMRRCGPTPALTIFVTYAPTSSYDEEEVEAFYLDLEKFYRE 116          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6J2YH64_SITOR (craniofacial development protein 2-like n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YH64_SITOR)

HSP 1 Score: 59.3 bits (142), Expect = 8.150e-8
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
            D+  + ET++ G   +    Y++  SG     +  K+G  GVGL I           E+ISDR+L VTL +    + I  +  Y P  +++ + + +F+  L  AV+ +   +++ ++ D NAR G
Sbjct:   20 DICSISETKKKGKGKYEIDDYTLIYSGV----SRDKRGHSGVGLLIDRKYKDHIEKEEYISDRILLVTLNVN--KENIHLISVYAPDISKDRAERESFYEELQEAVDRIQAKDKIVIMGDLNARVG 139          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI0018D1B928 (craniofacial development protein 2-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1B928)

HSP 1 Score: 60.5 bits (145), Expect = 1.360e-7
Identity = 41/145 (28.28%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   73 HGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQA-GYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
            H  G++ +VL    R   D++G+ E R +G        GYS+  SG+   E+   K + GV L +  S  +     + I++R+L  T   + RA+ ++ +  Y PTE      K  F+  LD  + E+ R + + ++ D NA+ G
Sbjct:    2 HRDGKLEEVLREARRFSLDILGISEARWNGFGEETVGDGYSLLYSGKPNEED---KHEYGVALLLNKSAKQCLLNWKPINERIL--TARFKTRARNVSIIQCYAPTEDTECEKKDQFYLQLDETLREIKRKDIVVLMGDLNAKVG 141          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001D087C7A (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D087C7A)

HSP 1 Score: 58.5 bits (140), Expect = 2.110e-7
Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
            D+I L ET++ G  +     Y  + SG  G++   ++ + GV + I+       R  E +S+R +KVT++LRGR+  IT L  Y   +      K  F  +L   +E++P   ++ V  D NAR G
Sbjct:    2 DIIVLSETKKKGIGSEGLREYIHFFSG-VGKD---QRAKAGVSILIQNKYKNKIRSWEPLSERFIKVTIQLRGRS--ITILGVYALNDDATVQAKDNFEEALREIIEDIPNSHEIIVAGDLNARVG 121          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A8D8X691_9HEMI (Craniofacial development protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8X691_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 2.340e-7
Identity = 44/155 (28.39%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   43 NVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFN-QAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
            N+RTM+   + G  RV++  +       +++GL ETR +G      Q G ++  SG   +E+     Q GVG+ +     RA    + IS+R++  T     RA+ IT ++ Y PTE      K  F+ +LD  + ++ + +   ++ D NA+ G
Sbjct:   12 NIRTMS---EAGTLRVIE--EEMKNYNLEILGLNETRWNGFGEIRTQGGNTLIFSG---KEDENAPKQAGVGILMTEKSKRAMIDWKPISERMM--TARFNSRARKITMVICYAPTEDAEEEIKDMFYDTLDDTLRKIKKQDIRILMGDVNAKLG 156          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001D06624E (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D06624E)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-6
Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
            D+I L ET++ G  + +   Y  + SG  G++   ++ + GV + I        R  E +S+R +KVT++LRGR+  IT L  Y   +      K  F  +L   +E++P   ++ V  D NAR G
Sbjct:    6 DIIVLSETKKKGIGSESLREYIHFFSG-VGKD---QRAKAGVSILIHNKYKNKIRSWEPLSERFIKVTIQLRGRS--ITILGVYVLNDDAAVQAKDNFEEALREIIEDIPNSHEIIVAGDLNARVG 125          
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001455D155 (uncharacterized protein LOC117297930 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D155)

HSP 1 Score: 57.4 bits (137), Expect = 1.490e-6
Identity = 45/161 (27.95%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   25 ITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGM 507
            + +AT NV T+    K G    +     + R+   + GL E    G        Y++Y SG  GR  G       V L +   ++++      +S+R+L     L  R   IT +V Y  TE  +A++K  F+  L+  ++  P H+QL V+ D NA +G+
Sbjct:  100 LRVATWNVLTLC---KAGYPEAMSHELTHYRIS--IAGLTEALIPGTGERRIDQYTMYHSGSTGRTEG-------VALLLNNKVSQSLTEWTPVSNRILHA--RLHHRHSHITIIVVYALTELASAADKDVFYNQLEPLIQSTPPHDQLLVIGDLNAVSGI 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JBD7_9PHAE3.970e-3143.20Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JPX0_9PHAE1.260e-2535.67Reverse transcriptase domain-containing protein n=... [more]
A0A3S3P648_9ACAR8.340e-1029.63Endonuclease-reverse transcriptase-like protein n=... [more]
W2SH60_NECAM6.260e-828.17Uncharacterized protein n=1 Tax=Necator americanus... [more]
A0A6J2YH64_SITOR8.150e-827.78craniofacial development protein 2-like n=2 Tax=Si... [more]
UPI0018D1B9281.360e-728.28craniofacial development protein 2-like n=1 Tax=Pl... [more]
UPI001D087C7A2.110e-730.95craniofacial development protein 2-like n=1 Tax=Co... [more]
A0A8D8X691_9HEMI2.340e-728.39Craniofacial development protein 2 (Fragment) n=2 ... [more]
UPI001D06624E1.030e-630.95craniofacial development protein 2-like n=1 Tax=Co... [more]
UPI001455D1551.490e-627.95uncharacterized protein LOC117297930 n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135928contigH-elongata_contig135928:1257..1769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog7668.SPU_010878-tr
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.6361115-CDS-H-elongata_contig135928:1256..17691622929806.6361115-CDS-H-elongata_contig135928:1256..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135928 1257..1769 +
1691679164.7667024-CDS-H-elongata_contig135928:1256..17691691679164.7667024-CDS-H-elongata_contig135928:1256..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135928 1257..1769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135928.2533.1prot_H-elongata_contig135928.2533.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135928 1257..1769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135928.2533.1

>prot_H-elongata_contig135928.2533.1 ID=prot_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
RARARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQET
RRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPE
FISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEE
VPRHEQLFVLMDANARTGMRE
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mRNA from alignment at H-elongata_contig135928:1257..1769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135928.2533.1 ID=mRNA_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig135928:1257..1769+ (Himanthalia elongata Himel1 dioecious)
CGAGCACGTGCACGTGGACGGGAGATCACAATTGCCACGCACAACGTCCG GACGATGGCGGTGGATGGGAAGCACGGAGTTGGACGGGTGCTAGATGTTT TGGATGTATACGACCGACTAGGGTATGACGTTATCGGTCTGCAGGAGACC CGCCGCAGTGGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTG CAGTGGTGAGTACGGTAGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAG TAGGGCTAGCTATTAGAACTTCCATCACACGTGCTGCACGGCCACCGGAG TTTATCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGC CAAGGCCATTACGTTTCTTGTGGCGTATACCCCCACTGAAACACAGAATG CTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAG GTACCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCAC GGGGATGAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig135928:1257..1769+

>mRNA_H-elongata_contig135928.2533.1 ID=mRNA_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig135928:1257..1769+ (Himanthalia elongata Himel1 dioecious)
CGAGCACGTGCACGTGGACGGGAGATCACAATTGCCACGCACAACGTCCG
GACGATGGCGGTGGATGGGAAGCACGGAGTTGGACGGGTGCTAGATGTTT
TGGATGTATACGACCGACTAGGGTATGACGTTATCGGTCTGCAGGAGACC
CGCCGCAGTGGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTG
CAGTGGTGAGTACGGTAGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAG
TAGGGCTAGCTATTAGAACTTCCATCACACGTGCTGCACGGCCACCGGAG
TTTATCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGC
CAAGGCCATTACGTTTCTTGTGGCGTATACCCCCACTGAAACACAGAATG
CTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAG
GTACCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCAC
GGGGATGAGGGAGCGAGCACGTGCACGTGGACGGGAGATCACAATTGCCA
CGCACAACGTCCGGACGATGGCGGTGGATGGGAAGCACGGAGTTGGACGG
GTGCTAGATGTTTTGGATGTATACGACCGACTAGGGTATGACGTTATCGG
TCTGCAGGAGACCCGCCGCAGTGGACATTCAGCCTTCAATCAGGCTGGCT
ACTCGGTGTACTGCAGTGGTGAGTACGGTAGGGAAAATGGTGGGAAGAAA
GGGCAAGGTGGAGTAGGGCTAGCTATTAGAACTTCCATCACACGTGCTGC
ACGGCCACCGGAGTTTATCAGTGATCGCTTGCTAAAGGTTACACTTGAAC
TACGGGGTCGAGCCAAGGCCATTACGTTTCTTGTGGCGTATACCCCCACT
GAAACACAGAATGCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAG
AGCTGTGGAGGAGGTACCTAGACACGAACAGCTGTTCGTGTTGATGGATG
CCAACGCCCGCACGGGGATGAGGGAG
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