mRNA_H-elongata_contig135928.2533.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 128 bits (321), Expect = 3.970e-31 Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = 1
Query: 7 RARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMR 510
R +G+ + +AT NVRT+AV G +G GR VL R V+G+QETRR+G + F AG+ V+C G E GG G VG+A++ S+ + + EFI +RL+ + L L G A+ F+ A PTE AS+K FW LD V +P E ++VL+DANARTG R
Sbjct: 52 RQQGQLLRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT---ETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDR 214
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6H5JPX0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.260e-25 Identity = 61/171 (35.67%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 1 RARARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMR 510
R + +GR + + T NVRT+A +GK+G GR ++L + V+ LQE RR G + F AG+ V C G K+ GVG+A++ S+ + + ++ +RL+ + E+ G A+ F+ AY PTE A +K W LD V + E +++LMD NARTG+R
Sbjct: 45 RRKRQGRLLGVTTWNVRTLAGNGKNGYGRAFNILHEAAKQDISVVKLQEIRRPGQTEFAAAGFRVSCCGT------DKRNIHGVGIAVKESLCKTSTFTTNYVDERLMAMRFEMTGHRGAVNFVAAYAPTEVAAADSKTELWGKLDSLVRRIRSKECVYILMDVNARTGVR 209
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A3S3P648_9ACAR (Endonuclease-reverse transcriptase-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P648_9ACAR) HSP 1 Score: 67.0 bits (162), Expect = 8.340e-10 Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 1
Query: 31 IATHNVRTMAVDGKHGVGRVLDVLD-VYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGMRE 513
IAT NVR M+ GK LD++ DRL ++G+ E + + F ++VY SG + + GV +TRA ISDR++ + +R + IT L Y PT + F++SL+ A+++VP+ + ++++ D NA+ G +E
Sbjct: 62 IATWNVRGMS-QGK------LDIIKREMDRLKIGLLGISELHWTDNGYFQSDDFTVYYSGHDNIK------RNGVAFIACKRVTRAIESYSTISDRIISI--RIRAKPLFITILQIYAPTSDASEDEIERFYSSLEEALQQVPKKDIIYIMGDFNAKVGCQE 208
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: W2SH60_NECAM (Uncharacterized protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2SH60_NECAM) HSP 1 Score: 58.5 bits (140), Expect = 6.260e-8 Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 1
Query: 25 ITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEE 450
+TI T+N RT+A + + D++ ++ YDVIGL ETRR C K+G GGVG+ + TS+ + E ++ R+ ++ + G A+T V Y PT + + AF+ L++ E
Sbjct: 1 MTICTYNARTLASEAA-----IEDLIMQAKKIKYDVIGLTETRRR------------TCD---------KRGVGGVGVLVNTSMAKNIDSFEELTTRIGRLRMRRCGPTPALTIFVTYAPTSSYDEEEVEAFYLDLEKFYRE 116
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A6J2YH64_SITOR (craniofacial development protein 2-like n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YH64_SITOR) HSP 1 Score: 59.3 bits (142), Expect = 8.150e-8 Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
D+ + ET++ G + Y++ SG + K+G GVGL I E+ISDR+L VTL + + I + Y P +++ + + +F+ L AV+ + +++ ++ D NAR G
Sbjct: 20 DICSISETKKKGKGKYEIDDYTLIYSGV----SRDKRGHSGVGLLIDRKYKDHIEKEEYISDRILLVTLNVN--KENIHLISVYAPDISKDRAERESFYEELQEAVDRIQAKDKIVIMGDLNARVG 139
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI0018D1B928 (craniofacial development protein 2-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1B928) HSP 1 Score: 60.5 bits (145), Expect = 1.360e-7 Identity = 41/145 (28.28%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 73 HGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQA-GYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
H G++ +VL R D++G+ E R +G GYS+ SG+ E+ K + GV L + S + + I++R+L T + RA+ ++ + Y PTE K F+ LD + E+ R + + ++ D NA+ G
Sbjct: 2 HRDGKLEEVLREARRFSLDILGISEARWNGFGEETVGDGYSLLYSGKPNEED---KHEYGVALLLNKSAKQCLLNWKPINERIL--TARFKTRARNVSIIQCYAPTEDTECEKKDQFYLQLDETLREIKRKDIVVLMGDLNAKVG 141
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001D087C7A (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D087C7A) HSP 1 Score: 58.5 bits (140), Expect = 2.110e-7 Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
D+I L ET++ G + Y + SG G++ ++ + GV + I+ R E +S+R +KVT++LRGR+ IT L Y + K F +L +E++P ++ V D NAR G
Sbjct: 2 DIIVLSETKKKGIGSEGLREYIHFFSG-VGKD---QRAKAGVSILIQNKYKNKIRSWEPLSERFIKVTIQLRGRS--ITILGVYALNDDATVQAKDNFEEALREIIEDIPNSHEIIVAGDLNARVG 121
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: A0A8D8X691_9HEMI (Craniofacial development protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8X691_9HEMI) HSP 1 Score: 59.7 bits (143), Expect = 2.340e-7 Identity = 44/155 (28.39%), Postives = 77/155 (49.68%), Query Frame = 1
Query: 43 NVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFN-QAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
N+RTM+ + G RV++ + +++GL ETR +G Q G ++ SG +E+ Q GVG+ + RA + IS+R++ T RA+ IT ++ Y PTE K F+ +LD + ++ + + ++ D NA+ G
Sbjct: 12 NIRTMS---EAGTLRVIE--EEMKNYNLEILGLNETRWNGFGEIRTQGGNTLIFSG---KEDENAPKQAGVGILMTEKSKRAMIDWKPISERMM--TARFNSRARKITMVICYAPTEDAEEEIKDMFYDTLDDTLRKIKKQDIRILMGDVNAKLG 156
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001D06624E (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D06624E) HSP 1 Score: 57.8 bits (138), Expect = 1.030e-6 Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 127 DVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 504
D+I L ET++ G + + Y + SG G++ ++ + GV + I R E +S+R +KVT++LRGR+ IT L Y + K F +L +E++P ++ V D NAR G
Sbjct: 6 DIIVLSETKKKGIGSESLREYIHFFSG-VGKD---QRAKAGVSILIHNKYKNKIRSWEPLSERFIKVTIQLRGRS--ITILGVYVLNDDAAVQAKDNFEEALREIIEDIPNSHEIIVAGDLNARVG 125
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Match: UPI001455D155 (uncharacterized protein LOC117297930 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D155) HSP 1 Score: 57.4 bits (137), Expect = 1.490e-6 Identity = 45/161 (27.95%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 25 ITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETRRSGHSAFNQAGYSVYCSGEYGRENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYTPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTGM 507
+ +AT NV T+ K G + + R+ + GL E G Y++Y SG GR G V L + ++++ +S+R+L L R IT +V Y TE +A++K F+ L+ ++ P H+QL V+ D NA +G+
Sbjct: 100 LRVATWNVLTLC---KAGYPEAMSHELTHYRIS--IAGLTEALIPGTGERRIDQYTMYHSGSTGRTEG-------VALLLNNKVSQSLTEWTPVSNRILHA--RLHHRHSHITIIVVYALTELASAADKDVFYNQLEPLIQSTPPHDQLLVIGDLNAVSGI 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135928.2533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135928.2533.1 >prot_H-elongata_contig135928.2533.1 ID=prot_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp RARARGREITIATHNVRTMAVDGKHGVGRVLDVLDVYDRLGYDVIGLQETback to top mRNA from alignment at H-elongata_contig135928:1257..1769+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135928.2533.1 ID=mRNA_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig135928:1257..1769+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135928:1257..1769+ >mRNA_H-elongata_contig135928.2533.1 ID=mRNA_H-elongata_contig135928.2533.1|Name=mRNA_H-elongata_contig135928.2533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig135928:1257..1769+ (Himanthalia elongata Himel1 dioecious)back to top |