mRNA_H-elongata_contig135597.2519.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135597.2519.1
Unique NamemRNA_H-elongata_contig135597.2519.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.770e-14
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLS--LFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDI++VVRAVARH H P   + K  +KI+ Y+     L + F+R  ++ +   ++ DAD+  + + RRSVSGA V +    +     TQ CV  STS+ +Y+AM
Sbjct:  472 RPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAM 576          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.310e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLS--LFADADYVDRCSGRRSVSGAAVMLGNTSI----TTQHCVILSTSDVDYVAM 303
            RPDI++ VRAVARH H     + K  RKI+ Y+     L   +++   + +   ++ DA++  + + RRSVSGA V++ +  +     TQ CVILST++ +YVAM
Sbjct:   26 RPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLVYVDANFASKATDRRSVSGARVLVADCLVGWISRTQRCVILSTTEAEYVAM 130          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: V7C4C6_PHAVU (Uncharacterized protein (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C4C6_PHAVU)

HSP 1 Score: 70.9 bits (172), Expect = 4.220e-12
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   10 PDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            PDIA  V  V++ +H+P  R+ + V KII Y+KA+   G++F++G NL + ++ DADY      RRS +G  + LG   +T     Q+ V  S+++ ++ AM
Sbjct:    1 PDIAYAVSVVSQFMHDPRERHLQAVDKIIQYLKASPGKGLLFKKGENLSMKVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAM 102          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A8J5YTX2_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YTX2_9ROSI)

HSP 1 Score: 69.3 bits (168), Expect = 7.680e-12
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDIA  V  V++ +HNP   + + V +I+ Y+K     GI+F++G NL L  + DADY      RRS SG    LG   +T     Q+ V  S+++ ++ AM
Sbjct:  111 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVTWRSKKQNIVARSSAEAEFRAM 213          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KX04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX04_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-11
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    4 ARPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSL--FADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            A+PDIA+VVRAVAR+  +P   +      I  Y + A   GI  +RG     SL  +ADAD   + + RRSVSG  V  G   ++    TQ CV LST++ +YVA+
Sbjct:  601 AKPDIANVVRAVARYCASPKLVHWNAAMDIKGYARRASHFGISLQRGTVEGFSLQGYADADVASKAADRRSVSGGIVTYGGGPVSWFSRTQKCVTLSTTEAEYVAL 706          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A8J5XRK7_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XRK7_9ROSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.030e-11
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDIA  V  V++ +HNP   + + V +I+ Y+K     GI+F++G NL L  + DADY      RRS SG    LG+  +T     Q+ V  S+++  + AM
Sbjct:  162 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGDNLVTWRSKKQNVVARSSAEAAFRAM 264          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A1U8LQV3_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8LQV3_GOSHI)

HSP 1 Score: 68.6 bits (166), Expect = 2.320e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDIA  V  V++ +HNP   + + V +I+ Y+K     GI+F++G NL L  + DADYV     RRS S     LG   +T     Q+ V  S ++ ++ AM
Sbjct:  220 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYVGSMVDRRSTSSYCTFLGGNLVTWRSKKQNVVARSNAEAEFKAM 322          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A1U8NMN2_GOSHI (Rhamnogalacturonan endolyase n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8NMN2_GOSHI)

HSP 1 Score: 68.6 bits (166), Expect = 2.670e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDIA  V  V++ +HNP   + + V +I+ Y+K     GI+F++G NL L  + DADYV     RRS S     LG   +T     Q+ V  S ++ ++ AM
Sbjct:  231 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYVGSMVDRRSTSSYCTFLGGNLVTWRSKKQNVVARSNAEAEFKAM 333          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6P4MWD8_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Gossypium TaxID=3633 RepID=A0A6P4MWD8_GOSAR)

HSP 1 Score: 68.2 bits (165), Expect = 3.360e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
            RPDIA  V  V++ +HNP   + + + +I+ Y+K     GI+F++G NL L  + DADY      RRS SG    LG   +T     Q+ V  S+++ ++ AM
Sbjct:  231 RPDIAYAVGVVSQFMHNPKESHLRAMYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVTWRSKKQNVVARSSAEAEFRAM 333          
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6P4PAA7_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAA7_GOSAR)

HSP 1 Score: 67.0 bits (162), Expect = 4.440e-11
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT 252
            RPDIA  V  V++ +HNP   + + V +I+ Y+K     GI+F++G NL L  + DADY      RRS SG    LG   +T
Sbjct:  179 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVT 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE2.770e-1440.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KA29_9PHAE3.310e-1338.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
V7C4C6_PHAVU4.220e-1236.27Uncharacterized protein (Fragment) n=1 Tax=Phaseol... [more]
A0A8J5YTX2_9ROSI7.680e-1236.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KX04_9PHAE1.040e-1141.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XRK7_9ROSI2.030e-1136.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8LQV3_GOSHI2.320e-1136.89uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8NMN2_GOSHI2.670e-1136.89Rhamnogalacturonan endolyase n=1 Tax=Gossypium hir... [more]
A0A6P4MWD8_GOSAR3.360e-1135.92uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P4PAA7_GOSAR4.440e-1140.24uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135597contigH-elongata_contig135597:245..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.1
Seed ortholog evalue6.9e-10
Seed eggNOG ortholog3885.XP_007153038.1
EggNOG free text desc.mitochondrial protein AtMg00810-like
EggNOG OGs3884A@33090,3GPQE@35493,4JUNV@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.5016294-CDS-H-elongata_contig135597:244..5531622929805.5016294-CDS-H-elongata_contig135597:244..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135597 245..553 -
1691679164.3506913-CDS-H-elongata_contig135597:244..5531691679164.3506913-CDS-H-elongata_contig135597:244..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135597 245..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135597.2519.1prot_H-elongata_contig135597.2519.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135597 245..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135597.2519.1

>prot_H-elongata_contig135597.2519.1 ID=prot_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MARPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGN
LKLSLFADADYVDRCSGRRSVSGAAVMLGNTSITTQHCVILSTSDVDYVA
MVH
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mRNA from alignment at H-elongata_contig135597:245..553-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135597.2519.1 ID=mRNA_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig135597:245..553- (Himanthalia elongata Himel1 dioecious)
ATGGCGCGACCGGATATAGCCAGTGTGGTGAGAGCAGTGGCCCGACATGT CCACAATCCAGCGGCGCGGTATTGCAAGGTGGTTCGTAAGATAATTGCCT ACGTCAAGGCAGCCAAGGATCTGGGGATTGTGTTCCGGCGGGGAGGGAAC TTGAAGCTATCGTTGTTTGCTGACGCGGATTACGTCGACAGGTGTAGCGG CAGACGGTCGGTTTCGGGTGCTGCAGTTATGCTCGGAAATACAAGTATCA CGACGCAGCATTGCGTGATACTATCTACGAGTGATGTGGACTATGTGGCA ATGGTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig135597:245..553-

>mRNA_H-elongata_contig135597.2519.1 ID=mRNA_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig135597:245..553- (Himanthalia elongata Himel1 dioecious)
ATGGCGCGACCGGATATAGCCAGTGTGGTGAGAGCAGTGGCCCGACATGT
CCACAATCCAGCGGCGCGGTATTGCAAGGTGGTTCGTAAGATAATTGCCT
ACGTCAAGGCAGCCAAGGATCTGGGGATTGTGTTCCGGCGGGGAGGGAAC
TTGAAGCTATCGTTGTTTGCTGACGCGGATTACGTCGACAGGTGTAGCGG
CAGACGGTCGGTTTCGGGTGCTGCAGTTATGCTCGGAAATACAAGTATCA
CGACGCAGCATTGCGTGATACTATCTACGAGTGATGTGGACTATGTGGCA
ATGGTCCATATGGCGCGACCGGATATAGCCAGTGTGGTGAGAGCAGTGGC
CCGACATGTCCACAATCCAGCGGCGCGGTATTGCAAGGTGGTTCGTAAGA
TAATTGCCTACGTCAAGGCAGCCAAGGATCTGGGGATTGTGTTCCGGCGG
GGAGGGAACTTGAAGCTATCGTTGTTTGCTGACGCGGATTACGTCGACAG
GTGTAGCGGCAGACGGTCGGTTTCGGGTGCTGCAGTTATGCTCGGAAATA
CAAGTATCACGACGCAGCATTGCGTGATACTATCTACGAGTGATGTGGAC
TATGTGGCAATGGTCCAT
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