mRNA_H-elongata_contig135597.2519.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 2.770e-14 Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLS--LFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDI++VVRAVARH H P + K +KI+ Y+ L + F+R ++ + ++ DAD+ + + RRSVSGA V + + TQ CV STS+ +Y+AM
Sbjct: 472 RPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAM 576
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.310e-13 Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLS--LFADADYVDRCSGRRSVSGAAVMLGNTSI----TTQHCVILSTSDVDYVAM 303
RPDI++ VRAVARH H + K RKI+ Y+ L +++ + + ++ DA++ + + RRSVSGA V++ + + TQ CVILST++ +YVAM
Sbjct: 26 RPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLVYVDANFASKATDRRSVSGARVLVADCLVGWISRTQRCVILSTTEAEYVAM 130
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: V7C4C6_PHAVU (Uncharacterized protein (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C4C6_PHAVU) HSP 1 Score: 70.9 bits (172), Expect = 4.220e-12 Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 10 PDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
PDIA V V++ +H+P R+ + V KII Y+KA+ G++F++G NL + ++ DADY RRS +G + LG +T Q+ V S+++ ++ AM
Sbjct: 1 PDIAYAVSVVSQFMHDPRERHLQAVDKIIQYLKASPGKGLLFKKGENLSMKVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAM 102
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A8J5YTX2_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YTX2_9ROSI) HSP 1 Score: 69.3 bits (168), Expect = 7.680e-12 Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDIA V V++ +HNP + + V +I+ Y+K GI+F++G NL L + DADY RRS SG LG +T Q+ V S+++ ++ AM
Sbjct: 111 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVTWRSKKQNIVARSSAEAEFRAM 213
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6H5KX04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX04_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.040e-11 Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 4 ARPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSL--FADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
A+PDIA+VVRAVAR+ +P + I Y + A GI +RG SL +ADAD + + RRSVSG V G ++ TQ CV LST++ +YVA+
Sbjct: 601 AKPDIANVVRAVARYCASPKLVHWNAAMDIKGYARRASHFGISLQRGTVEGFSLQGYADADVASKAADRRSVSGGIVTYGGGPVSWFSRTQKCVTLSTTEAEYVAL 706
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A8J5XRK7_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XRK7_9ROSI) HSP 1 Score: 68.2 bits (165), Expect = 2.030e-11 Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDIA V V++ +HNP + + V +I+ Y+K GI+F++G NL L + DADY RRS SG LG+ +T Q+ V S+++ + AM
Sbjct: 162 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGDNLVTWRSKKQNVVARSSAEAAFRAM 264
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A1U8LQV3_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8LQV3_GOSHI) HSP 1 Score: 68.6 bits (166), Expect = 2.320e-11 Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDIA V V++ +HNP + + V +I+ Y+K GI+F++G NL L + DADYV RRS S LG +T Q+ V S ++ ++ AM
Sbjct: 220 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYVGSMVDRRSTSSYCTFLGGNLVTWRSKKQNVVARSNAEAEFKAM 322
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A1U8NMN2_GOSHI (Rhamnogalacturonan endolyase n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8NMN2_GOSHI) HSP 1 Score: 68.6 bits (166), Expect = 2.670e-11 Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDIA V V++ +HNP + + V +I+ Y+K GI+F++G NL L + DADYV RRS S LG +T Q+ V S ++ ++ AM
Sbjct: 231 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYVGSMVDRRSTSSYCTFLGGNLVTWRSKKQNVVARSNAEAEFKAM 333
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6P4MWD8_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Gossypium TaxID=3633 RepID=A0A6P4MWD8_GOSAR) HSP 1 Score: 68.2 bits (165), Expect = 3.360e-11 Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT----TQHCVILSTSDVDYVAM 303
RPDIA V V++ +HNP + + + +I+ Y+K GI+F++G NL L + DADY RRS SG LG +T Q+ V S+++ ++ AM
Sbjct: 231 RPDIAYAVGVVSQFMHNPKESHLRAMYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVTWRSKKQNVVARSSAEAEFRAM 333
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Match: A0A6P4PAA7_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAA7_GOSAR) HSP 1 Score: 67.0 bits (162), Expect = 4.440e-11 Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 7 RPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNLKLSLFADADYVDRCSGRRSVSGAAVMLGNTSIT 252
RPDIA V V++ +HNP + + V +I+ Y+K GI+F++G NL L + DADY RRS SG LG +T
Sbjct: 179 RPDIAYAVGVVSQFMHNPKESHLRAVYQILQYLKGTPGKGILFKKGENLTLEAYTDADYAGSMVDRRSTSGYCTFLGGNLVT 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135597.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135597.2519.1 >prot_H-elongata_contig135597.2519.1 ID=prot_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp MARPDIASVVRAVARHVHNPAARYCKVVRKIIAYVKAAKDLGIVFRRGGNback to top mRNA from alignment at H-elongata_contig135597:245..553- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135597.2519.1 ID=mRNA_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig135597:245..553- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135597:245..553- >mRNA_H-elongata_contig135597.2519.1 ID=mRNA_H-elongata_contig135597.2519.1|Name=mRNA_H-elongata_contig135597.2519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig135597:245..553- (Himanthalia elongata Himel1 dioecious)back to top |