mRNA_H-elongata_contig13539.2503.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: D7G6U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.270e-90 Identity = 160/276 (57.97%), Postives = 193/276 (69.93%), Query Frame = 1
Query: 1 GNVTLSGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRL-RGSEDEAIKVDGIIVEDPDALSEKVQMVIEALYGTVSLGGERSELEFVVGSGLRDAKTVVLGKL 825
G++TL GTQDEIN AL V Y +PPDWNS Q TFE +SV VDEQDS +GGD YPG+PRT+I +AP+NDPP +RGP E TA+EG T + GIEV D DAQ+T G +EVTVS +E GS V G++LGL S ESKTF GS+ +IN ALAGL FRG EFSG V VDD GNTG GG+LS L+IPI VSS+NN P V RE G L G EDE + VDGI+VED DA +V++ IEA +G +SLGG S+LEF G G D + +V G +
Sbjct: 87 GSLTLPGTQDEINAALLNVWYSAPPDWNSLGQDTFEALSVLVDEQDSAQGGDPYPGVPRTLIVLIAPINDPPLLRGPSEFTAVEGRTTVLGGIEVSDVDAQDTTGSVLEVTVSAAEKGSNVELGAKLGLFIKNSSDESKTFQGSVTNINKALAGLTFRGAFEFSGATTFKVEVDDMGNTGGGGALSDSLSIPIHVSSVNNPPRVTREQGLLLEGVEDEVVPVDGIMVEDQDAGGGRVKLTIEARHGKISLGGNPSDLEFDRGKGSLDDEVIVFGTI 362
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: A0A6H5KBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE) HSP 1 Score: 293 bits (751), Expect = 3.920e-87 Identity = 154/276 (55.80%), Postives = 191/276 (69.20%), Query Frame = 1
Query: 1 GNVTLSGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRL-RGSEDEAIKVDGIIVEDPDALSEKVQMVIEALYGTVSLGGERSELEFVVGSGLRDAKTVVLGKL 825
G++TL GTQDEIN AL V Y +PPDWNS Q TFE +SV VDEQDS +GGD YPG+PRT++ V PVNDPP +RGP E TA+EG T + GI+V D DAQ+T G +EVTVS +E GS V G++LGL S ESKTF GS+ +IN ALAGL FRG EFSG V V+D GNTG G +LS L+IPI VSS+NN P V R+ G L G EDE + VDGI+VED DA +V++ +EA +G +SLGG S+L+F G G D + +V G +
Sbjct: 70 GSLTLPGTQDEINAALLNVWYSAPPDWNSLGQDTFETLSVLVDEQDSAQGGDPYPGVPRTLVVLVTPVNDPPLLRGPSEFTAVEGRTTVLGGIKVFDVDAQDTAGSVLEVTVSAAEKGSSVELGAKLGLFIKNSSDESKTFQGSVTNINNALAGLTFRGAFEFSGATTFKVEVNDMGNTGGGEALSDSLSIPIHVSSVNNPPRVTRDQGLLLEGIEDEVVPVDGIMVEDQDAGGGRVKLTVEARHGKISLGGNPSDLKFDRGKGSLDDEVIVFGTI 345
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: UPI001CA75A4E (Ig-like domain-containing protein n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA75A4E) HSP 1 Score: 97.8 bits (242), Expect = 3.520e-19 Identity = 65/225 (28.89%), Postives = 115/225 (51.11%), Query Frame = 1
Query: 91 DQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVS-ISEAGSIVRPGSRL------GLLFDQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEAIKVDGIIVEDPDALSEKVQMVIEALYGTVS 744
D +++V + + T G +T +V VND P++ P E I GI ++D DA G + VT++ + +G++ G L G+ ++ S T G+L ++N AL+ L ++G P +G + VTV+D+GNTG GG+LS+ T+ + ++++N+ P + + G+ED I + GI V D DA + +Q+ + L GT++
Sbjct: 1636 DANGIAVVTVRLRDSGGTENGGVDTSPFQTFTINVTAVNDAPTLTLPGTQFVDEDTVLGIPGISINDVDAGS---GNLRVTLTALGPSGALT--GGNLSFSTIPGVAITGNNSNSVTLTGNLTNLNAALSSLNYQGKPNINGEDRIVVTVNDQGNTGAGGALSTTQTLTVNINAVNDAPVLTLVNSTITGAEDTPILLSGISVTDVDAGTSNIQVTVSVLQGTLN 1855
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: UPI0012FB475D (PKD domain-containing protein n=1 Tax=Algoriphagus resistens TaxID=1750590 RepID=UPI0012FB475D) HSP 1 Score: 94.7 bits (234), Expect = 3.920e-18 Identity = 84/283 (29.68%), Postives = 132/283 (46.64%), Query Frame = 1
Query: 7 VTLSGTQDEINTALARVSYVSPPDWNSPDQGTFE---IISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINT--ALAGLIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEAIKVDG-----IIVEDPDALSEKVQMVIEALYGTVSLGGERSELEFVVGSGLRDAKTVVLGKL 825
+T +GT E+ AL V + + D P G I+SVFV++++ +P IF V +ND PS+ P ++ +E + + I D DA G++ VTV + + S G+ S S GS+ IN AL L F + V+L++ ++D GNTG GG+LS + + V+++N+ P V G + +D A+ I V D DA S ++Q+ + A G VSL G L F VGSG+ D + +G +
Sbjct: 890 LTGTGTAAEMQAALRTVIFRNFTD--DPGLGNTRNTRIVSVFVEDENGATSD----AVPNPGIF-VTSINDAPSVTLPASISIMEDESSPLTAISFTDADA-----GSLPVTVLFTVDSGTLSADSGAGVTVG-GSPTSLLLEGSIADINAYVALENLEFTTDENATSEVQLNIDINDNGNTGNGGALSDQADVTLTVTAVNDAP-VNTVPGTQQTDQDAALVFSSGNGNLISVSDVDAGSNEMQVTLTATNGLVSLSGTAG-LSFSVGSGVNDGTMMFVGTI 1157
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: UPI0019F05EEF (Tandem-95 repeat protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019F05EEF) HSP 1 Score: 91.7 bits (226), Expect = 4.460e-17 Identity = 73/214 (34.11%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 7 VTLSGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGI------PRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWG---IEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLF---DQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGVVE-LDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPT 609
+T++GT+DEINTAL +SY SP D+N E I + V D+ GG A GI TV +V+ N+ P + P +T E + I + DPD GG ++VT+ + E G++ GS L F D T G+ +N AL GL + G +F+G + L + +DD GNTG GG+ +I I V+ +N+ PT
Sbjct: 1409 LTITGTRDEINTALDGLSY-SPADFNGD-----ETIDLQVTVNDNANGGTAIGGIGDAREATETVTINVSSNNEAPVLTAPPSITLPEDNQVIFENGNAISIDDPD---DFGGELQVTLEV-EYGTLTL-GSTTNLTFVEGDGTDDAKITIRGTETDLNAALEGLSYEGDADFNGPDDALSLVIDDLGNTGSGGNNVVNQSIDITVTPVNDAPT 1611
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: A0A2E8D3C2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D3C2_9PLAN) HSP 1 Score: 85.5 bits (210), Expect = 5.790e-15 Identity = 66/199 (33.17%), Postives = 91/199 (45.73%), Query Frame = 1
Query: 193 VAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESK---TFHGSLLSINTALA-----------GLIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEA---IKVDGIIVEDPDALSEKVQMVIEALYGT 738
+ PVND PS+ P A E AI I V DPD E+ G VEV + ++ V GL+ Q S+ T + INT L GL + G P F G +L+VTVDD GNTG G+ + T+PI VS+ N+ PTV + ED +++ + +DPD L+ Q+ I T
Sbjct: 7514 ITPVNDAPSLTIPGAQFAAEDLQHAIPAITVADPDVDEST-GQVEVELRVTNGTLTVNTNIAGGLVASQLSNNGTVTVTIQATPAQINTTLTHTDGQNPPRPDGLFYLGNPNFHGQDQLEVTVDDLGNTGAPGAETESRTVPISVSAANDSPTVVNPIADITVQEDALNTLVELFPRVFDDPDVLTANDQLTITVFNNT 7711
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: A0A246F987_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas nitroreducens TaxID=46680 RepID=A0A246F987_9PSED) HSP 1 Score: 85.1 bits (209), Expect = 7.410e-15 Identity = 80/281 (28.47%), Postives = 124/281 (44.13%), Query Frame = 1
Query: 7 VTLSGTQDEINTALA--RVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAG--LIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEAIKVDG----IIVEDPDALSEKVQMVIEALYGTVSLGGERSELEFVVGSGLRDAKTVVLGKL 825
+TLSG+ IN +A V ++ P NS T ++ +D D G A TV + PVND P + P + E A+ GI D DA G V V S++ + S G+ + + G L IN ++G + F P +G V LDV++DD GNTG GGS + T+ + V+++N+ P G + + + G I + D D +++ + A G ++LG S + F+VG+G D V G L
Sbjct: 1413 LTLSGSIANINAFIAGGAVYFLGAP--NSTANVT---LTAGID--DGGHSGGAVQTGSGTVSIAITPVNDAPHVSAPPSIGITEDVPQALTGISFSDLDAGS---GVVSVQFSVAPGSGTLAATSFAGVTVLGSGTGTLSLSGMLSDINAFVSGGAVSFTAAPNATGNVVLDVSIDDGGNTGSGGSQTDHTTVTLTVTAVNDAPVNSVPGTQSVLQDGTLVFSSGNGNPISIADVDVGGGTIRVTLTASNGLLTLGS-LSGVSFLVGNGTGDGTMVFEGNL 1682
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: A0A859QCH6_9HYPH (Uncharacterized protein n=1 Tax=Ensifer mexicanus TaxID=375549 RepID=A0A859QCH6_9HYPH) HSP 1 Score: 84.7 bits (208), Expect = 9.530e-15 Identity = 76/272 (27.94%), Postives = 117/272 (43.01%), Query Frame = 1
Query: 4 NVTLSGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGV--VELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEAIKVDG----IIVEDPDALSEKVQMVIEALYGTVSLGGERSELEFVVGSGLRDA 801
++TL+G+ IN +A S + + T + + GG + TV V P+ND P I P + E T + GI D DA G+ VTVS++ + S G+L + T GS+ IN +A P + V L ++D GN+G GG+L++ T+ + +++N+ P G ++ + + G I V D DA VQ+ + A G +SL G L FVVGSG DA
Sbjct: 655 SLTLTGSIANINAFIA----ASNLHYTTAANATGNVTLTAAISDNGNTGGAPQSDVD-TVTLVVTPLNDVPVITAPGSIAVAEDAATTVTGISFADVDA-----GSASVTVSLTVPSGALAATSAGGVLVSGGGTGTLTLSGSITDINAFIAASKVNFVPVANATSDVVLTAAINDGGNSGTGGALTTTTTVTLVTTAINDAPVNHVPGQQVIDTNSTLVFSSGNSNAITVSDIDAGGGTVQVTLTASNGLISLAGTTG-LTFVVGSGAGDA 915
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: A0A5B9QMD9_9BACT (Cadherin domain-containing protein n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QMD9_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 2.580e-14 Identity = 68/206 (33.01%), Postives = 91/206 (44.17%), Query Frame = 1
Query: 7 VTLSGTQDEINTALARVSYV----SPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSISEAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAGLIFRGPPEFSGVVE--LDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQP 606
VTL+GTQDE+NT L S V S + N D T ++ S GG G TV D++ VND P P T E TAI G+ + D DA G + + +S V + D T GS+ IN L L + G + G L VT +D GNTG GG+L TI I++S++N+ P
Sbjct: 3732 VTLTGTQDELNTFLNTASNVQYLHSTANLNGNDADTIQLQVTDNGNTGSGGGGQIDLG---TVNVDISAVNDAPVNTVPGTQTVAEETPTAINGVSIGDVDAAA---GNLTTRLQVSNGVLNVTLFGAATISAGSDGSGDLTIQGSVSDINATLTTLTYTGDTDVVGTAADTLTVTTNDGGNTGSGGALQDVDTIQIDISTINDAP 3931
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Match: UPI00177F30B6 (DUF4347 domain-containing protein n=2 Tax=Pseudomonas sp. PDM16 TaxID=2769292 RepID=UPI00177F30B6) HSP 1 Score: 83.2 bits (204), Expect = 3.260e-14 Identity = 81/262 (30.92%), Postives = 121/262 (46.18%), Query Frame = 1
Query: 16 SGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGGDAYPGIPRTVIFDVAPVNDPPSIRGPEEVTALEGHDTAIWGIEVHDPDAQETRGGAVEVTVSIS-EAGSIVRPGSRLGLLFDQDSHESKTFHGSLLSINTALAG--LIFRGPPEFSGVVELDVTVDDRGNTGEGGSLSSFLTIPIEVSSLNNQPTVRREGGRLRGSEDEAIKVDGIIVEDPDALSEKVQMVIEALYGT--------VSLGGERSEL 768
+ T + AL V+Y + D +P I V D Q+ + T I V VND P I P + E AI GI D DA G+ VTV+++ +GS+ G+ G + + + T GS+ +IN+ +AG L F + V L V+++D GNTG GG+ S+ TI ++V+++N+ PT+ G + +ED + GI D DA S V + GT VS+GG SEL
Sbjct: 758 TATLAQWQAALRSVTYSNGSD--APSTANRTISFVANDGQNDSTAA--------TKIVSVTAVNDAPQITAPVSIGVTEDMPGAITGISFSDVDA-----GSANVTVTLTIGSGSLSAIGN--GSVTVGGTSSALTLTGSIANINSFIAGSNLSFTTAANATADVTLTVSINDGGNTGNGGAQSANETITLQVTAVNDAPTITAPGS-IAITEDIPGALTGISFSDVDAGSGTVTVTFSVPSGTLNATSGNGVSIGGTSSEL 1001 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13539.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13539.2503.1 >prot_H-elongata_contig13539.2503.1 ID=prot_H-elongata_contig13539.2503.1|Name=mRNA_H-elongata_contig13539.2503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp GNVTLSGTQDEINTALARVSYVSPPDWNSPDQGTFEIISVFVDEQDSTRGback to top mRNA from alignment at H-elongata_contig13539:1004..1828+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13539.2503.1 ID=mRNA_H-elongata_contig13539.2503.1|Name=mRNA_H-elongata_contig13539.2503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig13539:1004..1828+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13539:1004..1828+ >mRNA_H-elongata_contig13539.2503.1 ID=mRNA_H-elongata_contig13539.2503.1|Name=mRNA_H-elongata_contig13539.2503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig13539:1004..1828+ (Himanthalia elongata Himel1 dioecious)back to top |