mRNA_H-elongata_contig13534.2497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13534.2497.1
Unique NamemRNA_H-elongata_contig13534.2497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13534.2497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13534contigH-elongata_contig13534:771..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.637281-UTR-H-elongata_contig13534:770..8881622929803.637281-UTR-H-elongata_contig13534:770..888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13534 771..888 +
1691679163.6674917-UTR-H-elongata_contig13534:770..8881691679163.6674917-UTR-H-elongata_contig13534:770..888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13534 771..888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.6502748-CDS-H-elongata_contig13534:888..13441622929803.6502748-CDS-H-elongata_contig13534:888..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13534 889..1344 +
1691679163.6751587-CDS-H-elongata_contig13534:888..13441691679163.6751587-CDS-H-elongata_contig13534:888..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13534 889..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13534.2497.1prot_H-elongata_contig13534.2497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13534 889..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13534.2497.1

>prot_H-elongata_contig13534.2497.1 ID=prot_H-elongata_contig13534.2497.1|Name=mRNA_H-elongata_contig13534.2497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MVNVIIKKCAIDEGDEDPRCGISGSKQPQYCADHALEGMALCMKKKCGGD
ECSKKTDYRAEHSLEGMIKANEKVYAGDDCSTVSSYETAGRNKREYLAEH
DVKGLVKIVHEKCAGDGCSKVPSYGIVGSKMREYCAKHSFDGIVQMAKKT
CT
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mRNA from alignment at H-elongata_contig13534:771..1344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13534.2497.1 ID=mRNA_H-elongata_contig13534.2497.1|Name=mRNA_H-elongata_contig13534.2497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at H-elongata_contig13534:771..1344+ (Himanthalia elongata Himel1 dioecious)
AGATATTCGATACGCGTATAGAGAAACAAGGCTCGTCCGCTTATTGCCGA
AGGTTAGTGCCAGCGGAGTTATCAGTAGCGGTTAGACGAAGTATTGCGCT
GAGCAAGCCTGAAGGGCAATGGTCAACGTTATAATTAAAAAGTGTGCCAT
CGATGAAGGCGATGAGGACCCGAGGTGCGGAATTTCCGGCAGCAAACAGC
CGCAATACTGCGCCGACCATGCATTAGAGGGGATGGCCTTATGTATGAAA
AAAAAATGTGGCGGTGATGAATGCAGCAAAAAGACTGACTACCGCGCCGA
GCATTCTTTGGAAGGCATGATAAAAGCGAATGAAAAAGTGTATGCTGGTG
ATGACTGCAGTACGGTATCGAGCTACGAGACGGCCGGAAGAAATAAGCGG
GAATATTTGGCCGAGCATGACGTCAAGGGTTTGGTCAAGATTGTTCATGA
AAAGTGTGCTGGTGATGGATGCTCGAAGGTACCAAGCTACGGGATTGTCG
GCAGTAAGATGCGGGAATACTGTGCTAAGCATTCTTTTGATGGAATTGTT
CAAATGGCAAAAAAAACGTGTACG
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Coding sequence (CDS) from alignment at H-elongata_contig13534:771..1344+

>mRNA_H-elongata_contig13534.2497.1 ID=mRNA_H-elongata_contig13534.2497.1|Name=mRNA_H-elongata_contig13534.2497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig13534:771..1344+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAACGTTATAATTAAAAAGTGTGCCATCGATGAAGGCGATGAGGA
CCCGAGGTGCGGAATTTCCGGCAGCAAACAGCCGCAATACTGCGCCGACC
ATGCATTAGAGGGGATGGCCTTATGTATGAAAAAAAAATGTGGCGGTGAT
GAATGCAGCAAAAAGACTGACTACCGCGCCGAGCATTCTTTGGAAGGCAT
GATAAAAGCGAATGAAAAAGTGTATGCTGGTGATGACTGCAGTACGGTAT
CGAGCTACGAGACGGCCGGAAGAAATAAGCGGGAATATTTGGCCGAGCAT
GACGTCAAGGGTTTGGTCAAGATTGTTCATGAAAAGTGTGCTGGTGATGG
ATGCTCGAAGGTACCAAGCTACGGGATTGTCGGCAGTAAGATGCGGGAAT
ACTGTGCTAAGCATTCTTTTGATGGAATTGTTCAAATGGCAAAAAAAACG
TGTACGATGGTCAACGTTATAATTAAAAAGTGTGCCATCGATGAAGGCGA
TGAGGACCCGAGGTGCGGAATTTCCGGCAGCAAACAGCCGCAATACTGCG
CCGACCATGCATTAGAGGGGATGGCCTTATGTATGAAAAAAAAATGTGGC
GGTGATGAATGCAGCAAAAAGACTGACTACCGCGCCGAGCATTCTTTGGA
AGGCATGATAAAAGCGAATGAAAAAGTGTATGCTGGTGATGACTGCAGTA
CGGTATCGAGCTACGAGACGGCCGGAAGAAATAAGCGGGAATATTTGGCC
GAGCATGACGTCAAGGGTTTGGTCAAGATTGTTCATGAAAAGTGTGCTGG
TGATGGATGCTCGAAGGTACCAAGCTACGGGATTGTCGGCAGTAAGATGC
GGGAATACTGTGCTAAGCATTCTTTTGATGGAATTGTTCAAATGGCAAAA
AAAACGTGTACG
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