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Homology
BLAST of mRNA_H-elongata_contig13527.2490.1 vs. uniprot
Match: D8LTG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG7_ECTSI) HSP 1 Score: 173 bits (439), Expect = 6.030e-42 Identity = 102/142 (71.83%), Postives = 121/142 (85.21%), Query Frame = 3
Query: 3 VECLRERVENLSRELRLARRDSARLAKLLKKEEDIGGEQRKRADEAVQETRALREELDRLKQAYKSRSTAARSALSDAHERSVLMAERRRRQQAESLMQAYKGLYEDQLQTQYASSESYHSLTRGYSRLSNDNKSLRRIIAA 428
VE LRERVENL+REL LAR+D RLA LK+EE +G E R++AD+AV+E +ALR+ELDR+KQ ++ +A+R+ALSDAH RSV MAERRRRQQAESLMQAYKGLYEDQL TQ+AS+ESY SLTRGYSRLS DNK+LRR AA
Sbjct: 33 VEWLRERVENLNRELVLARKDCGRLATQLKQEEGLGREHRRKADDAVREAKALRQELDRIKQDRAAKGSASRTALSDAHLRSVRMAERRRRQQAESLMQAYKGLYEDQLHTQHASAESYRSLTRGYSRLSADNKALRRETAA 174
BLAST of mRNA_H-elongata_contig13527.2490.1 vs. uniprot
Match: A0A6H5JIM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM1_9PHAE) HSP 1 Score: 173 bits (439), Expect = 1.780e-41 Identity = 101/138 (73.19%), Postives = 121/138 (87.68%), Query Frame = 3
Query: 3 VECLRERVENLSRELRLARRDSARLAKLLKKEEDIGGEQRKRADEAVQETRALREELDRLKQAYKSRSTAARSALSDAHERSVLMAERRRRQQAESLMQAYKGLYEDQLQTQYASSESYHSLTRGYSRLSNDNKSLRR 416
VE LRERVENLSREL LAR+DS RLAK LK+EE +G E R++AD+AV+E +ALR+ELDR+KQ + +A+R+ALSDAH RSV MAERRRR+QAESLMQAYKGLYEDQLQTQ+AS+ESY SLTRGYSR+S DN++LRR
Sbjct: 138 VEWLRERVENLSRELVLARKDSGRLAKQLKQEEGLGREHRRKADDAVREAKALRQELDRIKQDRAAIGSASRTALSDAHLRSVRMAERRRRRQAESLMQAYKGLYEDQLQTQHASAESYRSLTRGYSRISADNEALRR 275
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2541 |
| Cds size | 1329 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929802.9144797-UTR-H-elongata_contig13527:532..539 | 1622929802.9144797-UTR-H-elongata_contig13527:532..539 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13527 533..539 + |
| 1691679163.2775822-UTR-H-elongata_contig13527:532..539 | 1691679163.2775822-UTR-H-elongata_contig13527:532..539 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13527 533..539 + |
| 1622929803.0230784-UTR-H-elongata_contig13527:3271..4476 | 1622929803.0230784-UTR-H-elongata_contig13527:3271..4476 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13527 3272..4476 + |
| 1691679163.3273876-UTR-H-elongata_contig13527:3271..4476 | 1691679163.3273876-UTR-H-elongata_contig13527:3271..4476 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13527 3272..4476 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929802.9336023-CDS-H-elongata_contig13527:539..624 | 1622929802.9336023-CDS-H-elongata_contig13527:539..624 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 540..624 + |
| 1691679163.2864556-CDS-H-elongata_contig13527:539..624 | 1691679163.2864556-CDS-H-elongata_contig13527:539..624 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 540..624 + |
| 1622929802.9524012-CDS-H-elongata_contig13527:1151..1256 | 1622929802.9524012-CDS-H-elongata_contig13527:1151..1256 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 1152..1256 + |
| 1691679163.295083-CDS-H-elongata_contig13527:1151..1256 | 1691679163.295083-CDS-H-elongata_contig13527:1151..1256 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 1152..1256 + |
| 1622929802.9698966-CDS-H-elongata_contig13527:1792..1884 | 1622929802.9698966-CDS-H-elongata_contig13527:1792..1884 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 1793..1884 + |
| 1691679163.3036237-CDS-H-elongata_contig13527:1792..1884 | 1691679163.3036237-CDS-H-elongata_contig13527:1792..1884 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 1793..1884 + |
| 1622929802.99034-CDS-H-elongata_contig13527:2193..2335 | 1622929802.99034-CDS-H-elongata_contig13527:2193..2335 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 2194..2335 + |
| 1691679163.3116758-CDS-H-elongata_contig13527:2193..2335 | 1691679163.3116758-CDS-H-elongata_contig13527:2193..2335 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 2194..2335 + |
| 1622929803.006784-CDS-H-elongata_contig13527:2366..3271 | 1622929803.006784-CDS-H-elongata_contig13527:2366..3271 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 2367..3271 + |
| 1691679163.3192775-CDS-H-elongata_contig13527:2366..3271 | 1691679163.3192775-CDS-H-elongata_contig13527:2366..3271 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13527 2367..3271 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13527.2490.1 >prot_H-elongata_contig13527.2490.1 ID=prot_H-elongata_contig13527.2490.1|Name=mRNA_H-elongata_contig13527.2490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=443bp
MPEGTCGKPEPGAQACPERFRPTRQAPEERGRHWWRAAQTGGRGGPRNKG AEGRAGPPQASLQVPQHSSQISVVRCARTQRAHGGKASPTTGRKSDAGIQ GSLRGSTTNSVCFLGELPFPDEGLQPPLQRQQIPQANNRRLPVCVEHGAE TVAENGGSPLTDETGTIPGNGPGASDISLAPARDGNGVENVVKESAVTVA AEAVATATEVAAVCVSDAEIFSYSETSTTRGGQQEYGRASKDEISPTGTT STPETHASSPLDFIEASAVAETVPTERQSITRNGGERPVIPPTVGNSVGK GKVYLDDARSDGTSCSSAAFAFPMTGVSPSASWQQAECGQGGEEKTIDPL FVDAKPKEVAAPNFELASRWQGRPVPYEINTPRSASFPEFVGAPKKSDSP RALGWRRCGTHAEDLWGWGDREGNVSAEKGFTRIEPLRPHSI* back to topmRNA from alignment at H-elongata_contig13527:533..4476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig13527.2490.1 ID=mRNA_H-elongata_contig13527.2490.1|Name=mRNA_H-elongata_contig13527.2490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3944bp|location=Sequence derived from alignment at H-elongata_contig13527:533..4476+ (Himanthalia elongata Himel1 dioecious) AGGTGGAATGCCTGAGGGAACGTGTGGAAAACCTGAGCCGGGAGCTCAGG
CTTGCCCGGAGAGATTCCGCCCGACTCGCCAAGCTCCTGAAGGTGAGGGC
GTCAATCTTCTGTGCCGAGATGCGTTTCTCCATATTTGGCTCTGAAGCTG
TTCACTGGAGTATTTACTGAAGTCGTGTGTTATGCTTGGTGGGTGGAAAT
CGAAACAAGGCTACTCGGTCGCCGAGCGTATTTGGTTTACCTTTAAAAAT
TGCTTGGACGCTTATTTAAGAGCCCTACTAACAGTGGATGTATGATGATT
TGAAGGGCGGCAGGGAAAGCATTCCTGGATCTCTCACTACCTTTCCTACA
TGATTTTGCGTGCATTGAGCCATGGCTGCGTAGCGGTTGCGTAGAGCCGC
CACACTTGTAGCTATTCCTTTGTGAGAGACATTTTCCATCATTTTACGCT
CTTTTTTTTTGTCTATGTGTTTGAGAATTGTCGGCCTCTTGTTTATTACG
GAAGGGTGCTTGGTTATCTGGAATAGTGGGTTGTTTTGCTTGTCAGTCGG
CCAAGCATTCACCTTAGTTACCAACGTGGCGTGGTCGTGACTCGATCGTG
TCTTGGGTTGACGATACAGAAAGAGGAAGACATTGGTGGCGAGCAGCGCA
AACGGGCGGACGAGGCGGTCCAAGAAACAAGGGCGCTGAGGGAAGAGCTG
GACCGCCTCAAGCAAGCCTACAAGGTTATAATGAAAGCTTGCTATGCCGC
GCGTAACATAGGAAGACTTCGGATCAAAATTTGGTCATCGATAACCGGTC
GCCATCGGCTATACACCAAGCAATACATTATTTTGAATAAACAGGACTAG
AGTTATTAATAATTTCGTCGCATTTCACAAACGTAGATAAATCTTCGGGG
GGAGAATAAAGCATATTCGCTGTCAGTGTGGTATTAGAGGTGATATTTAC
ATGAGCCGGGTGTTAGTTCAATATATATATTATATATATATATATATATG
TTTCTCTACTACAGTAGTACATGGCGATGACGGTACACCGAGAAACGCTG
CGTCTCGTGATGTGTTGGGTATTCGCTTTGACGTGCGAGTGGCGTGTGCC
ATCCGCTGAGACAGTCCATGAAAATATGAAACATAAACGTTTTTTAGGCT
ATGTCCAACCCCATCCACCACCCCGGCCCCTTCTATATATATGAACCTCT
GGTCATCCTCCGTTGCGTACTTACTACTTACCTGATGTGTCCATTGCTCC
ATTACGGTAGTCCCGCAGCACAGCAGCCAGATCAGCGTTGTCCGATGCGC
ACGAACGCAGCGTGCTCATGGCGGAAAGGCGTCGCCGACAACAGGCAGAA
AGGTGCCTTAAGGATATTTATTACGCGTACGTTGACGTGATGTTTCCCGC
TTTCCAGACGACTTGTTAATTCTTCTCGAATTCAATGAATTCAATGATTT
GAAGAGGGTCTTTTGATTGAATCATCAACTCTCCGGTCTTGATATTTTGG
GTTTGTTGACCTTGAAGGCTCCGCTCTAGGATTTTAGGGCTTGTTCTCTC
TCTATATATATATGAAATTGTACATAATGTAAATATATATCAATTTCTAA
TACGGTACATTATACTTCGTATGTGTTTGTATCCCATATCCCTTTGTCCA
TTTTGCGGCAGTCTGATGCAGGCATACAAGGGTCTCTACGAGGATCAACT
ACAAACTCAGTATGCTTCCTCGGAGAGCTACCATTCCCTGACGAGGGGCT
ACAGCCGCCTCTCCAACGACAACAAATCCCTCAGGCGAATAATCGCCGCC
TCCACTGCGGCTGCTTCCACCGACTCACCCTCGACCGTTTGTGTCGAACA
CGGCGCAGAAACCGTGGCGGAAAATGGTGGCTCGCCTCTTACCGATGAGA
CCGGAACAATTCCAGGAAACGGCCCTGGCGCGAGCGACATCTCCCTGGCA
CCGGCGAGAGATGGTAATGGCGTGGAGAACGTGGTAAAAGAATCTGCTGT
GACTGTCGCCGCTGAGGCGGTTGCGACGGCGACCGAAGTTGCGGCCGTTT
GTGTTTCGGACGCGGAAATATTCTCGTACAGCGAAACTTCAACGACCAGG
GGAGGCCAACAGGAGTACGGGCGAGCGAGCAAAGACGAAATAAGCCCAAC
CGGTACCACCTCTACCCCCGAAACGCACGCCAGCTCCCCGTTGGACTTCA
TCGAGGCCAGTGCTGTGGCGGAAACGGTGCCCACAGAGAGGCAATCCATC
ACCAGAAATGGAGGCGAACGGCCCGTCATTCCACCGACGGTCGGCAACTC
TGTCGGTAAGGGAAAAGTTTATCTCGACGATGCCAGAAGCGACGGCACGA
GCTGCAGTAGTGCAGCGTTTGCCTTCCCGATGACAGGCGTATCCCCTTCG
GCTTCATGGCAACAGGCTGAATGCGGTCAAGGTGGCGAGGAAAAAACCAT
CGATCCGCTCTTCGTTGACGCGAAGCCGAAAGAAGTCGCTGCTCCTAATT
TCGAACTCGCCTCGCGTTGGCAGGGACGCCCTGTCCCGTATGAAATAAAT
ACACCACGATCCGCGTCGTTCCCTGAGTTCGTGGGTGCTCCCAAAAAGAG
TGATTCACCGCGTGCGCTCGGCTGGCGTCGCTGTGGGACACACGCCGAGG
ACTTGTGGGGTTGGGGAGATCGGGAAGGTAATGTATCCGCCGAGAAAGGG
TTTACTCGTATCGAACCTTTGCGGCCGCACAGTATATAGTCTATAGTGTG
CTCTGTGAAGGCAGTCCGACGATGCCGAAGTGGATTAAGCAACGGAAACC
GGTTCCGTCGGGCAAAAAAGGAAAGGAAAAGCCGCATGCGCGCCTCATGA
GTTTTCGCACTAGGATAATTCGCCGCGTGTATCGTGTCGGCGGCGGACGT
TGTGACAGGGAGCCGTCACGTTGCACCTTTACATTGCTATTTTTAAGGCT
TAAACGTGGCATGACATGACTGTAGTAGATATGTTTTCTTTTTTGTCTCT
CTCACTAACACGCGTGACTTTACCACTATTCATAGAGCGGGAATATGGGG
ACTAGCCCTTTTTACCTCTTACCACCAAAACTTGGGGTGGCATTCCGATA
CTAAGGTATAGGTATTCACCAAAATTGTGAGGACAGGCAGCAAGATAGAG
CTCTGAACCGCTTGGGTCATTCTCCAGCTGCATCGTTTCGATTTCCTCCA
CGATAGAAAGGAATAGAGTACAACAGAATAGTAGGGTATGGTCAAGAAGG
GTAAGCACCTAATTTTGCGATAGAGCTGAATAATAACGTACTTAAGGTTC
GGAGTAGCCACAAGATGGGTTGAAAGGGAGAGACATGATCCTTAGTAGCA
GTCTCCTCTTGATATTCGATTATCCATTGTTGAAGAGGTGAACGAACAGG
GATGCGTTTTTGTTGTTTCGTATTCCCGGCCTAGTAGGTCACGTTATCCT
GGTTGCAAAATCGAAGAAATATAGGGCCTCCAACATTCAATACCATTGCA
AGGTCCTTGGTCCGTCATGATTTCTCATGATCCCATTTTTACGCGTACAC
TTTTATGTGCTGCGATATTTTTCGATGATGTTGAACTCTAGCGCTTTATA
TTTGCATTTTGCAGCTATTGTAGTTTGTTTTTCTTCCGCTTTTAGCACTT
TTGCTACCAATCACGCGTGGCATCTAGGCATGTCCTCGCCAACGGTGCGT
GCTCGTTTAGTGCTTGTTACCATCTTGGTATTTCTCTTATCAAGGTCATG
AGGAAAGCATGGAATATGATGTAGGTATCTACGTCATTCGCCTGCTGACC
AAAGCGCCGCCCGTGGTCGACCTTTGGGGTCTCAAAAAGTTAGTGATGAT
GGTCTTAACATACAGGAGTAATAATACGTTACTTTGAAGTTAAGAAATTG
AAGCATTGCACATGCGCGAAGCCCTCTCGTTTCGTTAAGCCACC back to topCoding sequence (CDS) from alignment at H-elongata_contig13527:533..4476+ >mRNA_H-elongata_contig13527.2490.1 ID=mRNA_H-elongata_contig13527.2490.1|Name=mRNA_H-elongata_contig13527.2490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2658bp|location=Sequence derived from alignment at H-elongata_contig13527:533..4476+ (Himanthalia elongata Himel1 dioecious) ATGCCTGAGGGAACGTGTGGAAAACCTGAGCCGGGAGCTCAGGCTTGCCC GGAGAGATTCCGCCCGACTCGCCAAGCTCCTGAAGATGCCTGAGGGAACG TGTGGAAAACCTGAGCCGGGAGCTCAGGCTTGCCCGGAGAGATTCCGCCC GACTCGCCAAGCTCCTGAAGAAAGAGGAAGACATTGGTGGCGAGCAGCGC AAACGGGCGGACGAGGCGGTCCAAGAAACAAGGGCGCTGAGGGAAGAGCT GGACCGCCTCAAGCAAGCCTACAAGAAAGAGGAAGACATTGGTGGCGAGC AGCGCAAACGGGCGGACGAGGCGGTCCAAGAAACAAGGGCGCTGAGGGAA GAGCTGGACCGCCTCAAGCAAGCCTACAAGTCCCGCAGCACAGCAGCCAG ATCAGCGTTGTCCGATGCGCACGAACGCAGCGTGCTCATGGCGGAAAGGC GTCGCCGACAACAGGCAGAAAGTCCCGCAGCACAGCAGCCAGATCAGCGT TGTCCGATGCGCACGAACGCAGCGTGCTCATGGCGGAAAGGCGTCGCCGA CAACAGGCAGAAAGTCTGATGCAGGCATACAAGGGTCTCTACGAGGATCA ACTACAAACTCAGTATGCTTCCTCGGAGAGCTACCATTCCCTGACGAGGG GCTACAGCCGCCTCTCCAACGACAACAAATCCCTCAGGCGAATAATCGCC GCCTCCTCTGATGCAGGCATACAAGGGTCTCTACGAGGATCAACTACAAA CTCAGTATGCTTCCTCGGAGAGCTACCATTCCCTGACGAGGGGCTACAGC CGCCTCTCCAACGACAACAAATCCCTCAGGCGAATAATCGCCGCCTCCCC GTTTGTGTCGAACACGGCGCAGAAACCGTGGCGGAAAATGGTGGCTCGCC TCTTACCGATGAGACCGGAACAATTCCAGGAAACGGCCCTGGCGCGAGCG ACATCTCCCTGGCACCGGCGAGAGATGGTAATGGCGTGGAGAACGTGGTA AAAGAATCTGCTGTGACTGTCGCCGCTGAGGCGGTTGCGACGGCGACCGA AGTTGCGGCCGTTTGTGTTTCGGACGCGGAAATATTCTCGTACAGCGAAA CTTCAACGACCAGGGGAGGCCAACAGGAGTACGGGCGAGCGAGCAAAGAC GAAATAAGCCCAACCGGTACCACCTCTACCCCCGAAACGCACGCCAGCTC CCCGTTGGACTTCATCGAGGCCAGTGCTGTGGCGGAAACGGTGCCCACAG AGAGGCAATCCATCACCAGAAATGGAGGCGAACGGCCCGTCATTCCACCG ACGGTCGGCAACTCTGTCGGTAAGGGAAAAGTTTATCTCGACGATGCCAG AAGCGACGGCACGAGCTGCAGTAGTGCAGCGTTTGCCTTCCCGATGACAG GCGTATCCCCTTCGGCTTCATGGCAACAGGCTGAATGCGGTCAAGGTGGC GAGGAAAAAACCATCGATCCGCTCTTCGTTGACGCGAAGCCGAAAGAAGT CGCTGCTCCTAATTTCGAACTCGCCTCGCGTTGGCAGGGACGCCCTGTCC CGTATGAAATAAATACACCACGATCCGCGTCGTTCCCTGAGTTCGTGGGT GCTCCCAAAAAGAGTGATTCACCGCGTGCGCTCGGCTGGCGTCGCTGTGG GACACACGCCGAGGACTTGTGGGGTTGGGGAGATCGGGAAGGTAATGTAT CCGCCGAGAAAGGGTTTACTCGTATCGAACCTTTGCGGCCGCACAGTATA TAGCCGTTTGTGTCGAACACGGCGCAGAAACCGTGGCGGAAAATGGTGGC TCGCCTCTTACCGATGAGACCGGAACAATTCCAGGAAACGGCCCTGGCGC GAGCGACATCTCCCTGGCACCGGCGAGAGATGGTAATGGCGTGGAGAACG TGGTAAAAGAATCTGCTGTGACTGTCGCCGCTGAGGCGGTTGCGACGGCG ACCGAAGTTGCGGCCGTTTGTGTTTCGGACGCGGAAATATTCTCGTACAG CGAAACTTCAACGACCAGGGGAGGCCAACAGGAGTACGGGCGAGCGAGCA AAGACGAAATAAGCCCAACCGGTACCACCTCTACCCCCGAAACGCACGCC AGCTCCCCGTTGGACTTCATCGAGGCCAGTGCTGTGGCGGAAACGGTGCC CACAGAGAGGCAATCCATCACCAGAAATGGAGGCGAACGGCCCGTCATTC CACCGACGGTCGGCAACTCTGTCGGTAAGGGAAAAGTTTATCTCGACGAT GCCAGAAGCGACGGCACGAGCTGCAGTAGTGCAGCGTTTGCCTTCCCGAT GACAGGCGTATCCCCTTCGGCTTCATGGCAACAGGCTGAATGCGGTCAAG GTGGCGAGGAAAAAACCATCGATCCGCTCTTCGTTGACGCGAAGCCGAAA GAAGTCGCTGCTCCTAATTTCGAACTCGCCTCGCGTTGGCAGGGACGCCC TGTCCCGTATGAAATAAATACACCACGATCCGCGTCGTTCCCTGAGTTCG TGGGTGCTCCCAAAAAGAGTGATTCACCGCGTGCGCTCGGCTGGCGTCGC TGTGGGACACACGCCGAGGACTTGTGGGGTTGGGGAGATCGGGAAGGTAA TGTATCCGCCGAGAAAGGGTTTACTCGTATCGAACCTTTGCGGCCGCACA GTATATAG back to top
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