mRNA_H-elongata_contig135177.2484.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 181 bits (458), Expect = 4.450e-48 Identity = 96/263 (36.50%), Postives = 149/263 (56.65%), Query Frame = 1
Query: 4 PTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
P +++EA+AS EW +WK+A+ EM+ G + + P G+ +G + VF +K D+DG I +YK RL+AQG+ Q+ G+ Y E+ +P S+R LG+ A Q+DV AYL E+EE+IY+ P+ Y D +V L+K +YGL +G W ++F +L + GF + +AD C+++RI G + S T D + +L + F +KDLGE +G I RDR GT++ Q QYI+ + RFG+
Sbjct: 879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIF-SETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGM 1140
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 178 bits (451), Expect = 3.850e-47 Identity = 92/263 (34.98%), Postives = 149/263 (56.65%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFR-RILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
EP +++EAQAS EWP+W++A+ E + G W++ + PK + +G + VF+RK +K+G++ KYK RL+AQG+ Q+ G+ + E+ +P SIR +L + W Q+DV AYL +++E+IY+ P+ + D ++ L+K +YGL +G W +K EL G++R +ADPC++ G V ++ K EE RDL F + DLGE +G I RDR AG + Q YI+++ +R+
Sbjct: 906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELK-RDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRY 1167
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 177 bits (450), Expect = 5.210e-47 Identity = 92/261 (35.25%), Postives = 140/261 (53.64%), Query Frame = 1
Query: 4 PTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
P T+ +A+ S EW W+ A+ E + G W++ E + + ++GSR VF +K D+ G++ +YK RL+AQGF Q+ G+ Y ++ SP ++R + + A W RQ+D+ AYL E+EE+I++E P+ + D +V LK +YGL AG +W KK +L GF R+ ADPC++ G + + R + V L F +KDLGE LG I R+R T+T Q YI T+ ERF
Sbjct: 855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWVDDIILCGDSESRIDT-TVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERF 1114
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 177 bits (449), Expect = 7.150e-47 Identity = 99/266 (37.22%), Postives = 148/266 (55.64%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
+P +++EA S+EWP+WK AIA+EM + G + +VE PK ++GS+ VF+ K + +G IE YK RL+AQGF QV GI ++E+ +P ASIR++L + A W Q+DV AYL ++EE+IY+ P + K+ V LK+ +YGL +G + KK EL + G RS+ D C+F V + TK R++ + F + DLGE + LG + RDR+A TL+ Q YI + RF +
Sbjct: 921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNL 1186
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 173 bits (438), Expect = 2.490e-46 Identity = 96/266 (36.09%), Postives = 146/266 (54.89%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
+P +++EA S+EWP+WK AI +EM + G + +VE PK ++GS+ VF+ K + + IE YK RL+AQGF QV GI ++E+ +P ASI ++L + A W Q+DV AYL ++EE+IY++ P + K+ V LK+ +YGL +G + KK EL + G RS+ D C+F V + TK R++ + F + DLGE + LG + RDR+ TL+ QH YI + RF +
Sbjct: 111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNL 376
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 170 bits (430), Expect = 2.290e-44 Identity = 89/259 (34.36%), Postives = 145/259 (55.98%), Query Frame = 1
Query: 13 MSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFR-RILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
+++AQAS EW +W++A+ E + G W++ + PK + +G + VF+RK +K+ ++ KYK RL+AQG+ Q+ G+ + E+ +P SIR +L + W Q+DV AYL +++E+IY+ P+ + D ++ L+K +YGL +G W +K EL G++R +ADPC++ G V ++ K EE RDL F + DLGE +G I RDR AGTL Q YI+++ +R+
Sbjct: 715 LTKAQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELK-RDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKRY 972
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 168 bits (426), Expect = 8.550e-44 Identity = 97/270 (35.93%), Postives = 146/270 (54.07%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILH------GVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
+P + +A + + +W++A E+ GV++ V P+ + ++GS+ VFK K DG++EKYK RL+AQGF QV+GI Y+E+ +P SIR++L + A W Q+DV A+L E+EE+IY+++P ++ S V LKKA+YGL A W KK EL+ GF R QAD C+F + + V + TK D L S F + DLGE + L +TR+R T+ Q QYI+ + ER G+
Sbjct: 994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTKSD-------LGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGM 1256
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 165 bits (418), Expect = 1.000e-42 Identity = 95/266 (35.71%), Postives = 141/266 (53.01%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELP--QAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
EP ++ EA S +WPQW++AI +EM + +VE P+ V+GS+ VF+ K + +G+IE YK RL+AQGF Q+ GI ++++ +P ASIR++L + A W Q+DV AYL A++EE+I+++ P QA R V LL+ A+YGL +G W KK L+ G RS D C+F + T ++ F + DLGE + LG + RDR A TL+ Q YI + RF +
Sbjct: 959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNL 1224
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 161 bits (408), Expect = 1.690e-42 Identity = 99/268 (36.94%), Postives = 137/268 (51.12%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRD--SRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXX-SATKRDEEQAVRDLCSC-FPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
EP T+ EA+AS EWPQW+ AI E+ G W++ E P G V+GS VFK K D G I KYK RL+AQGF Q+ G+ Y ++ +P +SIR++ + A W Q+DV AYL ++EE+I+++ P + ++V L K +YGL AG W KK GF RS D +F R HG +A DE ++ F + DLGE + LG I RDR T++ Q YI T+ RF +
Sbjct: 29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFR--HGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNL 294
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 164 bits (415), Expect = 2.030e-42 Identity = 98/264 (37.12%), Postives = 141/264 (53.41%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAK-GFQRSQADPCLF-RRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
EP T+SEAQA+ EWP+WKRA+ E+ G + + P G+ +G R V++ K D DGRI +YK RL+AQGF Q G+ Y E+ +P S+R++L + A Q DV AYL A+++E+IY+ P Y + + L+KA+YGL AG W L A GFQR +DPC++ ++ G+ + D ++ L + I DLG LG I+RDR TL+ Q QYIQT+ +RF
Sbjct: 14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMHVDDMAALADTPDLMDTLRS--GLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRF 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135177.2484.1 >prot_H-elongata_contig135177.2484.1 ID=prot_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRback to top mRNA from alignment at H-elongata_contig135177:8..799- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135177.2484.1 ID=mRNA_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig135177:8..799- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135177:8..799- >mRNA_H-elongata_contig135177.2484.1 ID=mRNA_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig135177:8..799- (Himanthalia elongata Himel1 dioecious)back to top |