mRNA_H-elongata_contig135177.2484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135177.2484.1
Unique NamemRNA_H-elongata_contig135177.2484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 181 bits (458), Expect = 4.450e-48
Identity = 96/263 (36.50%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    4 PTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            P +++EA+AS EW +WK+A+  EM+     G +   + P G+  +G + VF +K D+DG I +YK RL+AQG+ Q+ G+ Y E+ +P     S+R  LG+ A       Q+DV  AYL  E+EE+IY+  P+ Y D   +V  L+K +YGL  +G  W ++F  +L + GF + +AD C+++RI  G +              S T  D  +   +L + F +KDLGE    +G  I RDR  GT++  Q QYI+ +  RFG+
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIF-SETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGM 1140          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 178 bits (451), Expect = 3.850e-47
Identity = 92/263 (34.98%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFR-RILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
            EP +++EAQAS EWP+W++A+  E +     G W++ + PK +  +G + VF+RK +K+G++ KYK RL+AQG+ Q+ G+ + E+ +P     SIR +L +     W   Q+DV  AYL  +++E+IY+  P+ + D   ++  L+K +YGL  +G  W +K   EL   G++R +ADPC++      G V              ++ K  EE   RDL   F + DLGE    +G  I RDR AG +   Q  YI+++ +R+
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELK-RDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRY 1167          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 177 bits (450), Expect = 5.210e-47
Identity = 92/261 (35.25%), Postives = 140/261 (53.64%), Query Frame = 1
Query:    4 PTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
            P T+ +A+ S EW  W+ A+  E    +  G W++ E  + + ++GSR VF +K D+ G++ +YK RL+AQGF Q+ G+ Y ++ SP     ++R  + + A   W  RQ+D+  AYL  E+EE+I++E P+ + D   +V  LK  +YGL  AG +W KK   +L   GF R+ ADPC++     G +               +  R +   V  L   F +KDLGE    LG  I R+R   T+T  Q  YI T+ ERF
Sbjct:  855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWVDDIILCGDSESRIDT-TVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERF 1114          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 177 bits (449), Expect = 7.150e-47
Identity = 99/266 (37.22%), Postives = 148/266 (55.64%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            +P +++EA  S+EWP+WK AIA+EM    + G + +VE PK   ++GS+ VF+ K + +G IE YK RL+AQGF QV GI ++E+ +P    ASIR++L + A   W   Q+DV  AYL  ++EE+IY+  P    +  K+  V  LK+ +YGL  +G  + KK   EL + G  RS+ D C+F       V              + TK       R++ + F + DLGE  + LG  + RDR+A TL+  Q  YI  +  RF +
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNL 1186          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 173 bits (438), Expect = 2.490e-46
Identity = 96/266 (36.09%), Postives = 146/266 (54.89%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            +P +++EA  S+EWP+WK AI +EM    + G + +VE PK   ++GS+ VF+ K + +  IE YK RL+AQGF QV GI ++E+ +P    ASI ++L + A   W   Q+DV  AYL  ++EE+IY++ P    +  K+  V  LK+ +YGL  +G  + KK   EL + G  RS+ D C+F       V              + TK       R++ + F + DLGE  + LG  + RDR+  TL+  QH YI  +  RF +
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNL 376          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 170 bits (430), Expect = 2.290e-44
Identity = 89/259 (34.36%), Postives = 145/259 (55.98%), Query Frame = 1
Query:   13 MSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFR-RILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
            +++AQAS EW +W++A+  E +     G W++ + PK +  +G + VF+RK +K+ ++ KYK RL+AQG+ Q+ G+ + E+ +P     SIR +L +     W   Q+DV  AYL  +++E+IY+  P+ + D   ++  L+K +YGL  +G  W +K   EL   G++R +ADPC++      G V              ++ K  EE   RDL   F + DLGE    +G  I RDR AGTL   Q  YI+++ +R+
Sbjct:  715 LTKAQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELK-RDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKRY 972          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 168 bits (426), Expect = 8.550e-44
Identity = 97/270 (35.93%), Postives = 146/270 (54.07%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILH------GVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            +P +  +A +  +  +W++A   E+      GV++ V  P+ + ++GS+ VFK K   DG++EKYK RL+AQGF QV+GI Y+E+ +P     SIR++L + A   W   Q+DV  A+L  E+EE+IY+++P  ++ S   V  LKKA+YGL  A   W KK   EL+  GF R QAD C+F + +        V               + TK D       L S F + DLGE  + L   +TR+R   T+   Q QYI+ + ER G+
Sbjct:  994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTKSD-------LGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGM 1256          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 165 bits (418), Expect = 1.000e-42
Identity = 95/266 (35.71%), Postives = 141/266 (53.01%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELP--QAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            EP ++ EA  S +WPQW++AI +EM        + +VE P+   V+GS+ VF+ K + +G+IE YK RL+AQGF Q+ GI ++++ +P    ASIR++L + A   W   Q+DV  AYL A++EE+I+++ P  QA R     V LL+ A+YGL  +G  W KK    L+  G  RS  D C+F                      + T         ++   F + DLGE  + LG  + RDR A TL+  Q  YI  +  RF +
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNL 1224          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 161 bits (408), Expect = 1.690e-42
Identity = 99/268 (36.94%), Postives = 137/268 (51.12%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRD--SRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCLFRRILHGVVXXXXXXXXXXXXXX-SATKRDEEQAVRDLCSC-FPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV 792
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E P G  V+GS  VFK K D  G I KYK RL+AQGF Q+ G+ Y ++ +P    +SIR++  + A   W   Q+DV  AYL  ++EE+I+++ P  +      ++V  L K +YGL  AG  W KK        GF RS  D  +F R  HG                 +A   DE   ++      F + DLGE  + LG  I RDR   T++  Q  YI T+  RF +
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFR--HGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNL 294          
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 164 bits (415), Expect = 2.030e-42
Identity = 98/264 (37.12%), Postives = 141/264 (53.41%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKRKIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAALGW*ARQLDVDMAYLEAEVEEDIYVELPQAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAK-GFQRSQADPCLF-RRILHGVVXXXXXXXXXXXXXXSATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERF 786
            EP T+SEAQA+ EWP+WKRA+  E+      G +   + P G+  +G R V++ K D DGRI +YK RL+AQGF Q  G+ Y E+ +P     S+R++L + A       Q DV  AYL A+++E+IY+  P  Y +    +  L+KA+YGL  AG  W       L A  GFQR  +DPC++ ++   G+               +    D  ++   L   + I DLG     LG  I+RDR   TL+  Q QYIQT+ +RF
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMHVDDMAALADTPDLMDTLRS--GLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRF 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135177.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284QR88_ARMOS4.450e-4836.50Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GYH9_9APHY3.850e-4734.98Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A0C3AKI0_9AGAM5.210e-4735.25Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A401GN13_9APHY7.150e-4737.22Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GP19_9APHY2.490e-4636.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H727_9APHY2.290e-4434.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A0C2WN23_AMAMK8.550e-4435.93Integrase catalytic domain-containing protein (Fra... [more]
A0A401GQU1_9APHY1.000e-4235.71Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A4Y9ZVS1_9AGAM1.690e-4236.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2V3W8_TRAPU2.030e-4237.12Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135177contigH-elongata_contig135177:8..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog65672.G4TQV9
EggNOG free text desc.Encoded by
EggNOG OGs227R3@155619,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135177.2484.1prot_H-elongata_contig135177.2484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135177 476..787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.4457567-UTR-H-elongata_contig135177:7..4751622929802.4457567-UTR-H-elongata_contig135177:7..475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135177 8..475 -
1691679163.1152408-UTR-H-elongata_contig135177:7..4751691679163.1152408-UTR-H-elongata_contig135177:7..475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135177 8..475 -
1622929802.4787254-UTR-H-elongata_contig135177:787..7991622929802.4787254-UTR-H-elongata_contig135177:787..799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135177 788..799 -
1691679163.1413832-UTR-H-elongata_contig135177:787..7991691679163.1413832-UTR-H-elongata_contig135177:787..799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135177 788..799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.4633818-CDS-H-elongata_contig135177:475..7871622929802.4633818-CDS-H-elongata_contig135177:475..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135177 476..787 -
1691679163.1308415-CDS-H-elongata_contig135177:475..7871691679163.1308415-CDS-H-elongata_contig135177:475..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135177 476..787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135177.2484.1

>prot_H-elongata_contig135177.2484.1 ID=prot_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSEAQASSEWPQWKRAIAREMNGQIARGVWQVVECPKGKTVLGSRVVFKR
KIDKDGRIEKYKCRLLAQGFRQVKGIHYDESSSPTPAQASIRMVLGMIAA
LGW*
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mRNA from alignment at H-elongata_contig135177:8..799-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135177.2484.1 ID=mRNA_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig135177:8..799- (Himanthalia elongata Himel1 dioecious)
GAGCCGACAACCATGAGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATG GAAAAGGGCGATCGCGCGCGAGATGAATGGGCAAATTGCTCGAGGCGTGT GGCAGGTGGTGGAGTGCCCAAAAGGGAAGACGGTGTTGGGCTCGAGAGTA GTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATG TCGTCTCTTGGCGCAGGGTTTCAGGCAAGTCAAAGGCATACACTACGATG AATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGAATGGTACTGGGT ATGATCGCGGCTCTCGGCTGGTAGGCGCGGCAGCTGGACGTTGACATGGC CTACCTGGAGGCCGAAGTGGAGGAAGATATCTACGTTGAGCTTCCGCAGG CATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAAAAGGCAATGTAC GGACTCGTCCATGCCGGGCTGCTGTGGTAAAAAAAGTTCGGGATCGAGCT CGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGTTTATTCCGGC GGATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTCGACGAC CTGCTGGTTGTTAGTGCGACGAAACGTGACGAGGAGCAAGCAGTGAGGGA CCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCGTATTACC TGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGACGTTCGAC CAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig135177:8..799-

>mRNA_H-elongata_contig135177.2484.1 ID=mRNA_H-elongata_contig135177.2484.1|Name=mRNA_H-elongata_contig135177.2484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig135177:8..799- (Himanthalia elongata Himel1 dioecious)
ATGAGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGAT
CGCGCGCGAGATGAATGGGCAAATTGCTCGAGGCGTGTGGCAGGTGGTGG
AGTGCCCAAAAGGGAAGACGGTGTTGGGCTCGAGAGTAGTTTTCAAGCGA
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCTTGGC
GCAGGGTTTCAGGCAAGTCAAAGGCATACACTACGATGAATCCTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGAATGGTACTGGGTATGATCGCGGCT
CTCGGCTGGTAGATGAGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATG
GAAAAGGGCGATCGCGCGCGAGATGAATGGGCAAATTGCTCGAGGCGTGT
GGCAGGTGGTGGAGTGCCCAAAAGGGAAGACGGTGTTGGGCTCGAGAGTA
GTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATG
TCGTCTCTTGGCGCAGGGTTTCAGGCAAGTCAAAGGCATACACTACGATG
AATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGAATGGTACTGGGT
ATGATCGCGGCTCTCGGCTGGTAG
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